RNA–Protein interactions for RNA: ENST00000569950.1

VPS35-211, Transcript of VPS35, retromer complex component, humanhuman

TSL 5

Gene VPS35, Length 1,096 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-211ENST00000569950 EPORP19235 508 aa8.99□□□□□ -0.97
VPS35-211ENST00000569950 PSMB5P28074 263 aa8.99□□□□□ -0.97
VPS35-211ENST00000569950 NDUFS1P28331 727 aa8.99□□□□□ -0.97
VPS35-211ENST00000569950 ALDH4A1P30038 563 aa8.99□□□□□ -0.97
VPS35-211ENST00000569950 SLC6A12P48065 614 aa8.99□□□□□ -0.97
VPS35-211ENST00000569950 GLRBP48167 497 aa8.99□□□□□ -0.97
VPS35-211ENST00000569950 RPIAP49247 311 aa8.99□□□□□ -0.97
VPS35-211ENST00000569950 RAB28P51157 221 aa8.99□□□□□ -0.97
VPS35-211ENST00000569950 DUSP3P51452 185 aaPredicted RBP8.99□□□□□ -0.97
VPS35-211ENST00000569950 NOVA1P51513 510 aaKnown RBP8.99□□□□□ -0.97
VPS35-211ENST00000569950 KPNA2P52292 529 aaKnown RBP8.99□□□□□ -0.97
VPS35-211ENST00000569950 SLC12A2P55011 1212 aa8.99□□□□□ -0.97
VPS35-211ENST00000569950 ATP6V0D1P61421 351 aa8.99□□□□□ -0.97
VPS35-211ENST00000569950 DAB2P98082 770 aa8.99□□□□□ -0.97
VPS35-211ENST00000569950 CDKL1Q00532 357 aa8.99□□□□□ -0.97
VPS35-211ENST00000569950 ZFP36L1Q07352 338 aaKnown RBP8.99□□□□□ -0.97
VPS35-211ENST00000569950 ILKQ13418 452 aa8.99□□□□□ -0.97
VPS35-211ENST00000569950 ACAP2Q15057 778 aa8.99□□□□□ -0.97
VPS35-211ENST00000569950 TGFBIQ15582 683 aa8.99□□□□□ -0.97
VPS35-211ENST00000569950 PRAMEF9Q5VWM5 478 aa8.99□□□□□ -0.97
VPS35-211ENST00000569950 C16orf46Q6P387 395 aa8.99□□□□□ -0.97
VPS35-211ENST00000569950 RAPH1Q70E73 1250 aa8.99□□□□□ -0.97
VPS35-211ENST00000569950 TAOK1Q7L7X3 1001 aa8.99□□□□□ -0.97
VPS35-211ENST00000569950 CCDC91Q7Z6B0 441 aa8.99□□□□□ -0.97
VPS35-211ENST00000569950 C4orf33Q8N1A6 199 aa8.99□□□□□ -0.97
VPS35-211ENST00000569950 AVL9Q8NBF6 648 aa8.99□□□□□ -0.97
VPS35-211ENST00000569950 PDPRQ8NCN5 879 aa8.99□□□□□ -0.97
VPS35-211ENST00000569950 PPFIBP2Q8ND30 876 aa8.99□□□□□ -0.97
VPS35-211ENST00000569950 OR4E2Q8NGC2 313 aa8.99□□□□□ -0.97
VPS35-211ENST00000569950 OR6C4Q8NGE1 309 aa8.99□□□□□ -0.97
VPS35-211ENST00000569950 OR2A1Q8NGT9 310 aa8.99□□□□□ -0.97
VPS35-211ENST00000569950 OR56A3Q8NH54 315 aa8.99□□□□□ -0.97
VPS35-211ENST00000569950 RHEBL1Q8TAI7 183 aa8.99□□□□□ -0.97
VPS35-211ENST00000569950 RHBDF1Q96CC6 855 aa8.99□□□□□ -0.97
VPS35-211ENST00000569950 FBXL8Q96CD0 374 aa8.99□□□□□ -0.97
VPS35-211ENST00000569950 DCBLD2Q96PD2 775 aa8.99□□□□□ -0.97
VPS35-211ENST00000569950 OR2A14Q96R47 310 aa8.99□□□□□ -0.97
VPS35-211ENST00000569950 OR4K3Q96R72 315 aa8.99□□□□□ -0.97
VPS35-211ENST00000569950 SGPP1Q9BX95 441 aa8.99□□□□□ -0.97
VPS35-211ENST00000569950 PITPNM3Q9BZ71 974 aa8.99□□□□□ -0.97
VPS35-211ENST00000569950 LRRN3Q9H3W5 708 aa8.99□□□□□ -0.97
VPS35-211ENST00000569950 VIPAS39Q9H9C1 493 aa8.99□□□□□ -0.97
VPS35-211ENST00000569950 KCNK4Q9NYG8 393 aa8.99□□□□□ -0.97
VPS35-211ENST00000569950 SPATA7Q9P0W8 599 aa8.99□□□□□ -0.97
VPS35-211ENST00000569950 XPR1Q9UBH6 696 aa8.99□□□□□ -0.97
VPS35-211ENST00000569950 POLG2Q9UHN1 485 aa8.99□□□□□ -0.97
VPS35-211ENST00000569950 POMT2Q9UKY4 750 aa8.99□□□□□ -0.97
VPS35-211ENST00000569950 CDV3Q9UKY7 258 aaKnown RBP8.99□□□□□ -0.97
VPS35-211ENST00000569950 TDRKHQ9Y2W6 561 aaKnown RBP8.99□□□□□ -0.97
VPS35-211ENST00000569950 COLEC10Q9Y6Z7 277 aa8.99□□□□□ -0.97
VPS35-211ENST00000569950 AHCTF1Q8WYP5 2266 aa8.99□□□□□ -0.97
VPS35-211ENST00000569950 CELSR3Q9NYQ7 3312 aa8.98□□□□□ -0.97
VPS35-211ENST00000569950 DMXL2Q8TDJ6 3036 aa8.98□□□□□ -0.97
VPS35-211ENST00000569950 IGHV5-10-1A0A0J9YXX1 117 aa8.98□□□□□ -0.97
VPS35-211ENST00000569950 PMS2P1A4D2B8 440 aa8.98□□□□□ -0.97
VPS35-211ENST00000569950 FAM221BA6H8Z2 402 aa8.98□□□□□ -0.97
VPS35-211ENST00000569950 OR6C74A6NCV1 312 aa8.98□□□□□ -0.97
VPS35-211ENST00000569950 LRRC14BA6NHZ5 514 aa8.98□□□□□ -0.97
VPS35-211ENST00000569950 RHPN2P1A8MT19 583 aa8.98□□□□□ -0.97
VPS35-211ENST00000569950 G3V2L1 256 aa8.98□□□□□ -0.97
VPS35-211ENST00000569950 UBXN8O00124 270 aa8.98□□□□□ -0.97
VPS35-211ENST00000569950 HCRTR1O43613 425 aa8.98□□□□□ -0.97
VPS35-211ENST00000569950 PRAMEF10O60809 474 aa8.98□□□□□ -0.97
VPS35-211ENST00000569950 SYF2O95926 243 aaKnown RBP8.98□□□□□ -0.97
VPS35-211ENST00000569950 PROCP04070 461 aa8.98□□□□□ -0.97
VPS35-211ENST00000569950 PROS1P07225 676 aa8.98□□□□□ -0.97
VPS35-211ENST00000569950 TYRP1P17643 537 aa8.98□□□□□ -0.97
VPS35-211ENST00000569950 KRT4P19013 534 aa8.98□□□□□ -0.97
VPS35-211ENST00000569950 POLR2CP19387 275 aaPredicted RBP8.98□□□□□ -0.97
VPS35-211ENST00000569950 CRHR1P34998 444 aa8.98□□□□□ -0.97
VPS35-211ENST00000569950 GGT5P36269 586 aa8.98□□□□□ -0.97
VPS35-211ENST00000569950 ETV4P43268 484 aa8.98□□□□□ -0.97
VPS35-211ENST00000569950 GABRA4P48169 554 aa8.98□□□□□ -0.97
VPS35-211ENST00000569950 AGTR2P50052 363 aa8.98□□□□□ -0.97
VPS35-211ENST00000569950 AP1S2P56377 157 aa8.98□□□□□ -0.97
VPS35-211ENST00000569950 GPLD1P80108 840 aa8.98□□□□□ -0.97
VPS35-211ENST00000569950 SIM1P81133 766 aaPredicted RBP8.98□□□□□ -0.97
VPS35-211ENST00000569950 IFFO1Q0D2I5 559 aa8.98□□□□□ -0.97
VPS35-211ENST00000569950 ZIC1Q15915 447 aa8.98□□□□□ -0.97
VPS35-211ENST00000569950 TAF1BQ53T94 588 aaPredicted RBP8.98□□□□□ -0.97
VPS35-211ENST00000569950 TTMPQ5BVD1 217 aa8.98□□□□□ -0.97
VPS35-211ENST00000569950 FBXO48Q5FWF7 155 aa8.98□□□□□ -0.97
VPS35-211ENST00000569950 FAM219BQ5XKK7 198 aa8.98□□□□□ -0.97
VPS35-211ENST00000569950 WDR74Q6RFH5 385 aaPredicted RBP8.98□□□□□ -0.97
VPS35-211ENST00000569950 AGTRAPQ6RW13 159 aa8.98□□□□□ -0.97
VPS35-211ENST00000569950 DHRS13Q6UX07 377 aa8.98□□□□□ -0.97
VPS35-211ENST00000569950 USP53Q70EK8 1073 aa8.98□□□□□ -0.97
VPS35-211ENST00000569950 ARHGAP22Q7Z5H3 698 aa8.98□□□□□ -0.97
VPS35-211ENST00000569950 RAB44Q7Z6P3 723 aaPredicted RBP8.98□□□□□ -0.97
VPS35-211ENST00000569950 ADAMTSL2Q86TH1 951 aa8.98□□□□□ -0.97
VPS35-211ENST00000569950 TBC1D1Q86TI0 1168 aaPredicted RBP8.98□□□□□ -0.97
VPS35-211ENST00000569950 AMIGO1Q86WK6 493 aa8.98□□□□□ -0.97
VPS35-211ENST00000569950 MARCH9Q86YJ5 346 aa8.98□□□□□ -0.97
VPS35-211ENST00000569950 TRIM48Q8IWZ4 208 aa8.98□□□□□ -0.97
VPS35-211ENST00000569950 FAM20CQ8IXL6 584 aa8.98□□□□□ -0.97
VPS35-211ENST00000569950 C2orf73Q8N5S3 287 aaPredicted RBP8.98□□□□□ -0.97
VPS35-211ENST00000569950 SKA2Q8WVK7 121 aaPredicted RBP8.98□□□□□ -0.97
VPS35-211ENST00000569950 LCN9Q8WX39 176 aa8.98□□□□□ -0.97
VPS35-211ENST00000569950 ESAMQ96AP7 390 aa8.98□□□□□ -0.97
VPS35-211ENST00000569950 SH3KBP1Q96B97 665 aa8.98□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 29.1 ms