RNA–Protein interactions for RNA: ENST00000574029.5

VPS53-216, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 4 BASIC

Gene VPS53, Length 585 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-216ENST00000574029 ANKUB1A6NFN9 424 aa20.25■□□□□ 0.83
VPS53-216ENST00000574029 IPO7O95373 1038 aaKnown RBP20.25■□□□□ 0.83
VPS53-216ENST00000574029 PTMAP06454 111 aaKnown RBP20.25■□□□□ 0.83
VPS53-216ENST00000574029 ITGAXP20702 1163 aa20.25■□□□□ 0.83
VPS53-216ENST00000574029 MAGP20916 626 aa20.25■□□□□ 0.83
VPS53-216ENST00000574029 AIMP2Q13155 320 aaKnown RBP20.25■□□□□ 0.83
VPS53-216ENST00000574029 CUZD1Q86UP6 607 aa20.25■□□□□ 0.83
VPS53-216ENST00000574029 MCATQ8IVS2 390 aaKnown RBP20.25■□□□□ 0.83
VPS53-216ENST00000574029 FAM20CQ8IXL6 584 aa20.25■□□□□ 0.83
VPS53-216ENST00000574029 TAB3Q8N5C8 712 aaPredicted RBP20.25■□□□□ 0.83
VPS53-216ENST00000574029 LINC01555Q8NAE3 123 aa20.25■□□□□ 0.83
VPS53-216ENST00000574029 OR52K1Q8NGK4 314 aa20.25■□□□□ 0.83
VPS53-216ENST00000574029 HDAC10Q969S8 669 aa20.25■□□□□ 0.83
VPS53-216ENST00000574029 FKBP10Q96AY3 582 aa20.25■□□□□ 0.83
VPS53-216ENST00000574029 AMFRQ9UKV5 643 aa20.25■□□□□ 0.83
VPS53-216ENST00000574029 SLC5A6Q9Y289 635 aa20.25■□□□□ 0.83
VPS53-216ENST00000574029 COPG1Q9Y678 874 aaKnown RBP20.25■□□□□ 0.83
VPS53-216ENST00000574029 F8W8V4 182 aa20.24■□□□□ 0.83
VPS53-216ENST00000574029 ALAS2P22557 587 aa20.24■□□□□ 0.83
VPS53-216ENST00000574029 MMP11P24347 488 aa20.24■□□□□ 0.83
VPS53-216ENST00000574029 CDC25BP30305 580 aa20.24■□□□□ 0.83
VPS53-216ENST00000574029 CCR7P32248 378 aa20.24■□□□□ 0.83
VPS53-216ENST00000574029 ARSFP54793 590 aa20.24■□□□□ 0.83
VPS53-216ENST00000574029 CDH17Q12864 832 aa20.24■□□□□ 0.83
VPS53-216ENST00000574029 AFTPHQ6ULP2 937 aa20.24■□□□□ 0.83
VPS53-216ENST00000574029 VRK3Q8IV63 474 aa20.24■□□□□ 0.83
VPS53-216ENST00000574029 UBL4BQ8N7F7 174 aa20.24■□□□□ 0.83
VPS53-216ENST00000574029 DENND1AQ8TEH3 1009 aa20.24■□□□□ 0.83
VPS53-216ENST00000574029 TTC1Q99614 292 aa20.24■□□□□ 0.83
VPS53-216ENST00000574029 WDR54Q9H977 334 aa20.24■□□□□ 0.83
VPS53-216ENST00000574029 RIMKLBQ9ULI2 386 aa20.24■□□□□ 0.83
VPS53-216ENST00000574029 NTNG1Q9Y2I2 539 aa20.24■□□□□ 0.83
VPS53-216ENST00000574029 KLHL20Q9Y2M5 609 aa20.24■□□□□ 0.83
VPS53-216ENST00000574029 A0A1B0GX78 115 aa20.23■□□□□ 0.83
VPS53-216ENST00000574029 HEATR9A2RTY3 570 aa20.23■□□□□ 0.83
VPS53-216ENST00000574029 ERI2A8K979 691 aaKnown RBP20.23■□□□□ 0.83
VPS53-216ENST00000574029 GOT2P00505 430 aaKnown RBP20.23■□□□□ 0.83
VPS53-216ENST00000574029 ALBP02768 609 aa20.23■□□□□ 0.83
VPS53-216ENST00000574029 CD9P21926 228 aa20.23■□□□□ 0.83
VPS53-216ENST00000574029 COL8A1P27658 744 aa20.23■□□□□ 0.83
VPS53-216ENST00000574029 CSE1LP55060 971 aaKnown RBP20.23■□□□□ 0.83
VPS53-216ENST00000574029 ACVR1Q04771 509 aa20.23■□□□□ 0.83
VPS53-216ENST00000574029 GRB7Q14451 532 aa20.23■□□□□ 0.83
VPS53-216ENST00000574029 ZNF787Q6DD87 383 aa20.23■□□□□ 0.83
VPS53-216ENST00000574029 RAD9BQ6WBX8 426 aa20.23■□□□□ 0.83
VPS53-216ENST00000574029 TTLL10Q6ZVT0 673 aa20.23■□□□□ 0.83
VPS53-216ENST00000574029 OVCH1Q7RTY7 1134 aa20.23■□□□□ 0.83
VPS53-216ENST00000574029 PEX26Q7Z412 305 aa20.23■□□□□ 0.83
VPS53-216ENST00000574029 DNAAF3Q8N9W5 541 aa20.23■□□□□ 0.83
VPS53-216ENST00000574029 SLC22A18Q96BI1 424 aa20.23■□□□□ 0.83
VPS53-216ENST00000574029 C5orf34Q96MH7 638 aa20.23■□□□□ 0.83
VPS53-216ENST00000574029 CARD6Q9BX69 1037 aa20.23■□□□□ 0.83
VPS53-216ENST00000574029 SLC26A1Q9H2B4 701 aa20.23■□□□□ 0.83
VPS53-216ENST00000574029 SLC6A20Q9NP91 592 aa20.23■□□□□ 0.83
VPS53-216ENST00000574029 ENAMQ9NRM1 1142 aa20.23■□□□□ 0.83
VPS53-216ENST00000574029 SLC2A6Q9UGQ3 507 aa20.23■□□□□ 0.83
VPS53-216ENST00000574029 PACSIN2Q9UNF0 486 aaPredicted RBP20.23■□□□□ 0.83
VPS53-216ENST00000574029 TCRBV7S2A1N4TA0A589 114 aa20.22■□□□□ 0.83
VPS53-216ENST00000574029 MIF4GDA9UHW6 222 aaKnown RBP20.22■□□□□ 0.83
VPS53-216ENST00000574029 SOCS6O14544 535 aa20.22■□□□□ 0.83
VPS53-216ENST00000574029 GPC4O75487 556 aa20.22■□□□□ 0.83
VPS53-216ENST00000574029 SUN1O94901 812 aa20.22■□□□□ 0.83
VPS53-216ENST00000574029 RPN2P04844 631 aa20.22■□□□□ 0.83
VPS53-216ENST00000574029 PIM1P11309 404 aaPredicted RBP20.22■□□□□ 0.83
VPS53-216ENST00000574029 ITGA3P26006 1051 aa20.22■□□□□ 0.83
VPS53-216ENST00000574029 DCTP40126 519 aa20.22■□□□□ 0.83
VPS53-216ENST00000574029 GLRBP48167 497 aa20.22■□□□□ 0.83
VPS53-216ENST00000574029 HSPA14Q0VDF9 509 aa20.22■□□□□ 0.83
VPS53-216ENST00000574029 ELOAQ14241 798 aaKnown RBP20.22■□□□□ 0.83
VPS53-216ENST00000574029 SEMA3AQ14563 771 aa20.22■□□□□ 0.83
VPS53-216ENST00000574029 TSTD2Q5T7W7 516 aa20.22■□□□□ 0.83
VPS53-216ENST00000574029 YOD1Q5VVQ6 348 aaPredicted RBP20.22■□□□□ 0.83
VPS53-216ENST00000574029 PRAMEF13Q5VWM6 474 aa20.22■□□□□ 0.83
VPS53-216ENST00000574029 FCRL6Q6DN72 434 aa20.22■□□□□ 0.83
VPS53-216ENST00000574029 IGFL2Q6UWQ7 119 aa20.22■□□□□ 0.83
VPS53-216ENST00000574029 ZNF534Q76KX8 674 aa20.22■□□□□ 0.83
VPS53-216ENST00000574029 DCUN1D3Q8IWE4 304 aa20.22■□□□□ 0.83
VPS53-216ENST00000574029 ACRBPQ8NEB7 543 aa20.22■□□□□ 0.83
VPS53-216ENST00000574029 OR4L1Q8NH43 312 aa20.22■□□□□ 0.83
VPS53-216ENST00000574029 UBE2Q2Q8WVN8 375 aa20.22■□□□□ 0.83
VPS53-216ENST00000574029 ASZ1Q8WWH4 475 aa20.22■□□□□ 0.83
VPS53-216ENST00000574029 SPSB2Q99619 263 aa20.22■□□□□ 0.83
VPS53-216ENST00000574029 WDR77Q9BQA1 342 aaPredicted RBP20.22■□□□□ 0.83
VPS53-216ENST00000574029 TSSK1BQ9BXA7 367 aa20.22■□□□□ 0.83
VPS53-216ENST00000574029 FBXL4Q9UKA2 621 aa20.22■□□□□ 0.83
VPS53-216ENST00000574029 DSCR3O14972 297 aa20.21■□□□□ 0.83
VPS53-216ENST00000574029 S1PR4O95977 384 aa20.21■□□□□ 0.83
VPS53-216ENST00000574029 GAS8O95995 478 aa20.21■□□□□ 0.83
VPS53-216ENST00000574029 ADRA1DP25100 572 aa20.21■□□□□ 0.83
VPS53-216ENST00000574029 NKG7Q16617 165 aa20.21■□□□□ 0.83
VPS53-216ENST00000574029 ZC3H12BQ5HYM0 836 aaKnown RBP20.21■□□□□ 0.83
VPS53-216ENST00000574029 UNC5DQ6UXZ4 953 aa20.21■□□□□ 0.83
VPS53-216ENST00000574029 COX15Q7KZN9 410 aa20.21■□□□□ 0.83
VPS53-216ENST00000574029 C2orf73Q8N5S3 287 aaPredicted RBP20.21■□□□□ 0.83
VPS53-216ENST00000574029 LMNTD1Q8N9Z9 388 aa20.21■□□□□ 0.83
VPS53-216ENST00000574029 OR2L8Q8NGY9 312 aa20.21■□□□□ 0.83
VPS53-216ENST00000574029 LKAAEAR1Q8TD35 194 aa20.21■□□□□ 0.83
VPS53-216ENST00000574029 PPP4R1Q8TF05 950 aa20.21■□□□□ 0.83
VPS53-216ENST00000574029 ZNF778Q96MU6 729 aa20.21■□□□□ 0.83
VPS53-216ENST00000574029 ZNF285Q96NJ3 590 aa20.21■□□□□ 0.83
Retrieved 100 of 20,778 RNA–protein pairs in 56 ms