RNA–Protein interactions for RNA: ENST00000599543.3

PNKP-213, Transcript of polynucleotide kinase 3'-phosphatase, humanhuman

TSL 3

Gene PNKP, Length 986 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PNKP-213ENST00000599543 ACVR1Q04771 509 aa18.06■□□□□ 0.48
PNKP-213ENST00000599543 HSPA14Q0VDF9 509 aa18.06■□□□□ 0.48
PNKP-213ENST00000599543 ATP1A4Q13733 1029 aa18.06■□□□□ 0.48
PNKP-213ENST00000599543 KCNJ11Q14654 390 aa18.06■□□□□ 0.48
PNKP-213ENST00000599543 KIR2DS3Q14952 304 aa18.06■□□□□ 0.48
PNKP-213ENST00000599543 SLC5A12Q1EHB4 618 aa18.06■□□□□ 0.48
PNKP-213ENST00000599543 NADK2Q4G0N4 442 aa18.06■□□□□ 0.48
PNKP-213ENST00000599543 AARS2Q5JTZ9 985 aaKnown RBP18.06■□□□□ 0.48
PNKP-213ENST00000599543 ZNF385CQ66K41 422 aaPredicted RBP18.06■□□□□ 0.48
PNKP-213ENST00000599543 C4orf22Q6V702 233 aa18.06■□□□□ 0.48
PNKP-213ENST00000599543 ZNF534Q76KX8 674 aa18.06■□□□□ 0.48
PNKP-213ENST00000599543 SLC22A15Q8IZD6 547 aa18.06■□□□□ 0.48
PNKP-213ENST00000599543 ZBTB2Q8N680 514 aa18.06■□□□□ 0.48
PNKP-213ENST00000599543 GRK7Q8WTQ7 553 aa18.06■□□□□ 0.48
PNKP-213ENST00000599543 PEX13Q92968 403 aa18.06■□□□□ 0.48
PNKP-213ENST00000599543 ZNF778Q96MU6 729 aa18.06■□□□□ 0.48
PNKP-213ENST00000599543 KRT12Q99456 494 aa18.06■□□□□ 0.48
PNKP-213ENST00000599543 CHRNA10Q9GZZ6 450 aa18.06■□□□□ 0.48
PNKP-213ENST00000599543 ASIC3Q9UHC3 531 aa18.06■□□□□ 0.48
PNKP-213ENST00000599543 GPN3Q9UHW5 284 aaPredicted RBP18.06■□□□□ 0.48
PNKP-213ENST00000599543 PCDHGB7Q9Y5F8 929 aa18.06■□□□□ 0.48
PNKP-213ENST00000599543 VPS4BO75351 444 aa18.05■□□□□ 0.48
PNKP-213ENST00000599543 AVILO75366 819 aa18.05■□□□□ 0.48
PNKP-213ENST00000599543 CEACAM4O75871 244 aa18.05■□□□□ 0.48
PNKP-213ENST00000599543 APOA4P06727 396 aa18.05■□□□□ 0.48
PNKP-213ENST00000599543 ATXN8OSP0DMR3 200 aa18.05■□□□□ 0.48
PNKP-213ENST00000599543 MGAT1P26572 445 aa18.05■□□□□ 0.48
PNKP-213ENST00000599543 OTX2P32243 289 aa18.05■□□□□ 0.48
PNKP-213ENST00000599543 CCR7P32248 378 aa18.05■□□□□ 0.48
PNKP-213ENST00000599543 RAB28P51157 221 aa18.05■□□□□ 0.48
PNKP-213ENST00000599543 SRSF1Q07955 248 aaKnown RBP eCLIP18.05■□□□□ 0.48
PNKP-213ENST00000599543 C1orf189Q5VU69 101 aa18.05■□□□□ 0.48
PNKP-213ENST00000599543 MLIPQ5VWP3 458 aa18.05■□□□□ 0.48
PNKP-213ENST00000599543 RHBDD2Q6NTF9 364 aa18.05■□□□□ 0.48
PNKP-213ENST00000599543 FDCSPQ8NFU4 85 aa18.05■□□□□ 0.48
PNKP-213ENST00000599543 FLVCR1-AS1Q8TAF5 88 aa18.05■□□□□ 0.48
PNKP-213ENST00000599543 CPT1CQ8TCG5 803 aa18.05■□□□□ 0.48
PNKP-213ENST00000599543 PROKR1Q8TCW9 393 aa18.05■□□□□ 0.48
PNKP-213ENST00000599543 ASZ1Q8WWH4 475 aa18.05■□□□□ 0.48
PNKP-213ENST00000599543 SGSM3Q96HU1 749 aa18.05■□□□□ 0.48
PNKP-213ENST00000599543 SPRTNQ9H040 489 aaPredicted RBP18.05■□□□□ 0.48
PNKP-213ENST00000599543 EIF2B3Q9NR50 452 aaKnown RBP18.05■□□□□ 0.48
PNKP-213ENST00000599543 CATSPERZQ9NTU4 200 aa18.05■□□□□ 0.48
PNKP-213ENST00000599543 TXLNGQ9NUQ3 528 aa18.05■□□□□ 0.48
PNKP-213ENST00000599543 GPR83Q9NYM4 423 aa18.05■□□□□ 0.48
PNKP-213ENST00000599543 NDOR1Q9UHB4 597 aa18.05■□□□□ 0.48
PNKP-213ENST00000599543 VPS4AQ9UN37 437 aa18.05■□□□□ 0.48
PNKP-213ENST00000599543 SRPK3Q9UPE1 567 aa18.05■□□□□ 0.48
PNKP-213ENST00000599543 SHANK1Q9Y566 2161 aa18.05■□□□□ 0.48
PNKP-213ENST00000599543 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP18.04■□□□□ 0.48
PNKP-213ENST00000599543 CLEC18AA5D8T8 446 aa18.04■□□□□ 0.48
PNKP-213ENST00000599543 A6NL46 340 aa18.04■□□□□ 0.48
PNKP-213ENST00000599543 H3BMH7 237 aa18.04■□□□□ 0.48
PNKP-213ENST00000599543 TTI1O43156 1089 aa18.04■□□□□ 0.48
PNKP-213ENST00000599543 HCRTR1O43613 425 aa18.04■□□□□ 0.48
PNKP-213ENST00000599543 DPM1O60762 260 aa18.04■□□□□ 0.48
PNKP-213ENST00000599543 URI1O94763 535 aaPredicted RBP18.04■□□□□ 0.48
PNKP-213ENST00000599543 CBSLP0DN79 551 aa18.04■□□□□ 0.48
PNKP-213ENST00000599543 TPSB2P20231 275 aa18.04■□□□□ 0.48
PNKP-213ENST00000599543 PEBP1P30086 187 aaKnown RBP18.04■□□□□ 0.48
PNKP-213ENST00000599543 PKLRP30613 574 aa18.04■□□□□ 0.48
PNKP-213ENST00000599543 CBSP35520 551 aa18.04■□□□□ 0.48
PNKP-213ENST00000599543 FOLR3P41439 243 aa18.04■□□□□ 0.48
PNKP-213ENST00000599543 GABRA4P48169 554 aa18.04■□□□□ 0.48
PNKP-213ENST00000599543 DCDP81605 110 aaKnown RBP18.04■□□□□ 0.48
PNKP-213ENST00000599543 SEMA3AQ14563 771 aa18.04■□□□□ 0.48
PNKP-213ENST00000599543 TMED2Q15363 201 aa18.04■□□□□ 0.48
PNKP-213ENST00000599543 TPSAB1Q15661 275 aa18.04■□□□□ 0.48
PNKP-213ENST00000599543 TLDC1Q6P9B6 456 aa18.04■□□□□ 0.48
PNKP-213ENST00000599543 CES3Q6UWW8 571 aa18.04■□□□□ 0.48
PNKP-213ENST00000599543 CLEC18BQ6UXF7 455 aa18.04■□□□□ 0.48
PNKP-213ENST00000599543 MPP5Q8N3R9 675 aa18.04■□□□□ 0.48
PNKP-213ENST00000599543 ZNF655Q8N720 491 aaPredicted RBP18.04■□□□□ 0.48
PNKP-213ENST00000599543 CLEC18CQ8NCF0 446 aa18.04■□□□□ 0.48
PNKP-213ENST00000599543 CFAP61Q8NHU2 1237 aa18.04■□□□□ 0.48
PNKP-213ENST00000599543 IP6K3Q96PC2 410 aa18.04■□□□□ 0.48
PNKP-213ENST00000599543 GBP5Q96PP8 586 aa18.04■□□□□ 0.48
PNKP-213ENST00000599543 NUDT9Q9BW91 350 aa18.04■□□□□ 0.48
PNKP-213ENST00000599543 TRIM31Q9BZY9 425 aa18.04■□□□□ 0.48
PNKP-213ENST00000599543 SYBUQ9NX95 663 aa18.04■□□□□ 0.48
PNKP-213ENST00000599543 IFT80Q9P2H3 777 aaPredicted RBP18.04■□□□□ 0.48
PNKP-213ENST00000599543 PCYOX1Q9UHG3 505 aa18.04■□□□□ 0.48
PNKP-213ENST00000599543 PLCL2Q9UPR0 1127 aa18.04■□□□□ 0.48
PNKP-213ENST00000599543 ESPL1Q14674 2120 aa18.04■□□□□ 0.48
PNKP-213ENST00000599543 UTP20O75691 2785 aaKnown RBP18.03■□□□□ 0.48
PNKP-213ENST00000599543 NUP210LQ5VU65 1888 aa18.03■□□□□ 0.48
PNKP-213ENST00000599543 PCSK5Q92824 1860 aa18.03■□□□□ 0.48
PNKP-213ENST00000599543 IQCF5A8MTL0 148 aa18.03■□□□□ 0.48
PNKP-213ENST00000599543 KLF7O75840 302 aaPredicted RBP18.03■□□□□ 0.48
PNKP-213ENST00000599543 CD63P08962 238 aa18.03■□□□□ 0.48
PNKP-213ENST00000599543 TTPAP49638 278 aa18.03■□□□□ 0.48
PNKP-213ENST00000599543 DR1Q01658 176 aa18.03■□□□□ 0.48
PNKP-213ENST00000599543 PTK6Q13882 451 aa18.03■□□□□ 0.48
PNKP-213ENST00000599543 UNC5DQ6UXZ4 953 aa18.03■□□□□ 0.48
PNKP-213ENST00000599543 MRGPREQ86SM8 312 aa18.03■□□□□ 0.48
PNKP-213ENST00000599543 LDB1Q86U70 411 aaPredicted RBP18.03■□□□□ 0.48
PNKP-213ENST00000599543 HPS6Q86YV9 775 aa18.03■□□□□ 0.48
PNKP-213ENST00000599543 VRK3Q8IV63 474 aa18.03■□□□□ 0.48
PNKP-213ENST00000599543 DCUN1D3Q8IWE4 304 aa18.03■□□□□ 0.48
PNKP-213ENST00000599543 GSDMBQ8TAX9 411 aa18.03■□□□□ 0.48
Retrieved 100 of 20,778 RNA–protein pairs in 40.8 ms