RNA–Protein interactions for RNA: ENST00000596814.5

VRK3-212, Transcript of vaccinia related kinase 3, humanhuman

TSL 2

Gene VRK3, Length 1,736 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-212ENST00000596814 RABEP2Q9H5N1 569 aa14.23□□□□□ -0.13
VRK3-212ENST00000596814 SEMA4BQ9NPR2 832 aaPredicted RBP14.23□□□□□ -0.13
VRK3-212ENST00000596814 POT1Q9NUX5 634 aa14.23□□□□□ -0.13
VRK3-212ENST00000596814 LNPEPQ9UIQ6 1025 aa14.23□□□□□ -0.13
VRK3-212ENST00000596814 R4GN57 208 aa14.23□□□□□ -0.13
VRK3-212ENST00000596814 TRBV23OR9-2A0A075B6M9 112 aa14.22□□□□□ -0.13
VRK3-212ENST00000596814 ZNF839A8K0R7 811 aa14.22□□□□□ -0.13
VRK3-212ENST00000596814 B4DGG1 531 aa14.22□□□□□ -0.13
VRK3-212ENST00000596814 LMO7DNF2Z398 122 aa14.22□□□□□ -0.13
VRK3-212ENST00000596814 HSD17B2P37059 387 aa14.22□□□□□ -0.13
VRK3-212ENST00000596814 RXRGP48443 463 aa14.22□□□□□ -0.13
VRK3-212ENST00000596814 TBPL1P62380 186 aa14.22□□□□□ -0.13
VRK3-212ENST00000596814 PRKAA1Q13131 559 aa14.22□□□□□ -0.13
VRK3-212ENST00000596814 NAE1Q13564 534 aa14.22□□□□□ -0.13
VRK3-212ENST00000596814 RBBP7Q16576 425 aa14.22□□□□□ -0.13
VRK3-212ENST00000596814 CPLX4Q7Z7G2 160 aa14.22□□□□□ -0.13
VRK3-212ENST00000596814 CUZD1Q86UP6 607 aa14.22□□□□□ -0.13
VRK3-212ENST00000596814 KLHDC8AQ8IYD2 350 aa14.22□□□□□ -0.13
VRK3-212ENST00000596814 NAGSQ8N159 534 aa14.22□□□□□ -0.13
VRK3-212ENST00000596814 ZNF781Q8N8C0 355 aa14.22□□□□□ -0.13
VRK3-212ENST00000596814 OR52E1Q8NGJ3 308 aa14.22□□□□□ -0.13
VRK3-212ENST00000596814 SLC37A2Q8TED4 501 aa14.22□□□□□ -0.13
VRK3-212ENST00000596814 PATE1Q8WXA2 126 aa14.22□□□□□ -0.13
VRK3-212ENST00000596814 LOXL4Q96JB6 756 aa14.22□□□□□ -0.13
VRK3-212ENST00000596814 MENTQ9BUN1 341 aa14.22□□□□□ -0.13
VRK3-212ENST00000596814 RAB11FIP5Q9BXF6 653 aa14.22□□□□□ -0.13
VRK3-212ENST00000596814 SHCBP1LQ9BZQ2 653 aa14.22□□□□□ -0.13
VRK3-212ENST00000596814 ILKAPQ9H0C8 392 aaPredicted RBP14.22□□□□□ -0.13
VRK3-212ENST00000596814 KIR3DX1Q9H7L2 352 aa14.22□□□□□ -0.13
VRK3-212ENST00000596814 ZBTB26Q9HCK0 441 aa14.22□□□□□ -0.13
VRK3-212ENST00000596814 RAB23Q9ULC3 237 aa14.22□□□□□ -0.13
VRK3-212ENST00000596814 RAP2CQ9Y3L5 183 aa14.22□□□□□ -0.13
VRK3-212ENST00000596814 PRAMEF33A0A0G2JMD5 474 aa14.21□□□□□ -0.13
VRK3-212ENST00000596814 YY2O15391 372 aa14.21□□□□□ -0.13
VRK3-212ENST00000596814 EPN2O95208 641 aa14.21□□□□□ -0.13
VRK3-212ENST00000596814 VIPP01282 170 aa14.21□□□□□ -0.13
VRK3-212ENST00000596814 ANXA6P08133 673 aa14.21□□□□□ -0.13
VRK3-212ENST00000596814 EPB42P16452 691 aa14.21□□□□□ -0.13
VRK3-212ENST00000596814 XRCC1P18887 633 aaPredicted RBP14.21□□□□□ -0.13
VRK3-212ENST00000596814 MPSTP25325 297 aa14.21□□□□□ -0.13
VRK3-212ENST00000596814 PKLRP30613 574 aa14.21□□□□□ -0.13
VRK3-212ENST00000596814 RAB28P51157 221 aa14.21□□□□□ -0.13
VRK3-212ENST00000596814 CYP2A13Q16696 494 aa14.21□□□□□ -0.13
VRK3-212ENST00000596814 ZNF423Q2M1K9 1284 aa14.21□□□□□ -0.13
VRK3-212ENST00000596814 CAPN13Q6MZZ7 669 aaPredicted RBP14.21□□□□□ -0.13
VRK3-212ENST00000596814 SFRP1Q8N474 314 aa14.21□□□□□ -0.13
VRK3-212ENST00000596814 SNX31Q8N9S9 440 aa14.21□□□□□ -0.13
VRK3-212ENST00000596814 MAPK15Q8TD08 544 aa14.21□□□□□ -0.13
VRK3-212ENST00000596814 ZNF382Q96SR6 550 aa14.21□□□□□ -0.13
VRK3-212ENST00000596814 NOL11Q9H8H0 719 aaKnown RBP14.21□□□□□ -0.13
VRK3-212ENST00000596814 CAPN10Q9HC96 672 aa14.21□□□□□ -0.13
VRK3-212ENST00000596814 CCDC177Q9NQR7 707 aaPredicted RBP14.21□□□□□ -0.13
VRK3-212ENST00000596814 FSCN3Q9NQT6 498 aa14.21□□□□□ -0.13
VRK3-212ENST00000596814 DNAJC11Q9NVH1 559 aa14.21□□□□□ -0.13
VRK3-212ENST00000596814 UCKL1Q9NWZ5 548 aa14.21□□□□□ -0.13
VRK3-212ENST00000596814 CPNE7Q9UBL6 633 aa14.21□□□□□ -0.13
VRK3-212ENST00000596814 MARCOQ9UEW3 520 aaPredicted RBP14.21□□□□□ -0.13
VRK3-212ENST00000596814 HAO1Q9UJM8 370 aa14.21□□□□□ -0.13
VRK3-212ENST00000596814 SLC22A14Q9Y267 594 aa14.21□□□□□ -0.13
VRK3-212ENST00000596814 STK38LQ9Y2H1 464 aa14.21□□□□□ -0.13
VRK3-212ENST00000596814 PCDH15Q96QU1 1955 aa14.21□□□□□ -0.13
VRK3-212ENST00000596814 ADAMTS9Q9P2N4 1935 aa14.21□□□□□ -0.14
VRK3-212ENST00000596814 E7ENX8 843 aa14.21□□□□□ -0.14
VRK3-212ENST00000596814 UBFD1O14562 309 aaKnown RBP14.21□□□□□ -0.14
VRK3-212ENST00000596814 GIPC1O14908 333 aa14.21□□□□□ -0.14
VRK3-212ENST00000596814 KATNA1O75449 491 aa14.21□□□□□ -0.14
VRK3-212ENST00000596814 FAM107AO95990 144 aa14.21□□□□□ -0.14
VRK3-212ENST00000596814 UBE2IP63279 158 aaKnown RBP14.21□□□□□ -0.14
VRK3-212ENST00000596814 TAP2Q03519 686 aa14.21□□□□□ -0.14
VRK3-212ENST00000596814 TSTA3Q13630 321 aaPredicted RBP14.21□□□□□ -0.14
VRK3-212ENST00000596814 FASTKQ14296 549 aaKnown RBP14.21□□□□□ -0.14
VRK3-212ENST00000596814 DEFB133Q30KQ1 61 aa14.21□□□□□ -0.14
VRK3-212ENST00000596814 TRIM61Q5EBN2 209 aa14.21□□□□□ -0.14
VRK3-212ENST00000596814 SH2D4BQ5SQS7 431 aa14.21□□□□□ -0.14
VRK3-212ENST00000596814 SLC23A3Q6PIS1 610 aa14.21□□□□□ -0.14
VRK3-212ENST00000596814 IL27RAQ6UWB1 636 aa14.21□□□□□ -0.14
VRK3-212ENST00000596814 SLC9B2Q86UD5 537 aa14.21□□□□□ -0.14
VRK3-212ENST00000596814 THOC6Q86W42 341 aaKnown RBP14.21□□□□□ -0.14
VRK3-212ENST00000596814 SFTPA2Q8IWL1 248 aa14.21□□□□□ -0.14
VRK3-212ENST00000596814 PIWIL2Q8TC59 973 aaKnown RBP14.21□□□□□ -0.14
VRK3-212ENST00000596814 AGR3Q8TD06 166 aa14.21□□□□□ -0.14
VRK3-212ENST00000596814 AGAP11Q8TF27 550 aa14.21□□□□□ -0.14
VRK3-212ENST00000596814 GRAMD1AQ96CP6 724 aa14.21□□□□□ -0.14
VRK3-212ENST00000596814 CCT8L2Q96SF2 557 aa14.21□□□□□ -0.14
VRK3-212ENST00000596814 IPPKQ9H8X2 491 aa14.21□□□□□ -0.14
VRK3-212ENST00000596814 MID1IP1Q9NPA3 183 aa14.21□□□□□ -0.14
VRK3-212ENST00000596814 SLC6A14Q9UN76 642 aa14.21□□□□□ -0.14
VRK3-212ENST00000596814 ICKQ9UPZ9 632 aa14.21□□□□□ -0.14
VRK3-212ENST00000596814 EPB41L3Q9Y2J2 1087 aaPredicted RBP14.21□□□□□ -0.14
VRK3-212ENST00000596814 PCDHGA5Q9Y5G8 931 aa14.21□□□□□ -0.14
VRK3-212ENST00000596814 CSNK1G3Q9Y6M4 447 aa14.21□□□□□ -0.14
VRK3-212ENST00000596814 A0A1B0GTQ1 180 aa14.2□□□□□ -0.14
VRK3-212ENST00000596814 PATE3B3GLJ2 98 aa14.2□□□□□ -0.14
VRK3-212ENST00000596814 PPP6CO00743 305 aa14.2□□□□□ -0.14
VRK3-212ENST00000596814 OTCP00480 354 aa14.2□□□□□ -0.14
VRK3-212ENST00000596814 TROVE2P10155 538 aaKnown RBP eCLIP14.2□□□□□ -0.14
VRK3-212ENST00000596814 KITP10721 976 aa14.2□□□□□ -0.14
VRK3-212ENST00000596814 CCND1P24385 295 aa14.2□□□□□ -0.14
VRK3-212ENST00000596814 EPHA8P29322 1005 aaPredicted RBP14.2□□□□□ -0.14
VRK3-212ENST00000596814 MPLP40238 635 aa14.2□□□□□ -0.14
Retrieved 100 of 20,778 RNA–protein pairs in 39.3 ms