RNA–Protein interactions for RNA: ENST00000621181.4

CLK1-215, Transcript of CDC like kinase 1, humanhuman

TSL 1 (best) BASIC

Gene CLK1, Length 1,843 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK1-215ENST00000621181 CYP1B1Q16678 543 aa7.57□□□□□ -1.2
CLK1-215ENST00000621181 CYP2A13Q16696 494 aa7.57□□□□□ -1.2
CLK1-215ENST00000621181 SIRPB2Q5JXA9 342 aa7.57□□□□□ -1.2
CLK1-215ENST00000621181 YTHDF3Q7Z739 585 aaKnown RBP7.57□□□□□ -1.2
CLK1-215ENST00000621181 HOOK3Q86VS8 718 aa7.57□□□□□ -1.2
CLK1-215ENST00000621181 RFX6Q8HWS3 928 aa7.57□□□□□ -1.2
CLK1-215ENST00000621181 RHOT2Q8IXI1 618 aa7.57□□□□□ -1.2
CLK1-215ENST00000621181 CFAP206Q8IYR0 622 aa7.57□□□□□ -1.2
CLK1-215ENST00000621181 PRELID2Q8N945 189 aa7.57□□□□□ -1.2
CLK1-215ENST00000621181 ST6GALNAC3Q8NDV1 305 aa7.57□□□□□ -1.2
CLK1-215ENST00000621181 TEKT5Q96M29 485 aa7.57□□□□□ -1.2
CLK1-215ENST00000621181 ERP44Q9BS26 406 aa7.57□□□□□ -1.2
CLK1-215ENST00000621181 CCM2Q9BSQ5 444 aa7.57□□□□□ -1.2
CLK1-215ENST00000621181 ZNF552Q9H707 407 aaPredicted RBP7.57□□□□□ -1.2
CLK1-215ENST00000621181 GRHL1Q9NZI5 618 aa7.57□□□□□ -1.2
CLK1-215ENST00000621181 NDOR1Q9UHB4 597 aa7.57□□□□□ -1.2
CLK1-215ENST00000621181 PTRH2Q9Y3E5 179 aaKnown RBP7.57□□□□□ -1.2
CLK1-215ENST00000621181 ALG6Q9Y672 507 aa7.57□□□□□ -1.2
CLK1-215ENST00000621181 FER1L5A0AVI2 2057 aa7.57□□□□□ -1.2
CLK1-215ENST00000621181 ANKRD12Q6UB98 2062 aa7.57□□□□□ -1.2
CLK1-215ENST00000621181 APCP25054 2843 aa7.57□□□□□ -1.2
CLK1-215ENST00000621181 CSMD2Q7Z408 3487 aa7.57□□□□□ -1.2
CLK1-215ENST00000621181 LOC285095A0A1B0GVY8 99 aa7.57□□□□□ -1.2
CLK1-215ENST00000621181 C5orf60A6NFR6 353 aa7.57□□□□□ -1.2
CLK1-215ENST00000621181 C2orf74A8MZ97 194 aa7.57□□□□□ -1.2
CLK1-215ENST00000621181 MIF4GDA9UHW6 222 aaKnown RBP7.57□□□□□ -1.2
CLK1-215ENST00000621181 IFRD1O00458 451 aaPredicted RBP7.57□□□□□ -1.2
CLK1-215ENST00000621181 BTN3A1O00481 513 aa7.57□□□□□ -1.2
CLK1-215ENST00000621181 GAPDHSO14556 408 aaPredicted RBP7.57□□□□□ -1.2
CLK1-215ENST00000621181 STX7O15400 261 aaKnown RBP7.57□□□□□ -1.2
CLK1-215ENST00000621181 LRRTM2O43300 516 aa7.57□□□□□ -1.2
CLK1-215ENST00000621181 OR2B3O76000 313 aa7.57□□□□□ -1.2
CLK1-215ENST00000621181 FAM107AO95990 144 aa7.57□□□□□ -1.2
CLK1-215ENST00000621181 NUDT17P0C025 328 aa7.57□□□□□ -1.2
CLK1-215ENST00000621181 MYZAPP0CAP1 466 aa7.57□□□□□ -1.2
CLK1-215ENST00000621181 RALBP11234 206 aa7.57□□□□□ -1.2
CLK1-215ENST00000621181 PVRP15151 417 aa7.57□□□□□ -1.2
CLK1-215ENST00000621181 MARCKSL1P49006 195 aa7.57□□□□□ -1.2
CLK1-215ENST00000621181 SIX1Q15475 284 aaPredicted RBP7.57□□□□□ -1.2
CLK1-215ENST00000621181 KCTD19Q17RG1 926 aaPredicted RBP7.57□□□□□ -1.2
CLK1-215ENST00000621181 C1orf189Q5VU69 101 aa7.57□□□□□ -1.2
CLK1-215ENST00000621181 SPOCD1Q6ZMY3 1216 aa7.57□□□□□ -1.2
CLK1-215ENST00000621181 CUZD1Q86UP6 607 aa7.57□□□□□ -1.2
CLK1-215ENST00000621181 VSIG1Q86XK7 387 aa7.57□□□□□ -1.2
CLK1-215ENST00000621181 LILRA3Q8N6C8 439 aaPredicted RBP7.57□□□□□ -1.2
CLK1-215ENST00000621181 IPMKQ8NFU5 416 aa7.57□□□□□ -1.2
CLK1-215ENST00000621181 ZNF398Q8TD17 642 aa7.57□□□□□ -1.2
CLK1-215ENST00000621181 ZNF473Q8WTR7 871 aaKnown RBP7.57□□□□□ -1.2
CLK1-215ENST00000621181 TFB1MQ8WVM0 346 aaKnown RBP7.57□□□□□ -1.2
CLK1-215ENST00000621181 KRT35Q92764 455 aa7.57□□□□□ -1.2
CLK1-215ENST00000621181 DCUN1D1Q96GG9 259 aa7.57□□□□□ -1.2
CLK1-215ENST00000621181 RBM41Q96IZ5 413 aaKnown RBP7.57□□□□□ -1.2
CLK1-215ENST00000621181 RMDN2Q96LZ7 410 aa7.57□□□□□ -1.2
CLK1-215ENST00000621181 FERD3LQ96RJ6 166 aa7.57□□□□□ -1.2
CLK1-215ENST00000621181 CCT8L2Q96SF2 557 aa7.57□□□□□ -1.2
CLK1-215ENST00000621181 BARD1Q99728 777 aaKnown RBP7.57□□□□□ -1.2
CLK1-215ENST00000621181 TRIM51Q9BSJ1 452 aa7.57□□□□□ -1.2
CLK1-215ENST00000621181 PITPNM3Q9BZ71 974 aa7.57□□□□□ -1.2
CLK1-215ENST00000621181 P4HTMQ9NXG6 502 aa7.57□□□□□ -1.2
CLK1-215ENST00000621181 KLHL8Q9P2G9 620 aaPredicted RBP7.57□□□□□ -1.2
CLK1-215ENST00000621181 IFT80Q9P2H3 777 aaPredicted RBP7.57□□□□□ -1.2
CLK1-215ENST00000621181 PCYOX1Q9UHG3 505 aa7.57□□□□□ -1.2
CLK1-215ENST00000621181 CROCCQ5TZA2 2017 aa7.57□□□□□ -1.2
CLK1-215ENST00000621181 FBN2P35556 2912 aa7.56□□□□□ -1.2
CLK1-215ENST00000621181 PCSK5Q92824 1860 aa7.56□□□□□ -1.2
CLK1-215ENST00000621181 C3orf70A6NLC5 250 aaPredicted RBP7.56□□□□□ -1.2
CLK1-215ENST00000621181 BTN3A3O00478 584 aa7.56□□□□□ -1.2
CLK1-215ENST00000621181 NDUFAB1O14561 156 aa7.56□□□□□ -1.2
CLK1-215ENST00000621181 PHF2O75151 1096 aa7.56□□□□□ -1.2
CLK1-215ENST00000621181 SRP72O76094 671 aaKnown RBP7.56□□□□□ -1.2
CLK1-215ENST00000621181 KRT1P04264 644 aa7.56□□□□□ -1.2
CLK1-215ENST00000621181 CD63P08962 238 aa7.56□□□□□ -1.2
CLK1-215ENST00000621181 NFKB1P19838 968 aa7.56□□□□□ -1.2
CLK1-215ENST00000621181 ITGA3P26006 1051 aa7.56□□□□□ -1.2
CLK1-215ENST00000621181 CTNNA1P35221 906 aaKnown RBP7.56□□□□□ -1.2
CLK1-215ENST00000621181 SEC24CP53992 1094 aa7.56□□□□□ -1.2
CLK1-215ENST00000621181 DCDP81605 110 aaKnown RBP7.56□□□□□ -1.2
CLK1-215ENST00000621181 DHX9Q08211 1270 aaKnown RBP7.56□□□□□ -1.2
CLK1-215ENST00000621181 DHX34Q14147 1143 aaKnown RBP7.56□□□□□ -1.2
CLK1-215ENST00000621181 SLC9A5Q14940 896 aa7.56□□□□□ -1.2
CLK1-215ENST00000621181 BCL7AQ4VC05 210 aa7.56□□□□□ -1.2
CLK1-215ENST00000621181 TNFAIP8L3Q5GJ75 292 aa7.56□□□□□ -1.2
CLK1-215ENST00000621181 ZNF385CQ66K41 422 aaPredicted RBP7.56□□□□□ -1.2
CLK1-215ENST00000621181 RHBDD2Q6NTF9 364 aa7.56□□□□□ -1.2
CLK1-215ENST00000621181 AADACL2Q6P093 401 aa7.56□□□□□ -1.2
CLK1-215ENST00000621181 TTC27Q6P3X3 843 aa7.56□□□□□ -1.2
CLK1-215ENST00000621181 KDELC1Q6UW63 502 aa7.56□□□□□ -1.2
CLK1-215ENST00000621181 Q6ZS92 163 aa7.56□□□□□ -1.2
CLK1-215ENST00000621181 CDHR3Q6ZTQ4 885 aa7.56□□□□□ -1.2
CLK1-215ENST00000621181 BZW1Q7L1Q6 419 aaKnown RBP7.56□□□□□ -1.2
CLK1-215ENST00000621181 PID1Q7Z2X4 250 aa7.56□□□□□ -1.2
CLK1-215ENST00000621181 AMIGO1Q86WK6 493 aa7.56□□□□□ -1.2
CLK1-215ENST00000621181 OR2Y1Q8NGV0 311 aa7.56□□□□□ -1.2
CLK1-215ENST00000621181 HM13Q8TCT9 377 aa7.56□□□□□ -1.2
CLK1-215ENST00000621181 INPP5DQ92835 1189 aa7.56□□□□□ -1.2
CLK1-215ENST00000621181 MRGPRX2Q96LB1 330 aa7.56□□□□□ -1.2
CLK1-215ENST00000621181 TRAPPC9Q96Q05 1148 aa7.56□□□□□ -1.2
CLK1-215ENST00000621181 NAP1L3Q99457 506 aaPredicted RBP7.56□□□□□ -1.2
CLK1-215ENST00000621181 WDR77Q9BQA1 342 aaPredicted RBP7.56□□□□□ -1.2
CLK1-215ENST00000621181 TMEM109Q9BVC6 243 aa7.56□□□□□ -1.2
Retrieved 100 of 20,778 RNA–protein pairs in 30.4 ms