RNA–Protein interactions for RNA: ENST00000572334.6

VPS53-213, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 5

Gene VPS53, Length 561 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-213ENST00000572334 PKLRP30613 574 aa6.47□□□□□ -1.37
VPS53-213ENST00000572334 OTX2P32243 289 aa6.47□□□□□ -1.37
VPS53-213ENST00000572334 CCR7P32248 378 aa6.47□□□□□ -1.37
VPS53-213ENST00000572334 CYLC1P35663 651 aaPredicted RBP6.47□□□□□ -1.37
VPS53-213ENST00000572334 NSG1P42857 185 aa6.47□□□□□ -1.37
VPS53-213ENST00000572334 ZNF75DP51815 510 aa6.47□□□□□ -1.37
VPS53-213ENST00000572334 SOX8P57073 446 aa6.47□□□□□ -1.37
VPS53-213ENST00000572334 GSTM4Q03013 218 aa6.47□□□□□ -1.37
VPS53-213ENST00000572334 ACVR1Q04771 509 aa6.47□□□□□ -1.37
VPS53-213ENST00000572334 SSPNQ14714 243 aa6.47□□□□□ -1.37
VPS53-213ENST00000572334 SLC9A5Q14940 896 aa6.47□□□□□ -1.37
VPS53-213ENST00000572334 BRD3Q15059 726 aa6.47□□□□□ -1.37
VPS53-213ENST00000572334 SPA17Q15506 151 aa6.47□□□□□ -1.37
VPS53-213ENST00000572334 OASLQ15646 514 aaKnown RBP6.47□□□□□ -1.37
VPS53-213ENST00000572334 C4orf17Q53FE4 359 aa6.47□□□□□ -1.37
VPS53-213ENST00000572334 DCAF10Q5QP82 559 aa6.47□□□□□ -1.37
VPS53-213ENST00000572334 CCDC181Q5TID7 509 aa6.47□□□□□ -1.37
VPS53-213ENST00000572334 C1orf189Q5VU69 101 aa6.47□□□□□ -1.37
VPS53-213ENST00000572334 IGFL3Q6UXB1 125 aa6.47□□□□□ -1.37
VPS53-213ENST00000572334 COX15Q7KZN9 410 aa6.47□□□□□ -1.37
VPS53-213ENST00000572334 TAS2R42Q7RTR8 314 aa6.47□□□□□ -1.37
VPS53-213ENST00000572334 PRUNE1Q86TP1 453 aa6.47□□□□□ -1.37
VPS53-213ENST00000572334 C10orf67Q8IYJ2 551 aa6.47□□□□□ -1.37
VPS53-213ENST00000572334 TBC1D21Q8IYX1 336 aa6.47□□□□□ -1.37
VPS53-213ENST00000572334 DTWD1Q8N5C7 304 aa6.47□□□□□ -1.37
VPS53-213ENST00000572334 TAB3Q8N5C8 712 aaPredicted RBP6.47□□□□□ -1.37
VPS53-213ENST00000572334 ZNF655Q8N720 491 aaPredicted RBP6.47□□□□□ -1.37
VPS53-213ENST00000572334 EFCAB3Q8N7B9 438 aa6.47□□□□□ -1.37
VPS53-213ENST00000572334 OR52K1Q8NGK4 314 aa6.47□□□□□ -1.37
VPS53-213ENST00000572334 OR2Y1Q8NGV0 311 aa6.47□□□□□ -1.37
VPS53-213ENST00000572334 GIMAP7Q8NHV1 300 aa6.47□□□□□ -1.37
VPS53-213ENST00000572334 SSC4DQ8WTU2 575 aa6.47□□□□□ -1.37
VPS53-213ENST00000572334 ELMO1Q92556 727 aa6.47□□□□□ -1.37
VPS53-213ENST00000572334 SNRNP40Q96DI7 357 aaKnown RBP6.47□□□□□ -1.37
VPS53-213ENST00000572334 ZNF285Q96NJ3 590 aa6.47□□□□□ -1.37
VPS53-213ENST00000572334 DPH2Q9BQC3 489 aaPredicted RBP6.47□□□□□ -1.37
VPS53-213ENST00000572334 MESP1Q9BRJ9 268 aa6.47□□□□□ -1.37
VPS53-213ENST00000572334 TMEM121Q9BTD3 319 aa6.47□□□□□ -1.37
VPS53-213ENST00000572334 DHRS4Q9BTZ2 278 aa6.47□□□□□ -1.37
VPS53-213ENST00000572334 AP1M1Q9BXS5 423 aa6.47□□□□□ -1.37
VPS53-213ENST00000572334 LRRC40Q9H9A6 602 aa6.47□□□□□ -1.37
VPS53-213ENST00000572334 L2HGDHQ9H9P8 463 aa6.47□□□□□ -1.37
VPS53-213ENST00000572334 LRRC4CQ9HCJ2 640 aa6.47□□□□□ -1.37
VPS53-213ENST00000572334 ENAMQ9NRM1 1142 aa6.47□□□□□ -1.37
VPS53-213ENST00000572334 ASF1BQ9NVP2 202 aa6.47□□□□□ -1.37
VPS53-213ENST00000572334 C5AR2Q9P296 337 aa6.47□□□□□ -1.37
VPS53-213ENST00000572334 ERRFI1Q9UJM3 462 aaPredicted RBP6.47□□□□□ -1.37
VPS53-213ENST00000572334 KLHL20Q9Y2M5 609 aa6.47□□□□□ -1.37
VPS53-213ENST00000572334 PTRH2Q9Y3E5 179 aaKnown RBP6.47□□□□□ -1.37
VPS53-213ENST00000572334 CSAG2Q9Y5P2 127 aa6.47□□□□□ -1.37
VPS53-213ENST00000572334 GTF3C1Q12789 2109 aa6.47□□□□□ -1.37
VPS53-213ENST00000572334 PKDREJQ9NTG1 2253 aa6.47□□□□□ -1.37
VPS53-213ENST00000572334 CSMD2Q7Z408 3487 aa6.46□□□□□ -1.38
VPS53-213ENST00000572334 KRT87PA6NCN2 255 aa6.46□□□□□ -1.38
VPS53-213ENST00000572334 IQCF5A8MTL0 148 aa6.46□□□□□ -1.38
VPS53-213ENST00000572334 SOCS6O14544 535 aa6.46□□□□□ -1.38
VPS53-213ENST00000572334 ZSCAN9O15535 394 aaPredicted RBP6.46□□□□□ -1.38
VPS53-213ENST00000572334 STK10O94804 968 aaKnown RBP6.46□□□□□ -1.38
VPS53-213ENST00000572334 SUN1O94901 812 aa6.46□□□□□ -1.38
VPS53-213ENST00000572334 FTCDO95954 541 aa6.46□□□□□ -1.38
VPS53-213ENST00000572334 LDLRP01130 860 aa6.46□□□□□ -1.38
VPS53-213ENST00000572334 HBQ1P09105 142 aa6.46□□□□□ -1.38
VPS53-213ENST00000572334 ETS1P14921 441 aa6.46□□□□□ -1.38
VPS53-213ENST00000572334 MAGP20916 626 aa6.46□□□□□ -1.38
VPS53-213ENST00000572334 COL8A1P27658 744 aa6.46□□□□□ -1.38
VPS53-213ENST00000572334 SHMT2P34897 504 aa6.46□□□□□ -1.38
VPS53-213ENST00000572334 DCDP81605 110 aaKnown RBP6.46□□□□□ -1.38
VPS53-213ENST00000572334 MYBPC3Q14896 1274 aa6.46□□□□□ -1.38
VPS53-213ENST00000572334 KYNUQ16719 465 aa6.46□□□□□ -1.38
VPS53-213ENST00000572334 SLC5A12Q1EHB4 618 aa6.46□□□□□ -1.38
VPS53-213ENST00000572334 TSTD2Q5T7W7 516 aa6.46□□□□□ -1.38
VPS53-213ENST00000572334 VWA5B1Q5TIE3 1220 aa6.46□□□□□ -1.38
VPS53-213ENST00000572334 MLIPQ5VWP3 458 aa6.46□□□□□ -1.38
VPS53-213ENST00000572334 FCRL6Q6DN72 434 aa6.46□□□□□ -1.38
VPS53-213ENST00000572334 SYT10Q6XYQ8 523 aa6.46□□□□□ -1.38
VPS53-213ENST00000572334 Q6ZS92 163 aa6.46□□□□□ -1.38
VPS53-213ENST00000572334 ARHGEF18Q6ZSZ5 1173 aa6.46□□□□□ -1.38
VPS53-213ENST00000572334 CUZD1Q86UP6 607 aa6.46□□□□□ -1.38
VPS53-213ENST00000572334 RAB43Q86YS6 212 aa6.46□□□□□ -1.38
VPS53-213ENST00000572334 HPS6Q86YV9 775 aa6.46□□□□□ -1.38
VPS53-213ENST00000572334 TMTC1Q8IUR5 882 aa6.46□□□□□ -1.38
VPS53-213ENST00000572334 SLC22A15Q8IZD6 547 aa6.46□□□□□ -1.38
VPS53-213ENST00000572334 GALNT16Q8N428 558 aa6.46□□□□□ -1.38
VPS53-213ENST00000572334 PROKR1Q8TCW9 393 aa6.46□□□□□ -1.38
VPS53-213ENST00000572334 ZDHHC19Q8WVZ1 309 aaPredicted RBP6.46□□□□□ -1.38
VPS53-213ENST00000572334 ATG4AQ8WYN0 398 aa6.46□□□□□ -1.38
VPS53-213ENST00000572334 HDAC10Q969S8 669 aa6.46□□□□□ -1.38
VPS53-213ENST00000572334 TBRG4Q969Z0 631 aaKnown RBP eCLIP6.46□□□□□ -1.38
VPS53-213ENST00000572334 SGSM3Q96HU1 749 aa6.46□□□□□ -1.38
VPS53-213ENST00000572334 HES6Q96HZ4 224 aa6.46□□□□□ -1.38
VPS53-213ENST00000572334 CALR3Q96L12 384 aaKnown RBP6.46□□□□□ -1.38
VPS53-213ENST00000572334 IL17FQ96PD4 163 aa6.46□□□□□ -1.38
VPS53-213ENST00000572334 PPP1R2P1Q96PQ5 205 aa6.46□□□□□ -1.38
VPS53-213ENST00000572334 SPSB2Q99619 263 aa6.46□□□□□ -1.38
VPS53-213ENST00000572334 TEP1Q99973 2627 aaKnown RBP6.46□□□□□ -1.38
VPS53-213ENST00000572334 CXorf56Q9H5V9 222 aa6.46□□□□□ -1.38
VPS53-213ENST00000572334 SYNPO2LQ9H987 977 aa6.46□□□□□ -1.38
VPS53-213ENST00000572334 VPS37BQ9H9H4 285 aa6.46□□□□□ -1.38
VPS53-213ENST00000572334 ETNK1Q9HBU6 452 aa6.46□□□□□ -1.38
VPS53-213ENST00000572334 CUEDC1Q9NWM3 386 aaPredicted RBP6.46□□□□□ -1.38
Retrieved 100 of 20,778 RNA–protein pairs in 48.3 ms