RNA–Protein interactions for RNA: ENST00000622516.4

CUX1-221, Transcript of cut like homeobox 1, humanhuman

TSL 1 (best) BASIC

Gene CUX1, Length 2,990 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-221ENST00000622516 FOXM1Q08050 763 aa10.35□□□□□ -0.75
CUX1-221ENST00000622516 FOXD4Q12950 439 aaPredicted RBP10.35□□□□□ -0.75
CUX1-221ENST00000622516 PPIGQ13427 754 aaKnown RBP eCLIP10.35□□□□□ -0.758e-7■■■□□ 18.1
CUX1-221ENST00000622516 ZNF805Q5CZA5 627 aa10.35□□□□□ -0.75
CUX1-221ENST00000622516 OTUD3Q5T2D3 398 aaPredicted RBP10.35□□□□□ -0.75
CUX1-221ENST00000622516 CACHD1Q5VU97 1274 aa10.35□□□□□ -0.75
CUX1-221ENST00000622516 TMEM214Q6NUQ4 689 aaKnown RBP10.35□□□□□ -0.75
CUX1-221ENST00000622516 TMEM220Q6QAJ8 160 aa10.35□□□□□ -0.75
CUX1-221ENST00000622516 GCNT7Q6ZNI0 430 aa10.35□□□□□ -0.75
CUX1-221ENST00000622516 TRIM46Q7Z4K8 759 aa10.35□□□□□ -0.75
CUX1-221ENST00000622516 C7orf61Q8IZ16 206 aa10.35□□□□□ -0.75
CUX1-221ENST00000622516 MCOLN3Q8TDD5 553 aa10.35□□□□□ -0.75
CUX1-221ENST00000622516 USP7Q93009 1102 aa10.35□□□□□ -0.75
CUX1-221ENST00000622516 ARMC5Q96C12 935 aa10.35□□□□□ -0.75
CUX1-221ENST00000622516 VPS50Q96JG6 964 aa10.35□□□□□ -0.75
CUX1-221ENST00000622516 UHRF1Q96T88 793 aaPredicted RBP10.35□□□□□ -0.75
CUX1-221ENST00000622516 ZBTB18Q99592 522 aa10.35□□□□□ -0.75
CUX1-221ENST00000622516 INPP5KQ9BT40 448 aa10.35□□□□□ -0.75
CUX1-221ENST00000622516 TMEM106CQ9BVX2 250 aa10.35□□□□□ -0.75
CUX1-221ENST00000622516 TRIM15Q9C019 465 aa10.35□□□□□ -0.75
CUX1-221ENST00000622516 CAAP1Q9H8G2 361 aa10.35□□□□□ -0.75
CUX1-221ENST00000622516 TRPS1Q9UHF7 1281 aa10.35□□□□□ -0.75
CUX1-221ENST00000622516 PRKAB1Q9Y478 270 aa10.35□□□□□ -0.75
CUX1-221ENST00000622516 CARNS1A5YM72 827 aa10.34□□□□□ -0.75
CUX1-221ENST00000622516 ARHGEF33A8MVX0 844 aa10.34□□□□□ -0.75
CUX1-221ENST00000622516 SLC28A1O00337 649 aa10.34□□□□□ -0.75
CUX1-221ENST00000622516 NUAK1O60285 661 aa10.34□□□□□ -0.75
CUX1-221ENST00000622516 KCNH1O95259 989 aa10.34□□□□□ -0.75
CUX1-221ENST00000622516 CLPTM1O96005 669 aa10.34□□□□□ -0.75
CUX1-221ENST00000622516 KRT6AP02538 564 aa10.34□□□□□ -0.75
CUX1-221ENST00000622516 KRT6BP04259 564 aa10.34□□□□□ -0.75
CUX1-221ENST00000622516 CA3P07451 260 aa10.34□□□□□ -0.75
CUX1-221ENST00000622516 CBSLP0DN79 551 aa10.34□□□□□ -0.75
CUX1-221ENST00000622516 IMPDH2P12268 514 aa10.34□□□□□ -0.75
CUX1-221ENST00000622516 CD22P20273 847 aa10.34□□□□□ -0.75
CUX1-221ENST00000622516 CBSP35520 551 aa10.34□□□□□ -0.75
CUX1-221ENST00000622516 KRT6CP48668 564 aa10.34□□□□□ -0.75
CUX1-221ENST00000622516 PTPN5P54829 565 aa10.34□□□□□ -0.75
CUX1-221ENST00000622516 PFN3P60673 137 aa10.34□□□□□ -0.75
CUX1-221ENST00000622516 TMEM115Q12893 351 aaPredicted RBP10.34□□□□□ -0.75
CUX1-221ENST00000622516 NAE1Q13564 534 aa10.34□□□□□ -0.75
CUX1-221ENST00000622516 SYTL3Q4VX76 610 aa10.34□□□□□ -0.75
CUX1-221ENST00000622516 USP39Q53GS9 565 aaKnown RBP10.34□□□□□ -0.75
CUX1-221ENST00000622516 HENMT1Q5T8I9 393 aaKnown RBP10.34□□□□□ -0.75
CUX1-221ENST00000622516 ANKRD26P1Q6NSI1 321 aa10.34□□□□□ -0.75
CUX1-221ENST00000622516 LIPIQ6XZB0 460 aa10.34□□□□□ -0.75
CUX1-221ENST00000622516 MSRB3Q8IXL7 192 aa10.34□□□□□ -0.75
CUX1-221ENST00000622516 METTL25Q8N6Q8 603 aa10.34□□□□□ -0.75
CUX1-221ENST00000622516 TRPV3Q8NET8 790 aa10.34□□□□□ -0.75
CUX1-221ENST00000622516 FBXO30Q8TB52 745 aa10.34□□□□□ -0.75
CUX1-221ENST00000622516 MAGEE2Q8TD90 523 aaPredicted RBP10.34□□□□□ -0.75
CUX1-221ENST00000622516 ASZ1Q8WWH4 475 aa10.34□□□□□ -0.75
CUX1-221ENST00000622516 SMG7Q92540 1137 aaKnown RBP10.34□□□□□ -0.75
CUX1-221ENST00000622516 DUS3LQ96G46 650 aaKnown RBP10.34□□□□□ -0.75
CUX1-221ENST00000622516 ZNF583Q96ND8 569 aa10.34□□□□□ -0.75
CUX1-221ENST00000622516 CHID1Q9BWS9 393 aa10.34□□□□□ -0.75
CUX1-221ENST00000622516 ANAPC2Q9UJX6 822 aa10.34□□□□□ -0.75
CUX1-221ENST00000622516 NUMA1Q14980 2115 aa10.34□□□□□ -0.75
CUX1-221ENST00000622516 CFAP99D6REC4 459 aa10.34□□□□□ -0.75
CUX1-221ENST00000622516 E7EQ34 232 aa10.34□□□□□ -0.75
CUX1-221ENST00000622516 DLGAP1O14490 977 aa10.34□□□□□ -0.75
CUX1-221ENST00000622516 EI24O14681 340 aa10.34□□□□□ -0.75
CUX1-221ENST00000622516 HNRNPRO43390 633 aaKnown RBP10.34□□□□□ -0.75
CUX1-221ENST00000622516 TFAP2AP05549 437 aa10.34□□□□□ -0.75
CUX1-221ENST00000622516 CISD3P0C7P0 127 aa10.34□□□□□ -0.75
CUX1-221ENST00000622516 BMP2P12643 396 aa10.34□□□□□ -0.75
CUX1-221ENST00000622516 DDX6P26196 483 aaKnown RBP eCLIP10.34□□□□□ -0.759e-7■■■□□ 16.7
CUX1-221ENST00000622516 IST1P53990 364 aa10.34□□□□□ -0.75
CUX1-221ENST00000622516 PWP1Q13610 501 aa10.34□□□□□ -0.75
CUX1-221ENST00000622516 ZNF284Q2VY69 593 aa10.34□□□□□ -0.75
CUX1-221ENST00000622516 TBPL2Q6SJ96 375 aa10.34□□□□□ -0.75
CUX1-221ENST00000622516 CHERPQ8IWX8 916 aaKnown RBP10.34□□□□□ -0.75
CUX1-221ENST00000622516 DPP10Q8N608 796 aa10.34□□□□□ -0.75
CUX1-221ENST00000622516 FAM47BQ8NA70 645 aa10.34□□□□□ -0.75
CUX1-221ENST00000622516 UBTD2Q8WUN7 234 aa10.34□□□□□ -0.75
CUX1-221ENST00000622516 NSMCE2Q96MF7 247 aa10.34□□□□□ -0.75
CUX1-221ENST00000622516 NRTNQ99748 197 aa10.34□□□□□ -0.75
CUX1-221ENST00000622516 CARS2Q9HA77 564 aaKnown RBP10.34□□□□□ -0.75
CUX1-221ENST00000622516 CCDC160A6NGH7 325 aa10.33□□□□□ -0.76
CUX1-221ENST00000622516 GFYI3L273 518 aa10.33□□□□□ -0.76
CUX1-221ENST00000622516 MMP20O60882 483 aa10.33□□□□□ -0.76
CUX1-221ENST00000622516 PEX14O75381 377 aa10.33□□□□□ -0.76
CUX1-221ENST00000622516 C8GP07360 202 aa10.33□□□□□ -0.76
CUX1-221ENST00000622516 CYP2A7P20853 494 aa10.33□□□□□ -0.76
CUX1-221ENST00000622516 CDKN2CP42773 168 aa10.33□□□□□ -0.76
CUX1-221ENST00000622516 SLC6A12P48065 614 aa10.33□□□□□ -0.76
CUX1-221ENST00000622516 LBX1P52954 281 aa10.33□□□□□ -0.76
CUX1-221ENST00000622516 CDH15P55291 814 aa10.33□□□□□ -0.76
CUX1-221ENST00000622516 EEFSECP57772 596 aaKnown RBP10.33□□□□□ -0.76
CUX1-221ENST00000622516 ST8SIA6P61647 398 aa10.33□□□□□ -0.76
CUX1-221ENST00000622516 LAPTM5Q13571 262 aa10.33□□□□□ -0.76
CUX1-221ENST00000622516 CNPY1Q3B7I2 92 aa10.33□□□□□ -0.76
CUX1-221ENST00000622516 XKR6Q5GH73 641 aa10.33□□□□□ -0.76
CUX1-221ENST00000622516 NHSL2Q5HYW2 709 aa10.33□□□□□ -0.76
CUX1-221ENST00000622516 KRT80Q6KB66 452 aa10.33□□□□□ -0.76
CUX1-221ENST00000622516 ENPP6Q6UWR7 440 aa10.33□□□□□ -0.76
CUX1-221ENST00000622516 CYP2U1Q7Z449 544 aa10.33□□□□□ -0.76
CUX1-221ENST00000622516 PTRH1Q86Y79 214 aaKnown RBP10.33□□□□□ -0.76
CUX1-221ENST00000622516 OFCC1Q8IZS5 231 aa10.33□□□□□ -0.76
CUX1-221ENST00000622516 ANKFN1Q8N957 763 aa10.33□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 52.6 ms