RNA–Protein interactions for RNA: ENST00000635861.1

CLN3-241, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,404 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-241ENST00000635861 RBMXL3Q8N7X1 1067 aaKnown RBP17.74■□□□□ 0.43
CLN3-241ENST00000635861 Q8NA96 180 aa17.74■□□□□ 0.43
CLN3-241ENST00000635861 PTERQ96BW5 349 aa17.74■□□□□ 0.43
CLN3-241ENST00000635861 RAB11FIP5Q9BXF6 653 aa17.74■□□□□ 0.43
CLN3-241ENST00000635861 SPRTNQ9H040 489 aaPredicted RBP17.74■□□□□ 0.43
CLN3-241ENST00000635861 CASS4Q9NQ75 786 aa17.74■□□□□ 0.43
CLN3-241ENST00000635861 ENAMQ9NRM1 1142 aa17.74■□□□□ 0.43
CLN3-241ENST00000635861 ANAPC5Q9UJX4 755 aa17.74■□□□□ 0.43
CLN3-241ENST00000635861 PTRH2Q9Y3E5 179 aaKnown RBP17.74■□□□□ 0.43
CLN3-241ENST00000635861 TCAF1Q9Y4C2 921 aa17.74■□□□□ 0.43
CLN3-241ENST00000635861 GOLGA6L6A8MZA4 724 aa17.73■□□□□ 0.43
CLN3-241ENST00000635861 OR1I1O60431 355 aa17.73■□□□□ 0.43
CLN3-241ENST00000635861 APOA4P06727 396 aa17.73■□□□□ 0.43
CLN3-241ENST00000635861 PIM1P11309 404 aaPredicted RBP17.73■□□□□ 0.43
CLN3-241ENST00000635861 TTPAP49638 278 aa17.73■□□□□ 0.43
CLN3-241ENST00000635861 MYBPC3Q14896 1274 aa17.73■□□□□ 0.43
CLN3-241ENST00000635861 DEFB110Q30KQ9 67 aa17.73■□□□□ 0.43
CLN3-241ENST00000635861 FAM69BQ5VUD6 431 aa17.73■□□□□ 0.43
CLN3-241ENST00000635861 IGFL3Q6UXB1 125 aa17.73■□□□□ 0.43
CLN3-241ENST00000635861 MICALCLQ6ZW33 695 aa17.73■□□□□ 0.43
CLN3-241ENST00000635861 OR6P1Q8NGX9 317 aa17.73■□□□□ 0.43
CLN3-241ENST00000635861 TM9SF4Q92544 642 aa17.73■□□□□ 0.43
CLN3-241ENST00000635861 FKBP10Q96AY3 582 aa17.73■□□□□ 0.43
CLN3-241ENST00000635861 PAK5Q9P286 719 aa17.73■□□□□ 0.43
CLN3-241ENST00000635861 ZNF148Q9UQR1 794 aa17.73■□□□□ 0.43
CLN3-241ENST00000635861 CAPN6Q9Y6Q1 641 aa17.73■□□□□ 0.43
CLN3-241ENST00000635861 CNTRLQ7Z7A1 2325 aa17.73■□□□□ 0.43
CLN3-241ENST00000635861 HEATR5BQ9P2D3 2071 aa17.73■□□□□ 0.43
CLN3-241ENST00000635861 DOPEY1Q5JWR5 2465 aa17.73■□□□□ 0.43
CLN3-241ENST00000635861 A6NL46 340 aa17.72■□□□□ 0.43
CLN3-241ENST00000635861 AP3B1O00203 1094 aa17.72■□□□□ 0.43
CLN3-241ENST00000635861 KPNA5O15131 536 aa17.72■□□□□ 0.43
CLN3-241ENST00000635861 ONECUT2O95948 504 aa17.72■□□□□ 0.43
CLN3-241ENST00000635861 CD9P21926 228 aa17.72■□□□□ 0.43
CLN3-241ENST00000635861 PEBP1P30086 187 aaKnown RBP17.72■□□□□ 0.43
CLN3-241ENST00000635861 CCR7P32248 378 aa17.72■□□□□ 0.43
CLN3-241ENST00000635861 GCGRP47871 477 aa17.72■□□□□ 0.43
CLN3-241ENST00000635861 HSPA14Q0VDF9 509 aa17.72■□□□□ 0.43
CLN3-241ENST00000635861 TMED2Q15363 201 aa17.72■□□□□ 0.43
CLN3-241ENST00000635861 NKAIN1Q4KMZ8 207 aa17.72■□□□□ 0.43
CLN3-241ENST00000635861 ZC3H12BQ5HYM0 836 aaKnown RBP17.72■□□□□ 0.43
CLN3-241ENST00000635861 C4orf22Q6V702 233 aa17.72■□□□□ 0.43
CLN3-241ENST00000635861 ZNF534Q76KX8 674 aa17.72■□□□□ 0.43
CLN3-241ENST00000635861 GALNT16Q8N428 558 aa17.72■□□□□ 0.43
CLN3-241ENST00000635861 TAB3Q8N5C8 712 aaPredicted RBP17.72■□□□□ 0.43
CLN3-241ENST00000635861 ZNF655Q8N720 491 aaPredicted RBP17.72■□□□□ 0.43
CLN3-241ENST00000635861 PPHLN1Q8NEY8 458 aaKnown RBP17.72■□□□□ 0.43
CLN3-241ENST00000635861 ATG4AQ8WYN0 398 aa17.72■□□□□ 0.43
CLN3-241ENST00000635861 PANX3Q96QZ0 392 aa17.72■□□□□ 0.43
CLN3-241ENST00000635861 MENTQ9BUN1 341 aa17.72■□□□□ 0.43
CLN3-241ENST00000635861 TSGA10Q9BZW7 698 aa17.72■□□□□ 0.43
CLN3-241ENST00000635861 IRAK4Q9NWZ3 460 aa17.72■□□□□ 0.43
CLN3-241ENST00000635861 EURLQ9NYK6 297 aa17.72■□□□□ 0.43
CLN3-241ENST00000635861 CDYLQ9Y232 598 aa17.72■□□□□ 0.43
CLN3-241ENST00000635861 MDC1Q14676 2089 aaKnown RBP17.72■□□□□ 0.43
CLN3-241ENST00000635861 CENPEQ02224 2701 aa17.72■□□□□ 0.43
CLN3-241ENST00000635861 PRMT5O14744 637 aaPredicted RBP17.72■□□□□ 0.43
CLN3-241ENST00000635861 HCRTR1O43613 425 aa17.72■□□□□ 0.43
CLN3-241ENST00000635861 SLCO2B1O94956 709 aa17.72■□□□□ 0.43
CLN3-241ENST00000635861 IFNB1P01574 187 aa17.72■□□□□ 0.43
CLN3-241ENST00000635861 ALBP02768 609 aa17.72■□□□□ 0.43
CLN3-241ENST00000635861 TCTE1Q5JU00 501 aa17.72■□□□□ 0.43
CLN3-241ENST00000635861 C1orf189Q5VU69 101 aa17.72■□□□□ 0.43
CLN3-241ENST00000635861 TTC23LQ6PF05 361 aa17.72■□□□□ 0.43
CLN3-241ENST00000635861 LRRC6Q86X45 466 aa17.72■□□□□ 0.43
CLN3-241ENST00000635861 SLC13A5Q86YT5 568 aaPredicted RBP17.72■□□□□ 0.43
CLN3-241ENST00000635861 IQCKQ8N0W5 287 aa17.72■□□□□ 0.43
CLN3-241ENST00000635861 MPP5Q8N3R9 675 aa17.72■□□□□ 0.43
CLN3-241ENST00000635861 CCDC89Q8N998 374 aa17.72■□□□□ 0.43
CLN3-241ENST00000635861 OR2L8Q8NGY9 312 aa17.72■□□□□ 0.43
CLN3-241ENST00000635861 SSC4DQ8WTU2 575 aa17.72■□□□□ 0.43
CLN3-241ENST00000635861 WDR54Q9H977 334 aa17.72■□□□□ 0.43
CLN3-241ENST00000635861 EIF2B3Q9NR50 452 aaKnown RBP17.72■□□□□ 0.43
CLN3-241ENST00000635861 RAB6BQ9NRW1 208 aa17.72■□□□□ 0.43
CLN3-241ENST00000635861 CATSPERZQ9NTU4 200 aa17.72■□□□□ 0.43
CLN3-241ENST00000635861 P4HTMQ9NXG6 502 aa17.72■□□□□ 0.43
CLN3-241ENST00000635861 DHCR7Q9UBM7 475 aaKnown RBP17.72■□□□□ 0.43
CLN3-241ENST00000635861 SLC2A6Q9UGQ3 507 aa17.72■□□□□ 0.43
CLN3-241ENST00000635861 PLAGL1Q9UM63 463 aa17.72■□□□□ 0.43
CLN3-241ENST00000635861 A0A1B0GX78 115 aa17.71■□□□□ 0.43
CLN3-241ENST00000635861 RASGRF2O14827 1237 aa17.71■□□□□ 0.43
CLN3-241ENST00000635861 DDAH2O95865 285 aa17.71■□□□□ 0.43
CLN3-241ENST00000635861 MAGP20916 626 aa17.71■□□□□ 0.43
CLN3-241ENST00000635861 AOAHP28039 575 aa17.71■□□□□ 0.43
CLN3-241ENST00000635861 PCID2Q5JVF3 399 aa17.71■□□□□ 0.43
CLN3-241ENST00000635861 NAPRTQ6XQN6 538 aa17.71■□□□□ 0.43
CLN3-241ENST00000635861 RAB42Q8N4Z0 105 aa17.71■□□□□ 0.43
CLN3-241ENST00000635861 LINC01555Q8NAE3 123 aa17.71■□□□□ 0.43
CLN3-241ENST00000635861 ZNF778Q96MU6 729 aa17.71■□□□□ 0.43
CLN3-241ENST00000635861 DESI2Q9BSY9 194 aa17.71■□□□□ 0.43
CLN3-241ENST00000635861 SLC26A1Q9H2B4 701 aa17.71■□□□□ 0.43
CLN3-241ENST00000635861 IL1RAPL1Q9NZN1 696 aa17.71■□□□□ 0.43
CLN3-241ENST00000635861 B3GNT3Q9Y2A9 372 aa17.71■□□□□ 0.43
CLN3-241ENST00000635861 TARM1B6A8C7 271 aa17.7■□□□□ 0.42
CLN3-241ENST00000635861 AGPSO00116 658 aa17.7■□□□□ 0.42
CLN3-241ENST00000635861 KRT86O43790 486 aa17.7■□□□□ 0.42
CLN3-241ENST00000635861 APRTP07741 180 aa17.7■□□□□ 0.42
CLN3-241ENST00000635861 GRIA1P42261 906 aa17.7■□□□□ 0.42
CLN3-241ENST00000635861 GRB7Q14451 532 aa17.7■□□□□ 0.42
CLN3-241ENST00000635861 CYP2A13Q16696 494 aa17.7■□□□□ 0.42
Retrieved 100 of 20,778 RNA–protein pairs in 21.2 ms