RNA–Protein interactions for RNA: ENST00000594243.1

UPF1-202, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 683 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-202ENST00000594243 CIDEBQ9UHD4 219 aa14.53□□□□□ -0.08
UPF1-202ENST00000594243 RARRES3Q9UL19 164 aa14.53□□□□□ -0.08
UPF1-202ENST00000594243 BTRCQ9Y297 605 aa14.53□□□□□ -0.08
UPF1-202ENST00000594243 PSAT1Q9Y617 370 aa14.53□□□□□ -0.08
UPF1-202ENST00000594243 FAM208BQ5VWN6 2430 aa14.53□□□□□ -0.08
UPF1-202ENST00000594243 DSPP15924 2871 aaKnown RBP14.52□□□□□ -0.08
UPF1-202ENST00000594243 KNTC1P50748 2209 aa14.52□□□□□ -0.08
UPF1-202ENST00000594243 A0A0J9YY10 115 aa14.52□□□□□ -0.09
UPF1-202ENST00000594243 FAM159BA6NKW6 160 aa14.52□□□□□ -0.09
UPF1-202ENST00000594243 ZNF839A8K0R7 811 aa14.52□□□□□ -0.09
UPF1-202ENST00000594243 FOLR1P15328 257 aa14.52□□□□□ -0.09
UPF1-202ENST00000594243 ST6GAL1P15907 406 aa14.52□□□□□ -0.09
UPF1-202ENST00000594243 FDXRP22570 491 aa14.52□□□□□ -0.09
UPF1-202ENST00000594243 PHBP35232 272 aa14.52□□□□□ -0.09
UPF1-202ENST00000594243 IL2P60568 153 aa14.52□□□□□ -0.09
UPF1-202ENST00000594243 TUBB4BP68371 445 aa14.52□□□□□ -0.09
UPF1-202ENST00000594243 TUBB3Q13509 450 aa14.52□□□□□ -0.09
UPF1-202ENST00000594243 ARHGAP19Q14CB8 494 aa14.52□□□□□ -0.09
UPF1-202ENST00000594243 SF1Q15637 639 aaKnown RBP14.52□□□□□ -0.09
UPF1-202ENST00000594243 CCSMST1Q4G0I0 132 aa14.52□□□□□ -0.09
UPF1-202ENST00000594243 LARP7Q4G0J3 582 aaKnown RBP eCLIP14.52□□□□□ -0.09
UPF1-202ENST00000594243 FBXO38Q6PIJ6 1188 aa14.52□□□□□ -0.09
UPF1-202ENST00000594243 UBE2R2Q712K3 238 aaPredicted RBP14.52□□□□□ -0.09
UPF1-202ENST00000594243 ZFAND4Q86XD8 727 aa14.52□□□□□ -0.09
UPF1-202ENST00000594243 RELL1Q8IUW5 271 aa14.52□□□□□ -0.09
UPF1-202ENST00000594243 RASGRP3Q8IV61 690 aa14.52□□□□□ -0.09
UPF1-202ENST00000594243 SPACA3Q8IXA5 215 aa14.52□□□□□ -0.09
UPF1-202ENST00000594243 IFT20Q8IY31 132 aa14.52□□□□□ -0.09
UPF1-202ENST00000594243 LINC01555Q8NAE3 123 aa14.52□□□□□ -0.09
UPF1-202ENST00000594243 OR8K5Q8NH50 307 aa14.52□□□□□ -0.09
UPF1-202ENST00000594243 HNRNPLLQ8WVV9 542 aaKnown RBP14.52□□□□□ -0.09
UPF1-202ENST00000594243 PMEPA1Q969W9 287 aa14.52□□□□□ -0.09
UPF1-202ENST00000594243 TCTN2Q96GX1 697 aa14.52□□□□□ -0.09
UPF1-202ENST00000594243 VPS39Q96JC1 886 aa14.52□□□□□ -0.09
UPF1-202ENST00000594243 ELMO2Q96JJ3 720 aa14.52□□□□□ -0.09
UPF1-202ENST00000594243 PPM1MQ96MI6 270 aa14.52□□□□□ -0.09
UPF1-202ENST00000594243 IL17FQ96PD4 163 aa14.52□□□□□ -0.09
UPF1-202ENST00000594243 FCRL4Q96PJ5 515 aa14.52□□□□□ -0.09
UPF1-202ENST00000594243 RHOJQ9H4E5 214 aa14.52□□□□□ -0.09
UPF1-202ENST00000594243 FANCEQ9HB96 536 aa14.52□□□□□ -0.09
UPF1-202ENST00000594243 SMYD2Q9NRG4 433 aa14.52□□□□□ -0.09
UPF1-202ENST00000594243 FGF21Q9NSA1 209 aa14.52□□□□□ -0.09
UPF1-202ENST00000594243 CAMSAP3Q9P1Y5 1249 aaPredicted RBP14.52□□□□□ -0.09
UPF1-202ENST00000594243 ANKRD11Q6UB99 2663 aaPredicted RBP14.51□□□□□ -0.09
UPF1-202ENST00000594243 FAM95CA0A1B0GW59 222 aa14.51□□□□□ -0.09
UPF1-202ENST00000594243 ARHGEF33A8MVX0 844 aa14.51□□□□□ -0.09
UPF1-202ENST00000594243 CXorf49A8MYA2 514 aaPredicted RBP14.51□□□□□ -0.09
UPF1-202ENST00000594243 MYO1CO00159 1063 aa14.51□□□□□ -0.09
UPF1-202ENST00000594243 SLC16A5O15375 505 aa14.51□□□□□ -0.09
UPF1-202ENST00000594243 FKBP9O95302 570 aa14.51□□□□□ -0.09
UPF1-202ENST00000594243 C8GP07360 202 aa14.51□□□□□ -0.09
UPF1-202ENST00000594243 MSL3P1P0C860 447 aa14.51□□□□□ -0.09
UPF1-202ENST00000594243 EBLN1P0CF75 366 aa14.51□□□□□ -0.09
UPF1-202ENST00000594243 SAT1P21673 171 aa14.51□□□□□ -0.09
UPF1-202ENST00000594243 ATP1A2P50993 1020 aa14.51□□□□□ -0.09
UPF1-202ENST00000594243 SLC12A2P55011 1212 aa14.51□□□□□ -0.09
UPF1-202ENST00000594243 UCNP55089 124 aa14.51□□□□□ -0.09
UPF1-202ENST00000594243 CLN3Q13286 438 aa14.51□□□□□ -0.09
UPF1-202ENST00000594243 KCNAB1Q14722 419 aa14.51□□□□□ -0.09
UPF1-202ENST00000594243 CYP2A13Q16696 494 aa14.51□□□□□ -0.09
UPF1-202ENST00000594243 KBTBD12Q3ZCT8 623 aa14.51□□□□□ -0.09
UPF1-202ENST00000594243 GRTP1Q5TC63 336 aa14.51□□□□□ -0.09
UPF1-202ENST00000594243 PIWIL4Q7Z3Z4 852 aaKnown RBP14.51□□□□□ -0.09
UPF1-202ENST00000594243 DTX1Q86Y01 620 aa14.51□□□□□ -0.09
UPF1-202ENST00000594243 CTAGE3PQ8IX95 158 aa14.51□□□□□ -0.09
UPF1-202ENST00000594243 C2orf73Q8N5S3 287 aaPredicted RBP14.51□□□□□ -0.09
UPF1-202ENST00000594243 FLVCR1-AS1Q8TAF5 88 aa14.51□□□□□ -0.09
UPF1-202ENST00000594243 MCOLN3Q8TDD5 553 aa14.51□□□□□ -0.09
UPF1-202ENST00000594243 FBF1Q8TES7 1133 aa14.51□□□□□ -0.09
UPF1-202ENST00000594243 FMO2Q99518 471 aa14.51□□□□□ -0.09
UPF1-202ENST00000594243 OLFM1Q99784 485 aa14.51□□□□□ -0.09
UPF1-202ENST00000594243 SPRY4Q9C004 299 aa14.51□□□□□ -0.09
UPF1-202ENST00000594243 INTS7Q9NVH2 962 aaKnown RBP14.51□□□□□ -0.09
UPF1-202ENST00000594243 PILRAQ9UKJ1 303 aa14.51□□□□□ -0.09
UPF1-202ENST00000594243 TMEM184BQ9Y519 407 aaPredicted RBP14.51□□□□□ -0.09
UPF1-202ENST00000594243 FREM2Q5SZK8 3169 aa14.5□□□□□ -0.09
UPF1-202ENST00000594243 STK17BO94768 372 aa14.5□□□□□ -0.09
UPF1-202ENST00000594243 SYF2O95926 243 aaKnown RBP14.5□□□□□ -0.09
UPF1-202ENST00000594243 HIST1H2AGP0C0S8 130 aaPredicted RBP14.5□□□□□ -0.09
UPF1-202ENST00000594243 PVRP15151 417 aa14.5□□□□□ -0.09
UPF1-202ENST00000594243 HIST1H2ADP20671 130 aa14.5□□□□□ -0.09
UPF1-202ENST00000594243 CYP2A7P20853 494 aa14.5□□□□□ -0.09
UPF1-202ENST00000594243 ITPKBP27987 946 aa14.5□□□□□ -0.09
UPF1-202ENST00000594243 OAS2P29728 719 aaKnown RBP14.5□□□□□ -0.09
UPF1-202ENST00000594243 PEBP1P30086 187 aaKnown RBP14.5□□□□□ -0.09
UPF1-202ENST00000594243 SPRP35270 261 aaPredicted RBP14.5□□□□□ -0.09
UPF1-202ENST00000594243 GP5P40197 560 aa14.5□□□□□ -0.09
UPF1-202ENST00000594243 POU4F1Q01851 419 aa14.5□□□□□ -0.09
UPF1-202ENST00000594243 TLE3Q04726 772 aa14.5□□□□□ -0.09
UPF1-202ENST00000594243 SP140Q13342 867 aa14.5□□□□□ -0.09
UPF1-202ENST00000594243 NAB1Q13506 487 aa14.5□□□□□ -0.09
UPF1-202ENST00000594243 EEF1AKMT2Q5JPI9 291 aaKnown RBP14.5□□□□□ -0.09
UPF1-202ENST00000594243 NLGN4XQ8N0W4 816 aa14.5□□□□□ -0.09
UPF1-202ENST00000594243 NKAPQ8N5F7 415 aaKnown RBP14.5□□□□□ -0.09
UPF1-202ENST00000594243 NLGN4YQ8NFZ3 816 aaPredicted RBP14.5□□□□□ -0.09
UPF1-202ENST00000594243 DENND1AQ8TEH3 1009 aa14.5□□□□□ -0.09
UPF1-202ENST00000594243 N4BP2L2Q92802 583 aaPredicted RBP14.5□□□□□ -0.09
UPF1-202ENST00000594243 ZNF501Q96CX3 271 aaPredicted RBP14.5□□□□□ -0.09
UPF1-202ENST00000594243 LINGO1Q96FE5 620 aa14.5□□□□□ -0.09
UPF1-202ENST00000594243 PDLIM5Q96HC4 596 aaKnown RBP14.5□□□□□ -0.09
Retrieved 100 of 20,778 RNA–protein pairs in 22.3 ms