RNA–Protein interactions for RNA: ENST00000636839.1

CLN3-250, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 2,018 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-250ENST00000636839 NXNQ6DKJ4 435 aa19.52■□□□□ 0.72
CLN3-250ENST00000636839 THOC6Q86W42 341 aaKnown RBP19.52■□□□□ 0.72
CLN3-250ENST00000636839 MYLK4Q86YV6 388 aaPredicted RBP19.52■□□□□ 0.72
CLN3-250ENST00000636839 SYTL1Q8IYJ3 562 aa19.52■□□□□ 0.72
CLN3-250ENST00000636839 OR5K2Q8NHB8 316 aa19.52■□□□□ 0.72
CLN3-250ENST00000636839 KLHDC7BQ96G42 594 aa19.52■□□□□ 0.72
CLN3-250ENST00000636839 FERD3LQ96RJ6 166 aa19.52■□□□□ 0.72
CLN3-250ENST00000636839 MEAF6Q9HAF1 191 aa19.52■□□□□ 0.72
CLN3-250ENST00000636839 GPR27Q9NS67 375 aa19.52■□□□□ 0.72
CLN3-250ENST00000636839 SH2B3Q9UQQ2 575 aa19.52■□□□□ 0.72
CLN3-250ENST00000636839 OTCP00480 354 aa19.52■□□□□ 0.72
CLN3-250ENST00000636839 AOC1P19801 751 aa19.52■□□□□ 0.72
CLN3-250ENST00000636839 LRRC70Q7Z2Q7 622 aa19.52■□□□□ 0.72
CLN3-250ENST00000636839 DDIASQ8IXT1 998 aa19.52■□□□□ 0.72
CLN3-250ENST00000636839 CADM4Q8NFZ8 388 aa19.52■□□□□ 0.72
CLN3-250ENST00000636839 C19orf60Q96EN9 201 aa19.52■□□□□ 0.72
CLN3-250ENST00000636839 ZMYND15Q9H091 742 aa19.52■□□□□ 0.72
CLN3-250ENST00000636839 DNAJC11Q9NVH1 559 aa19.52■□□□□ 0.72
CLN3-250ENST00000636839 NCOR1O75376 2440 aa19.52■□□□□ 0.72
CLN3-250ENST00000636839 WDFY4Q6ZS81 3184 aa19.51■□□□□ 0.71
CLN3-250ENST00000636839 ZDBF2Q9HCK1 2354 aa19.51■□□□□ 0.71
CLN3-250ENST00000636839 MEI4A8MW99 385 aa19.51■□□□□ 0.71
CLN3-250ENST00000636839 NCF2P19878 526 aaPredicted RBP19.51■□□□□ 0.71
CLN3-250ENST00000636839 ACTR1BP42025 376 aa19.51■□□□□ 0.71
CLN3-250ENST00000636839 MAPK9P45984 424 aa19.51■□□□□ 0.71
CLN3-250ENST00000636839 HK2P52789 917 aa19.51■□□□□ 0.71
CLN3-250ENST00000636839 PKNOX1P55347 436 aa19.51■□□□□ 0.71
CLN3-250ENST00000636839 ACTR1AP61163 376 aa19.51■□□□□ 0.71
CLN3-250ENST00000636839 YBX1P67809 324 aaKnown RBP19.51■□□□□ 0.71
CLN3-250ENST00000636839 UAP1L1Q3KQV9 507 aa19.51■□□□□ 0.71
CLN3-250ENST00000636839 GALNTL6Q49A17 601 aa19.51■□□□□ 0.71
CLN3-250ENST00000636839 PRAMEF14Q5SWL7 426 aa19.51■□□□□ 0.71
CLN3-250ENST00000636839 LRRC56Q8IYG6 542 aaPredicted RBP19.51■□□□□ 0.71
CLN3-250ENST00000636839 OR56A3Q8NH54 315 aa19.51■□□□□ 0.71
CLN3-250ENST00000636839 METTL6Q8TCB7 284 aa19.51■□□□□ 0.71
CLN3-250ENST00000636839 MAELQ96JY0 434 aaKnown RBP19.51■□□□□ 0.71
CLN3-250ENST00000636839 FAR2Q96K12 515 aa19.51■□□□□ 0.71
CLN3-250ENST00000636839 FARSBQ9NSD9 589 aaKnown RBP19.51■□□□□ 0.71
CLN3-250ENST00000636839 A0A1W2PR77 199 aa19.51■□□□□ 0.71
CLN3-250ENST00000636839 E7ENX8 843 aa19.51■□□□□ 0.71
CLN3-250ENST00000636839 GIPC1O14908 333 aa19.51■□□□□ 0.71
CLN3-250ENST00000636839 UROSP10746 265 aa19.51■□□□□ 0.71
CLN3-250ENST00000636839 TBPL1P62380 186 aa19.51■□□□□ 0.71
CLN3-250ENST00000636839 TAP2Q03519 686 aa19.51■□□□□ 0.71
CLN3-250ENST00000636839 DMTNQ08495 405 aa19.51■□□□□ 0.71
CLN3-250ENST00000636839 RPE65Q16518 533 aa19.51■□□□□ 0.71
CLN3-250ENST00000636839 CCDC121Q6ZUS5 278 aa19.51■□□□□ 0.71
CLN3-250ENST00000636839 TREML1Q86YW5 311 aa19.51■□□□□ 0.71
CLN3-250ENST00000636839 DCUN1D3Q8IWE4 304 aa19.51■□□□□ 0.71
CLN3-250ENST00000636839 JPH3Q8WXH2 748 aaPredicted RBP19.51■□□□□ 0.71
CLN3-250ENST00000636839 SPACA7Q96KW9 195 aa19.51■□□□□ 0.71
CLN3-250ENST00000636839 MENTQ9BUN1 341 aa19.51■□□□□ 0.71
CLN3-250ENST00000636839 STN1Q9H668 368 aaKnown RBP19.51■□□□□ 0.71
CLN3-250ENST00000636839 XKR8Q9H6D3 395 aa19.51■□□□□ 0.71
CLN3-250ENST00000636839 SAR1AQ9NR31 198 aa19.51■□□□□ 0.71
CLN3-250ENST00000636839 VPS13AQ96RL7 3174 aa19.5■□□□□ 0.71
CLN3-250ENST00000636839 KLHL33A6NCF5 533 aa19.5■□□□□ 0.71
CLN3-250ENST00000636839 TRPC5OSA6NMA1 111 aa19.5■□□□□ 0.71
CLN3-250ENST00000636839 DCXO43602 365 aa19.5■□□□□ 0.71
CLN3-250ENST00000636839 CBX6O95503 412 aa19.5■□□□□ 0.71
CLN3-250ENST00000636839 PNLIPRP1P54315 467 aa19.5■□□□□ 0.71
CLN3-250ENST00000636839 NAA20P61599 178 aa19.5■□□□□ 0.71
CLN3-250ENST00000636839 C1orf61Q13536 156 aa19.5■□□□□ 0.71
CLN3-250ENST00000636839 SPATS2Q86XZ4 545 aaKnown RBP19.5■□□□□ 0.71
CLN3-250ENST00000636839 MAML2Q8IZL2 1156 aaPredicted RBP19.5■□□□□ 0.71
CLN3-250ENST00000636839 OR2T11Q8NH01 316 aa19.5■□□□□ 0.71
CLN3-250ENST00000636839 C1orf216Q8TAB5 229 aa19.5■□□□□ 0.71
CLN3-250ENST00000636839 ATL1Q8WXF7 558 aa19.5■□□□□ 0.71
CLN3-250ENST00000636839 RAD51AP1Q96B01 352 aa19.5■□□□□ 0.71
CLN3-250ENST00000636839 NTMT1Q9BV86 223 aa19.5■□□□□ 0.71
CLN3-250ENST00000636839 TRIT1Q9H3H1 467 aaKnown RBP19.5■□□□□ 0.71
CLN3-250ENST00000636839 ACTR8Q9H981 624 aa19.5■□□□□ 0.71
CLN3-250ENST00000636839 TM9SF3Q9HD45 589 aa19.5■□□□□ 0.71
CLN3-250ENST00000636839 DGKBQ9Y6T7 804 aa19.5■□□□□ 0.71
CLN3-250ENST00000636839 E7EQ34 232 aa19.49■□□□□ 0.71
CLN3-250ENST00000636839 SERPINA6P08185 405 aa19.49■□□□□ 0.71
CLN3-250ENST00000636839 CD38P28907 300 aa19.49■□□□□ 0.71
CLN3-250ENST00000636839 INHBCP55103 352 aa19.49■□□□□ 0.71
CLN3-250ENST00000636839 CPSF6Q16630 551 aaKnown RBP eCLIP19.49■□□□□ 0.71
CLN3-250ENST00000636839 SGO1Q5FBB7 561 aa19.49■□□□□ 0.71
CLN3-250ENST00000636839 METTL2BQ6P1Q9 378 aaKnown RBP19.49■□□□□ 0.71
CLN3-250ENST00000636839 MAMSTRQ6ZN01 415 aa19.49■□□□□ 0.71
CLN3-250ENST00000636839 AFAP1L2Q8N4X5 818 aa19.49■□□□□ 0.71
CLN3-250ENST00000636839 MTFMTQ96DP5 389 aaKnown RBP19.49■□□□□ 0.71
CLN3-250ENST00000636839 AKTIPQ9H8T0 292 aa19.49■□□□□ 0.71
CLN3-250ENST00000636839 ARL8BQ9NVJ2 186 aa19.49■□□□□ 0.71
CLN3-250ENST00000636839 LRP4O75096 1905 aa19.49■□□□□ 0.71
CLN3-250ENST00000636839 DMDP11532 3685 aa19.49■□□□□ 0.71
CLN3-250ENST00000636839 PRR5-ARHGAP8B1AHC4 643 aa19.49■□□□□ 0.71
CLN3-250ENST00000636839 KCNJ13O60928 360 aa19.49■□□□□ 0.71
CLN3-250ENST00000636839 TNFP01375 233 aa19.49■□□□□ 0.71
CLN3-250ENST00000636839 T-ENOLP0DO92 83 aa19.49■□□□□ 0.71
CLN3-250ENST00000636839 TDGF1P13385 188 aa19.49■□□□□ 0.71
CLN3-250ENST00000636839 HGFP14210 728 aa19.49■□□□□ 0.71
CLN3-250ENST00000636839 CD22P20273 847 aa19.49■□□□□ 0.71
CLN3-250ENST00000636839 NUDT1P36639 197 aa19.49■□□□□ 0.71
CLN3-250ENST00000636839 PTK2BQ14289 1009 aa19.49■□□□□ 0.71
CLN3-250ENST00000636839 ABRAXAS2Q15018 415 aa19.49■□□□□ 0.71
CLN3-250ENST00000636839 TTC23LQ6PF05 361 aa19.49■□□□□ 0.71
CLN3-250ENST00000636839 ACAD11Q709F0 780 aa19.49■□□□□ 0.71
Retrieved 100 of 20,778 RNA–protein pairs in 92.7 ms