RNA–Protein interactions for RNA: ENST00000613444.4

USP39-220, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 2 BASIC

Gene USP39, Length 2,161 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-220ENST00000613444 MAGEC3Q8TD91 643 aa13.85□□□□□ -0.19
USP39-220ENST00000613444 RAD51AP1Q96B01 352 aa13.85□□□□□ -0.19
USP39-220ENST00000613444 KLHDC7BQ96G42 594 aa13.85□□□□□ -0.19
USP39-220ENST00000613444 C12orf66Q96MD2 445 aa13.85□□□□□ -0.19
USP39-220ENST00000613444 NRTNQ99748 197 aa13.85□□□□□ -0.19
USP39-220ENST00000613444 TCEAL2Q9H3H9 227 aaPredicted RBP13.85□□□□□ -0.19
USP39-220ENST00000613444 WASH6PQ9NQA3 447 aa13.85□□□□□ -0.19
USP39-220ENST00000613444 DNAJC11Q9NVH1 559 aa13.85□□□□□ -0.19
USP39-220ENST00000613444 SPATA6Q9NWH7 488 aaPredicted RBP13.85□□□□□ -0.19
USP39-220ENST00000613444 PCOLCE2Q9UKZ9 415 aa13.85□□□□□ -0.19
USP39-220ENST00000613444 STK38LQ9Y2H1 464 aa13.85□□□□□ -0.19
USP39-220ENST00000613444 PTGDR2Q9Y5Y4 395 aa13.85□□□□□ -0.19
USP39-220ENST00000613444 ATXN2Q99700 1313 aaKnown RBP13.85□□□□□ -0.19
USP39-220ENST00000613444 A6NCN8 305 aa13.85□□□□□ -0.19
USP39-220ENST00000613444 E7ENX8 843 aa13.85□□□□□ -0.19
USP39-220ENST00000613444 DCXO43602 365 aa13.85□□□□□ -0.19
USP39-220ENST00000613444 UBOX5O94941 541 aa13.85□□□□□ -0.19
USP39-220ENST00000613444 RASGRP1O95267 797 aa13.85□□□□□ -0.19
USP39-220ENST00000613444 TAP2Q03519 686 aa13.85□□□□□ -0.19
USP39-220ENST00000613444 TCHHL1Q5QJ38 904 aaPredicted RBP13.85□□□□□ -0.19
USP39-220ENST00000613444 ABRAXAS1Q6UWZ7 409 aa13.85□□□□□ -0.19
USP39-220ENST00000613444 MILR1Q7Z6M3 343 aa13.85□□□□□ -0.19
USP39-220ENST00000613444 THOC6Q86W42 341 aaKnown RBP13.85□□□□□ -0.19
USP39-220ENST00000613444 HID1Q8IV36 788 aa13.85□□□□□ -0.19
USP39-220ENST00000613444 MAML2Q8IZL2 1156 aaPredicted RBP13.85□□□□□ -0.19
USP39-220ENST00000613444 C19orf60Q96EN9 201 aa13.85□□□□□ -0.19
USP39-220ENST00000613444 HSPA12BQ96MM6 686 aa13.85□□□□□ -0.19
USP39-220ENST00000613444 CCDC28BQ9BUN5 200 aa13.85□□□□□ -0.19
USP39-220ENST00000613444 SGPP1Q9BX95 441 aa13.85□□□□□ -0.19
USP39-220ENST00000613444 NUSAP1Q9BXS6 441 aaKnown RBP13.85□□□□□ -0.19
USP39-220ENST00000613444 AASDHPPTQ9NRN7 309 aa13.85□□□□□ -0.19
USP39-220ENST00000613444 ANGPTL3Q9Y5C1 460 aa13.85□□□□□ -0.19
USP39-220ENST00000613444 OR52A4PA6NMU1 304 aa13.84□□□□□ -0.19
USP39-220ENST00000613444 PIP5K1BO14986 540 aa13.84□□□□□ -0.19
USP39-220ENST00000613444 KATNA1O75449 491 aa13.84□□□□□ -0.19
USP39-220ENST00000613444 CAPN1P07384 714 aa13.84□□□□□ -0.19
USP39-220ENST00000613444 EBLN1P0CF75 366 aa13.84□□□□□ -0.19
USP39-220ENST00000613444 PCDH1Q08174 1060 aa13.84□□□□□ -0.19
USP39-220ENST00000613444 PRKG2Q13237 762 aa13.84□□□□□ -0.19
USP39-220ENST00000613444 FASTKQ14296 549 aaKnown RBP13.84□□□□□ -0.19
USP39-220ENST00000613444 TCEA2Q15560 299 aa13.84□□□□□ -0.19
USP39-220ENST00000613444 FAM91A1Q658Y4 838 aa13.84□□□□□ -0.19
USP39-220ENST00000613444 LAYNQ6UX15 382 aa13.84□□□□□ -0.19
USP39-220ENST00000613444 GPBAR1Q8TDU6 330 aa13.84□□□□□ -0.19
USP39-220ENST00000613444 DNASE2BQ8WZ79 361 aa13.84□□□□□ -0.19
USP39-220ENST00000613444 ATP6V1E2Q96A05 226 aa13.84□□□□□ -0.19
USP39-220ENST00000613444 IL17FQ96PD4 163 aa13.84□□□□□ -0.19
USP39-220ENST00000613444 DUSP15Q9H1R2 295 aaPredicted RBP13.84□□□□□ -0.19
USP39-220ENST00000613444 TRIT1Q9H3H1 467 aaKnown RBP13.84□□□□□ -0.19
USP39-220ENST00000613444 SAR1AQ9NR31 198 aa13.84□□□□□ -0.19
USP39-220ENST00000613444 ZFP69BQ9UJL9 534 aa13.84□□□□□ -0.19
USP39-220ENST00000613444 PLAGL1Q9UM63 463 aa13.84□□□□□ -0.19
USP39-220ENST00000613444 RNF11Q9Y3C5 154 aa13.84□□□□□ -0.19
USP39-220ENST00000613444 SNRNP200O75643 2136 aaKnown RBP13.84□□□□□ -0.19
USP39-220ENST00000613444 HEATR5BQ9P2D3 2071 aa13.84□□□□□ -0.19
USP39-220ENST00000613444 KCNE1BA0A087WTH5 132 aa13.83□□□□□ -0.19
USP39-220ENST00000613444 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa13.83□□□□□ -0.19
USP39-220ENST00000613444 GIPC1O14908 333 aa13.83□□□□□ -0.19
USP39-220ENST00000613444 RPN2P04844 631 aa13.83□□□□□ -0.19
USP39-220ENST00000613444 ENO1P06733 434 aaKnown RBP13.83□□□□□ -0.19
USP39-220ENST00000613444 PNLIPRP1P54315 467 aa13.83□□□□□ -0.19
USP39-220ENST00000613444 HNRNPH2P55795 449 aaKnown RBP13.83□□□□□ -0.19
USP39-220ENST00000613444 TBPL1P62380 186 aa13.83□□□□□ -0.19
USP39-220ENST00000613444 RACK1P63244 317 aaKnown RBP13.83□□□□□ -0.19
USP39-220ENST00000613444 CDC16Q13042 620 aa13.83□□□□□ -0.19
USP39-220ENST00000613444 RPE65Q16518 533 aa13.83□□□□□ -0.19
USP39-220ENST00000613444 XKR7Q5GH72 579 aa13.83□□□□□ -0.19
USP39-220ENST00000613444 SPDYAQ5MJ70 313 aa13.83□□□□□ -0.19
USP39-220ENST00000613444 METTL21CQ5VZV1 264 aa13.83□□□□□ -0.19
USP39-220ENST00000613444 LARP4Q71RC2 724 aaKnown RBP eCLIP13.83□□□□□ -0.19
USP39-220ENST00000613444 IQCHQ86VS3 1027 aa13.83□□□□□ -0.19
USP39-220ENST00000613444 TMEFF1Q8IYR6 380 aa13.83□□□□□ -0.19
USP39-220ENST00000613444 RGL4Q8IZJ4 473 aa13.83□□□□□ -0.19
USP39-220ENST00000613444 SNX31Q8N9S9 440 aa13.83□□□□□ -0.19
USP39-220ENST00000613444 ACTRT2Q8TDY3 377 aa13.83□□□□□ -0.19
USP39-220ENST00000613444 MED8Q96G25 268 aa13.83□□□□□ -0.19
USP39-220ENST00000613444 TM9SF3Q9HD45 589 aa13.83□□□□□ -0.19
USP39-220ENST00000613444 TRPS1Q9UHF7 1281 aa13.83□□□□□ -0.19
USP39-220ENST00000613444 TTC28Q96AY4 2481 aa13.83□□□□□ -0.19
USP39-220ENST00000613444 PRAMEF33A0A0G2JMD5 474 aa13.83□□□□□ -0.2
USP39-220ENST00000613444 PDZK1P1A8MUH7 402 aa13.83□□□□□ -0.2
USP39-220ENST00000613444 CAPN14A8MX76 684 aa13.83□□□□□ -0.2
USP39-220ENST00000613444 E9PBE3 544 aa13.83□□□□□ -0.2
USP39-220ENST00000613444 KLHL41O60662 606 aa13.83□□□□□ -0.2
USP39-220ENST00000613444 WFS1O76024 890 aa13.83□□□□□ -0.2
USP39-220ENST00000613444 TNFP01375 233 aa13.83□□□□□ -0.2
USP39-220ENST00000613444 CD38P28907 300 aa13.83□□□□□ -0.2
USP39-220ENST00000613444 FNTBP49356 437 aa13.83□□□□□ -0.2
USP39-220ENST00000613444 HTR6P50406 440 aa13.83□□□□□ -0.2
USP39-220ENST00000613444 DMTNQ08495 405 aa13.83□□□□□ -0.2
USP39-220ENST00000613444 E2F2Q14209 437 aa13.83□□□□□ -0.2
USP39-220ENST00000613444 CYP2A13Q16696 494 aa13.83□□□□□ -0.2
USP39-220ENST00000613444 GGTA1PQ4G0N0 100 aa13.83□□□□□ -0.2
USP39-220ENST00000613444 ZNF542PQ5EBM4 170 aa13.83□□□□□ -0.2
USP39-220ENST00000613444 TJAP1Q5JTD0 557 aa13.83□□□□□ -0.2
USP39-220ENST00000613444 SLC30A9Q6PML9 568 aa13.83□□□□□ -0.2
USP39-220ENST00000613444 ACAD11Q709F0 780 aa13.83□□□□□ -0.2
USP39-220ENST00000613444 DCP2Q8IU60 420 aaKnown RBP13.83□□□□□ -0.2
USP39-220ENST00000613444 SYTL1Q8IYJ3 562 aa13.83□□□□□ -0.2
USP39-220ENST00000613444 CHCHD4Q8N4Q1 142 aa13.83□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 23.3 ms