RNA–Protein interactions for RNA: ENST00000628023.3

CLN3-239, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,183 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-239ENST00000628023 CACHD1Q5VU97 1274 aa17.52■□□□□ 0.4
CLN3-239ENST00000628023 UBE2R2Q712K3 238 aaPredicted RBP17.52■□□□□ 0.4
CLN3-239ENST00000628023 FBXO39Q8N4B4 442 aa17.52■□□□□ 0.4
CLN3-239ENST00000628023 AGBL5Q8NDL9 886 aa17.52■□□□□ 0.4
CLN3-239ENST00000628023 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP17.52■□□□□ 0.45e-8■■■■■ 65.3
CLN3-239ENST00000628023 MCMBPQ9BTE3 642 aa17.52■□□□□ 0.4
CLN3-239ENST00000628023 FUT8Q9BYC5 575 aa17.52■□□□□ 0.4
CLN3-239ENST00000628023 CAB39LQ9H9S4 337 aa17.52■□□□□ 0.4
CLN3-239ENST00000628023 SYTL2Q9HCH5 934 aa17.52■□□□□ 0.4
CLN3-239ENST00000628023 OR6C2Q9NZP2 312 aa17.52■□□□□ 0.4
CLN3-239ENST00000628023 GCN1Q92616 2671 aaKnown RBP17.51■□□□□ 0.39
CLN3-239ENST00000628023 EXOC1LA0A1B0GW35 172 aa17.51■□□□□ 0.39
CLN3-239ENST00000628023 PIPSLA2A3N6 862 aa17.51■□□□□ 0.39
CLN3-239ENST00000628023 TLCD2A6NGC4 264 aa17.51■□□□□ 0.39
CLN3-239ENST00000628023 POC1B-GALNT4F8VUJ3 575 aa17.51■□□□□ 0.39
CLN3-239ENST00000628023 BTN3A3O00478 584 aa17.51■□□□□ 0.39
CLN3-239ENST00000628023 RASGRF2O14827 1237 aa17.51■□□□□ 0.39
CLN3-239ENST00000628023 RIPK2O43353 540 aa17.51■□□□□ 0.39
CLN3-239ENST00000628023 ZBTB14O43829 449 aa17.51■□□□□ 0.39
CLN3-239ENST00000628023 PRB1P04280 392 aa17.51■□□□□ 0.39
CLN3-239ENST00000628023 C8GP07360 202 aa17.51■□□□□ 0.39
CLN3-239ENST00000628023 ITGA2BP08514 1039 aa17.51■□□□□ 0.39
CLN3-239ENST00000628023 ABHD2P08910 425 aa17.51■□□□□ 0.39
CLN3-239ENST00000628023 CHRM5P08912 532 aaPredicted RBP17.51■□□□□ 0.39
CLN3-239ENST00000628023 STMN1P16949 149 aa17.51■□□□□ 0.39
CLN3-239ENST00000628023 ZNF37AP17032 561 aaPredicted RBP17.51■□□□□ 0.39
CLN3-239ENST00000628023 CYP2A7P20853 494 aa17.51■□□□□ 0.39
CLN3-239ENST00000628023 ARL4DP49703 201 aa17.51■□□□□ 0.39
CLN3-239ENST00000628023 SEPHS1P49903 392 aa17.51■□□□□ 0.39
CLN3-239ENST00000628023 VSNL1P62760 191 aa17.51■□□□□ 0.39
CLN3-239ENST00000628023 C16orf72Q14CZ0 275 aa17.51■□□□□ 0.39
CLN3-239ENST00000628023 CCSMST1Q4G0I0 132 aa17.51■□□□□ 0.39
CLN3-239ENST00000628023 EEF1AKMT2Q5JPI9 291 aaKnown RBP17.51■□□□□ 0.39
CLN3-239ENST00000628023 TAOK1Q7L7X3 1001 aa17.51■□□□□ 0.39
CLN3-239ENST00000628023 PRSS42Q7Z5A4 293 aa17.51■□□□□ 0.39
CLN3-239ENST00000628023 TAX1BP1Q86VP1 789 aa17.51■□□□□ 0.39
CLN3-239ENST00000628023 FAM129CQ86XR2 697 aa17.51■□□□□ 0.39
CLN3-239ENST00000628023 NKAPQ8N5F7 415 aaKnown RBP17.51■□□□□ 0.39
CLN3-239ENST00000628023 UBLCP1Q8WVY7 318 aaPredicted RBP17.51■□□□□ 0.39
CLN3-239ENST00000628023 IL17FQ96PD4 163 aa17.51■□□□□ 0.39
CLN3-239ENST00000628023 CD180Q99467 661 aa17.51■□□□□ 0.39
CLN3-239ENST00000628023 PAFAH2Q99487 392 aa17.51■□□□□ 0.39
CLN3-239ENST00000628023 POPDC3Q9HBV1 291 aa17.51■□□□□ 0.39
CLN3-239ENST00000628023 CPNE5Q9HCH3 593 aa17.51■□□□□ 0.39
CLN3-239ENST00000628023 ACTR10Q9NZ32 417 aa17.51■□□□□ 0.39
CLN3-239ENST00000628023 SPATA7Q9P0W8 599 aa17.51■□□□□ 0.39
CLN3-239ENST00000628023 PDP2Q9P2J9 529 aa17.51■□□□□ 0.39
CLN3-239ENST00000628023 PISDQ9UG56 409 aa17.51■□□□□ 0.39
CLN3-239ENST00000628023 LNPEPQ9UIQ6 1025 aa17.51■□□□□ 0.39
CLN3-239ENST00000628023 POMT2Q9UKY4 750 aa17.51■□□□□ 0.39
CLN3-239ENST00000628023 KRT87PA6NCN2 255 aa17.5■□□□□ 0.39
CLN3-239ENST00000628023 EFCAB7A8K855 629 aa17.5■□□□□ 0.39
CLN3-239ENST00000628023 ISM1B1AKI9 464 aa17.5■□□□□ 0.39
CLN3-239ENST00000628023 TOX3O15405 576 aaPredicted RBP17.5■□□□□ 0.39
CLN3-239ENST00000628023 PHGDHO43175 533 aaKnown RBP17.5■□□□□ 0.39
CLN3-239ENST00000628023 KIF1CO43896 1103 aaKnown RBP17.5■□□□□ 0.39
CLN3-239ENST00000628023 TNFSF15O95150 251 aa17.5■□□□□ 0.39
CLN3-239ENST00000628023 TPBGLP0DKB5 382 aa17.5■□□□□ 0.39
CLN3-239ENST00000628023 HGFP14210 728 aa17.5■□□□□ 0.39
CLN3-239ENST00000628023 CDH3P22223 829 aa17.5■□□□□ 0.39
CLN3-239ENST00000628023 MSH2P43246 934 aa17.5■□□□□ 0.39
CLN3-239ENST00000628023 KPNA2P52292 529 aaKnown RBP17.5■□□□□ 0.39
CLN3-239ENST00000628023 VAC14Q08AM6 782 aa17.5■□□□□ 0.39
CLN3-239ENST00000628023 SP140Q13342 867 aa17.5■□□□□ 0.39
CLN3-239ENST00000628023 BMPR2Q13873 1038 aa17.5■□□□□ 0.39
CLN3-239ENST00000628023 ERCC6LQ2NKX8 1250 aa17.5■□□□□ 0.39
CLN3-239ENST00000628023 CYHR1Q6ZMK1 362 aa17.5■□□□□ 0.39
CLN3-239ENST00000628023 RAPH1Q70E73 1250 aa17.5■□□□□ 0.39
CLN3-239ENST00000628023 CEP97Q8IW35 865 aa17.5■□□□□ 0.39
CLN3-239ENST00000628023 ADGRF3Q8IZF5 1079 aa17.5■□□□□ 0.39
CLN3-239ENST00000628023 C2orf73Q8N5S3 287 aaPredicted RBP17.5■□□□□ 0.39
CLN3-239ENST00000628023 OR9A1PQ8NGU1 263 aa17.5■□□□□ 0.39
CLN3-239ENST00000628023 ASB11Q8WXH4 323 aa17.5■□□□□ 0.39
CLN3-239ENST00000628023 WBP1Q96G27 269 aa17.5■□□□□ 0.39
CLN3-239ENST00000628023 MAP3K3Q99759 626 aa17.5■□□□□ 0.39
CLN3-239ENST00000628023 SMG1Q96Q15 3661 aaKnown RBP17.5■□□□□ 0.39
CLN3-239ENST00000628023 CDRT15L2A8MXV6 281 aa17.49■□□□□ 0.39
CLN3-239ENST00000628023 ANKRD34CP0C6C1 535 aa17.49■□□□□ 0.39
CLN3-239ENST00000628023 MAPK10P53779 464 aa17.49■□□□□ 0.39
CLN3-239ENST00000628023 RAB10P61026 200 aa17.49■□□□□ 0.39
CLN3-239ENST00000628023 TSTA3Q13630 321 aaPredicted RBP17.49■□□□□ 0.39
CLN3-239ENST00000628023 GRB7Q14451 532 aa17.49■□□□□ 0.39
CLN3-239ENST00000628023 KIF26BQ2KJY2 2108 aa17.49■□□□□ 0.39
CLN3-239ENST00000628023 MROH9Q5TGP6 573 aa17.49■□□□□ 0.39
CLN3-239ENST00000628023 ANKS6Q68DC2 871 aa17.49■□□□□ 0.39
CLN3-239ENST00000628023 ARHGAP22Q7Z5H3 698 aa17.49■□□□□ 0.39
CLN3-239ENST00000628023 OR2L8Q8NGY9 312 aa17.49■□□□□ 0.39
CLN3-239ENST00000628023 MCOLN3Q8TDD5 553 aa17.49■□□□□ 0.39
CLN3-239ENST00000628023 SLC44A1Q8WWI5 657 aa17.49■□□□□ 0.39
CLN3-239ENST00000628023 TXLNGYQ9BZA5 131 aa17.49■□□□□ 0.39
CLN3-239ENST00000628023 SOHLH2Q9NX45 425 aa17.49■□□□□ 0.39
CLN3-239ENST00000628023 KALRNO60229 2985 aa17.48■□□□□ 0.39
CLN3-239ENST00000628023 A0A1W2PNU3 283 aaPredicted RBP17.48■□□□□ 0.39
CLN3-239ENST00000628023 PMS2P1A4D2B8 440 aa17.48■□□□□ 0.39
CLN3-239ENST00000628023 ZNF839A8K0R7 811 aa17.48■□□□□ 0.39
CLN3-239ENST00000628023 GFYI3L273 518 aa17.48■□□□□ 0.39
CLN3-239ENST00000628023 MYO1CO00159 1063 aa17.48■□□□□ 0.39
CLN3-239ENST00000628023 SLC16A5O15375 505 aa17.48■□□□□ 0.39
CLN3-239ENST00000628023 TSPAN12O95859 305 aa17.48■□□□□ 0.39
CLN3-239ENST00000628023 HIST1H2AGP0C0S8 130 aaPredicted RBP17.48■□□□□ 0.39
Retrieved 100 of 20,778 RNA–protein pairs in 30.2 ms