RNA–Protein interactions for RNA: ENST00000599848.5

UPF1-207, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 1 (best) BASIC

Gene UPF1, Length 5,311 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-207ENST00000599848 PRDX6P30041 224 aa20.05■□□□□ 0.8
UPF1-207ENST00000599848 LBX1P52954 281 aa20.05■□□□□ 0.8
UPF1-207ENST00000599848 CMC1Q7Z7K0 106 aa20.05■□□□□ 0.8
UPF1-207ENST00000599848 HORMAD2Q8N7B1 307 aa20.05■□□□□ 0.8
UPF1-207ENST00000599848 TFGQ92734 400 aaPredicted RBP20.05■□□□□ 0.8
UPF1-207ENST00000599848 PDP1Q9P0J1 537 aaPredicted RBP20.05■□□□□ 0.8
UPF1-207ENST00000599848 WNT6Q9Y6F9 365 aa20.05■□□□□ 0.8
UPF1-207ENST00000599848 HSD11B1P28845 292 aa20.05■□□□□ 0.8
UPF1-207ENST00000599848 SLBPQ14493 270 aaKnown RBP eCLIP20.05■□□□□ 0.8
UPF1-207ENST00000599848 TXNDC8Q6A555 127 aa20.05■□□□□ 0.8
UPF1-207ENST00000599848 CIR1Q86X95 450 aaPredicted RBP20.05■□□□□ 0.8
UPF1-207ENST00000599848 GIPC3Q8TF64 312 aa20.05■□□□□ 0.8
UPF1-207ENST00000599848 MOAP1Q96BY2 351 aa20.05■□□□□ 0.8
UPF1-207ENST00000599848 IQCMA0A1B0GVH7 501 aa20.04■□□□□ 0.8
UPF1-207ENST00000599848 YJEFN3A6XGL0 299 aa20.04■□□□□ 0.8
UPF1-207ENST00000599848 GPIP06744 558 aa20.04■□□□□ 0.8
UPF1-207ENST00000599848 FGL2Q14314 439 aa20.04■□□□□ 0.8
UPF1-207ENST00000599848 TOR1AIP1Q5JTV8 583 aa20.04■□□□□ 0.8
UPF1-207ENST00000599848 IQCF2Q8IXL9 164 aa20.04■□□□□ 0.8
UPF1-207ENST00000599848 SPATA6LQ8N4H0 392 aa20.04■□□□□ 0.8
UPF1-207ENST00000599848 B3GALT6Q96L58 329 aa20.04■□□□□ 0.8
UPF1-207ENST00000599848 DHRS1Q96LJ7 313 aa20.04■□□□□ 0.8
UPF1-207ENST00000599848 LPIN3Q9BQK8 851 aa20.04■□□□□ 0.8
UPF1-207ENST00000599848 ERI3O43414 337 aaKnown RBP20.04■□□□□ 0.8
UPF1-207ENST00000599848 CAPZA1P52907 286 aa20.04■□□□□ 0.8
UPF1-207ENST00000599848 NR1H2P55055 460 aa20.04■□□□□ 0.8
UPF1-207ENST00000599848 HNRNPKP61978 463 aaKnown RBP eCLIP20.04■□□□□ 0.84e-11■■■□□ 15.5
UPF1-207ENST00000599848 RIN1Q13671 783 aa20.04■□□□□ 0.8
UPF1-207ENST00000599848 DPYSL2Q16555 572 aa20.04■□□□□ 0.8
UPF1-207ENST00000599848 CLEC20AQ6ZU45 233 aa20.04■□□□□ 0.8
UPF1-207ENST00000599848 NXNL1Q96CM4 212 aa20.04■□□□□ 0.8
UPF1-207ENST00000599848 NMD3Q96D46 503 aaKnown RBP20.04■□□□□ 0.8
UPF1-207ENST00000599848 PLLPQ9Y342 182 aa20.04■□□□□ 0.8
UPF1-207ENST00000599848 TMED5Q9Y3A6 229 aa20.04■□□□□ 0.8
UPF1-207ENST00000599848 MROH2AA6NES4 1674 aa20.04■□□□□ 0.8
UPF1-207ENST00000599848 IGLV3-22A0A075B6J6 115 aa20.04■□□□□ 0.8
UPF1-207ENST00000599848 GMFGO60234 142 aa20.04■□□□□ 0.8
UPF1-207ENST00000599848 LATS1O95835 1130 aa20.04■□□□□ 0.8
UPF1-207ENST00000599848 APOC1P02654 83 aa20.04■□□□□ 0.8
UPF1-207ENST00000599848 IGFBP5P24593 272 aa20.04■□□□□ 0.8
UPF1-207ENST00000599848 VLDLRP98155 873 aa20.04■□□□□ 0.8
UPF1-207ENST00000599848 PUM1Q14671 1186 aaKnown RBP eCLIP20.04■□□□□ 0.8
UPF1-207ENST00000599848 HEATR4Q86WZ0 1026 aa20.04■□□□□ 0.8
UPF1-207ENST00000599848 ZNF433Q8N7K0 673 aaPredicted RBP20.04■□□□□ 0.8
UPF1-207ENST00000599848 TCRBV21S2A2A0A5A6 115 aa20.04■□□□□ 0.8
UPF1-207ENST00000599848 TSPAN5P62079 268 aa20.04■□□□□ 0.8
UPF1-207ENST00000599848 KCNJ2P63252 427 aa20.04■□□□□ 0.8
UPF1-207ENST00000599848 OR6N1Q8NGY5 312 aa20.04■□□□□ 0.8
UPF1-207ENST00000599848 FBXO9Q9UK97 447 aaPredicted RBP20.04■□□□□ 0.8
UPF1-207ENST00000599848 IQCF5A8MTL0 148 aa20.03■□□□□ 0.8
UPF1-207ENST00000599848 A8MUI8 341 aa20.03■□□□□ 0.8
UPF1-207ENST00000599848 CBX6O95503 412 aa20.03■□□□□ 0.8
UPF1-207ENST00000599848 GSTT2BP0CG30 244 aa20.03■□□□□ 0.8
UPF1-207ENST00000599848 ANPEPP15144 967 aa20.03■□□□□ 0.8
UPF1-207ENST00000599848 HNF1BP35680 557 aa20.03■□□□□ 0.8
UPF1-207ENST00000599848 LIPEQ05469 1076 aa20.03■□□□□ 0.8
UPF1-207ENST00000599848 ZNF792Q3KQV3 632 aa20.03■□□□□ 0.8
UPF1-207ENST00000599848 GLIS3Q8NEA6 775 aa20.03■□□□□ 0.8
UPF1-207ENST00000599848 SMARCD2Q92925 531 aa20.03■□□□□ 0.8
UPF1-207ENST00000599848 TCF7L1Q9HCS4 588 aa20.03■□□□□ 0.8
UPF1-207ENST00000599848 ARL8BQ9NVJ2 186 aa20.03■□□□□ 0.8
UPF1-207ENST00000599848 GRID2O43424 1007 aa20.03■□□□□ 0.8
UPF1-207ENST00000599848 PREPP48147 710 aa20.03■□□□□ 0.8
UPF1-207ENST00000599848 CTBP2P56545 445 aa20.03■□□□□ 0.8
UPF1-207ENST00000599848 RAB39AQ14964 217 aa20.03■□□□□ 0.8
UPF1-207ENST00000599848 ADNP2Q6IQ32 1131 aa20.03■□□□□ 0.8
UPF1-207ENST00000599848 ERN2Q76MJ5 926 aaKnown RBP20.03■□□□□ 0.8
UPF1-207ENST00000599848 TMEM184CQ9NVA4 438 aa20.03■□□□□ 0.8
UPF1-207ENST00000599848 CNTN6Q9UQ52 1028 aa20.03■□□□□ 0.8
UPF1-207ENST00000599848 NDUFS4O43181 175 aa20.03■□□□□ 0.8
UPF1-207ENST00000599848 SOCS5O75159 536 aa20.03■□□□□ 0.8
UPF1-207ENST00000599848 IL33O95760 270 aa20.03■□□□□ 0.8
UPF1-207ENST00000599848 ZIK1Q3SY52 487 aaPredicted RBP20.03■□□□□ 0.8
UPF1-207ENST00000599848 TAS1R3Q7RTX0 852 aa20.03■□□□□ 0.8
UPF1-207ENST00000599848 OR5L2Q8NGL0 311 aa20.03■□□□□ 0.8
UPF1-207ENST00000599848 CAMTA1Q9Y6Y1 1673 aa20.03■□□□□ 0.8
UPF1-207ENST00000599848 IGKV6D-41A0A0C4DH26 115 aa20.03■□□□□ 0.8
UPF1-207ENST00000599848 RCBTB2O95199 551 aa20.03■□□□□ 0.8
UPF1-207ENST00000599848 GALTP07902 379 aa20.03■□□□□ 0.8
UPF1-207ENST00000599848 UGT1A3P35503 534 aa20.03■□□□□ 0.8
UPF1-207ENST00000599848 CCNHP51946 323 aaPredicted RBP20.03■□□□□ 0.8
UPF1-207ENST00000599848 SLC9A4Q6AI14 798 aa20.03■□□□□ 0.8
UPF1-207ENST00000599848 TRABD2AQ86V40 505 aa20.03■□□□□ 0.8
UPF1-207ENST00000599848 Q8N9G6 341 aaPredicted RBP20.03■□□□□ 0.8
UPF1-207ENST00000599848 SETD6Q8TBK2 473 aa20.03■□□□□ 0.8
UPF1-207ENST00000599848 RPS24P62847 133 aaKnown RBP20.02■□□□□ 0.8
UPF1-207ENST00000599848 RBP7Q96R05 134 aa20.02■□□□□ 0.8
UPF1-207ENST00000599848 SSU72Q9NP77 194 aaKnown RBP20.02■□□□□ 0.8
UPF1-207ENST00000599848 GRIP1Q9Y3R0 1128 aa20.02■□□□□ 0.8
UPF1-207ENST00000599848 AP4B1Q9Y6B7 739 aa20.02■□□□□ 0.8
UPF1-207ENST00000599848 SLC22A2O15244 555 aa20.02■□□□□ 0.8
UPF1-207ENST00000599848 KDELR3O43731 214 aa20.02■□□□□ 0.8
UPF1-207ENST00000599848 SLC25A3Q00325 362 aa20.02■□□□□ 0.8
UPF1-207ENST00000599848 DRICH1Q6PGQ1 229 aaPredicted RBP20.02■□□□□ 0.8
UPF1-207ENST00000599848 ASB6Q9NWX5 421 aa20.02■□□□□ 0.8
UPF1-207ENST00000599848 FAM25EA8MYX2 175 aa20.02■□□□□ 0.8
UPF1-207ENST00000599848 EIF5AP63241 154 aaKnown RBP20.02■□□□□ 0.8
UPF1-207ENST00000599848 SOWAHAQ2M3V2 549 aa20.02■□□□□ 0.8
UPF1-207ENST00000599848 RAB43Q86YS6 212 aa20.02■□□□□ 0.8
UPF1-207ENST00000599848 TM9SF4Q92544 642 aa20.02■□□□□ 0.8
Retrieved 100 of 20,778 RNA–protein pairs in 29.5 ms