RNA–Protein interactions for RNA: ENST00000569406.5

CLK3-226, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 3,591 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-226ENST00000569406 CPT1BQ92523 772 aa10.61□□□□□ -0.71
CLK3-226ENST00000569406 DPCDQ9BVM2 203 aaPredicted RBP10.61□□□□□ -0.71
CLK3-226ENST00000569406 TMEM181Q9P2C4 612 aa10.61□□□□□ -0.71
CLK3-226ENST00000569406 ZFR2Q9UPR6 939 aaKnown RBP10.61□□□□□ -0.71
CLK3-226ENST00000569406 SESN1Q9Y6P5 492 aa10.61□□□□□ -0.71
CLK3-226ENST00000569406 V9GYQ6 96 aa10.61□□□□□ -0.71
CLK3-226ENST00000569406 TRBV23OR9-2A0A075B6M9 112 aa10.61□□□□□ -0.71
CLK3-226ENST00000569406 CCDC78A2IDD5 438 aa10.61□□□□□ -0.71
CLK3-226ENST00000569406 EFCAB9A8MZ26 197 aa10.61□□□□□ -0.71
CLK3-226ENST00000569406 PMPCBO75439 489 aa10.61□□□□□ -0.71
CLK3-226ENST00000569406 CBX7O95931 251 aa10.61□□□□□ -0.71
CLK3-226ENST00000569406 KDELR1P24390 212 aa10.61□□□□□ -0.71
CLK3-226ENST00000569406 HK3P52790 923 aa10.61□□□□□ -0.71
CLK3-226ENST00000569406 C9orf152Q5JTZ5 239 aa10.61□□□□□ -0.71
CLK3-226ENST00000569406 IKBIPQ70UQ0 350 aa10.61□□□□□ -0.71
CLK3-226ENST00000569406 RHOUQ7L0Q8 258 aa10.61□□□□□ -0.71
CLK3-226ENST00000569406 SSX9Q7RTT3 188 aa10.61□□□□□ -0.71
CLK3-226ENST00000569406 MIB1Q86YT6 1006 aa10.61□□□□□ -0.71
CLK3-226ENST00000569406 ADGRG2Q8IZP9 1017 aa10.61□□□□□ -0.71
CLK3-226ENST00000569406 OR6C4Q8NGE1 309 aa10.61□□□□□ -0.71
CLK3-226ENST00000569406 CLHC1Q8NHS4 586 aa10.61□□□□□ -0.71
CLK3-226ENST00000569406 CELF6Q96J87 481 aaKnown RBP10.61□□□□□ -0.71
CLK3-226ENST00000569406 TFB2MQ9H5Q4 396 aaKnown RBP10.61□□□□□ -0.71
CLK3-226ENST00000569406 LDAHQ9H6V9 325 aa10.61□□□□□ -0.71
CLK3-226ENST00000569406 ZBTB20Q9HC78 741 aaPredicted RBP10.61□□□□□ -0.71
CLK3-226ENST00000569406 PRM3Q9NNZ6 103 aa10.61□□□□□ -0.71
CLK3-226ENST00000569406 PIAS3Q9Y6X2 628 aa10.61□□□□□ -0.71
CLK3-226ENST00000569406 C2orf74A8MZ97 194 aa10.6□□□□□ -0.71
CLK3-226ENST00000569406 KBTBD13C9JR72 458 aa10.6□□□□□ -0.71
CLK3-226ENST00000569406 TMEM63AO94886 807 aa10.6□□□□□ -0.71
CLK3-226ENST00000569406 C1QBP02746 253 aa10.6□□□□□ -0.71
CLK3-226ENST00000569406 TRAPPC2P0DI81 140 aa10.6□□□□□ -0.71
CLK3-226ENST00000569406 TRAPPC2BP0DI82 140 aa10.6□□□□□ -0.71
CLK3-226ENST00000569406 CKMT1AP12532 417 aa10.6□□□□□ -0.71
CLK3-226ENST00000569406 TMEM11P17152 192 aa10.6□□□□□ -0.71
CLK3-226ENST00000569406 ELK3P41970 407 aa10.6□□□□□ -0.71
CLK3-226ENST00000569406 MAP2K4P45985 399 aa10.6□□□□□ -0.71
CLK3-226ENST00000569406 RIDAP52758 137 aaKnown RBP10.6□□□□□ -0.71
CLK3-226ENST00000569406 EPHA5P54756 1037 aa10.6□□□□□ -0.71
CLK3-226ENST00000569406 RPA4Q13156 261 aa10.6□□□□□ -0.71
CLK3-226ENST00000569406 TOR1AIP1Q5JTV8 583 aa10.6□□□□□ -0.71
CLK3-226ENST00000569406 BHLHB9Q6PI77 547 aa10.6□□□□□ -0.71
CLK3-226ENST00000569406 TRILQ7L0X0 811 aa10.6□□□□□ -0.71
CLK3-226ENST00000569406 SLC26A11Q86WA9 606 aa10.6□□□□□ -0.71
CLK3-226ENST00000569406 C12orf29Q8N999 325 aa10.6□□□□□ -0.71
CLK3-226ENST00000569406 PPTC7Q8NI37 304 aa10.6□□□□□ -0.71
CLK3-226ENST00000569406 MAPK15Q8TD08 544 aa10.6□□□□□ -0.71
CLK3-226ENST00000569406 DCLRE1CQ96SD1 692 aaKnown RBP10.6□□□□□ -0.71
CLK3-226ENST00000569406 MROH8Q9H579 483 aa10.6□□□□□ -0.71
CLK3-226ENST00000569406 CDHR5Q9HBB8 845 aa10.6□□□□□ -0.71
CLK3-226ENST00000569406 RC3H2Q9HBD1 1191 aaKnown RBP10.6□□□□□ -0.71
CLK3-226ENST00000569406 SHOC2Q9UQ13 582 aa10.6□□□□□ -0.71
CLK3-226ENST00000569406 MKI67P46013 3256 aaKnown RBP10.6□□□□□ -0.71
CLK3-226ENST00000569406 PRORSD1PA6NEY8 169 aa10.6□□□□□ -0.71
CLK3-226ENST00000569406 E9PAM4 449 aa10.6□□□□□ -0.71
CLK3-226ENST00000569406 IL6P05231 212 aa10.6□□□□□ -0.71
CLK3-226ENST00000569406 ERVK-10P10266 1014 aa10.6□□□□□ -0.71
CLK3-226ENST00000569406 TYK2P29597 1187 aa10.6□□□□□ -0.71
CLK3-226ENST00000569406 ADCYAP1R1P41586 468 aa10.6□□□□□ -0.71
CLK3-226ENST00000569406 GNPDA1P46926 289 aa10.6□□□□□ -0.71
CLK3-226ENST00000569406 CDH6P55285 790 aa10.6□□□□□ -0.71
CLK3-226ENST00000569406 PTPN11Q06124 597 aaPredicted RBP10.6□□□□□ -0.71
CLK3-226ENST00000569406 TFDP2Q14188 446 aa10.6□□□□□ -0.71
CLK3-226ENST00000569406 SEC23BQ15437 767 aa10.6□□□□□ -0.71
CLK3-226ENST00000569406 ZBTB6Q15916 424 aa10.6□□□□□ -0.71
CLK3-226ENST00000569406 KLHL26Q53HC5 615 aa10.6□□□□□ -0.71
CLK3-226ENST00000569406 PDE12Q6L8Q7 609 aaKnown RBP10.6□□□□□ -0.71
CLK3-226ENST00000569406 TFAP2EQ6VUC0 442 aa10.6□□□□□ -0.71
CLK3-226ENST00000569406 THAP5Q7Z6K1 395 aa10.6□□□□□ -0.71
CLK3-226ENST00000569406 TMC8Q8IU68 726 aa10.6□□□□□ -0.71
CLK3-226ENST00000569406 IGDCC3Q8IVU1 814 aa10.6□□□□□ -0.71
CLK3-226ENST00000569406 ZBTB8OSQ8IWT0 167 aa10.6□□□□□ -0.71
CLK3-226ENST00000569406 PGAP3Q96FM1 320 aaPredicted RBP10.6□□□□□ -0.71
CLK3-226ENST00000569406 MYO19Q96H55 970 aa10.6□□□□□ -0.71
CLK3-226ENST00000569406 PFDN5Q99471 154 aa10.6□□□□□ -0.71
CLK3-226ENST00000569406 VRK1Q99986 396 aaPredicted RBP10.6□□□□□ -0.71
CLK3-226ENST00000569406 PELOQ9BRX2 385 aaKnown RBP10.6□□□□□ -0.71
CLK3-226ENST00000569406 SHARPINQ9H0F6 387 aa10.6□□□□□ -0.71
CLK3-226ENST00000569406 NIPAL2Q9H841 368 aa10.6□□□□□ -0.71
CLK3-226ENST00000569406 ERAP1Q9NZ08 941 aa10.6□□□□□ -0.71
CLK3-226ENST00000569406 E7ESA3 106 aa10.6□□□□□ -0.71
CLK3-226ENST00000569406 H3BQ06 376 aaPredicted RBP10.6□□□□□ -0.71
CLK3-226ENST00000569406 INPPL1O15357 1258 aa10.6□□□□□ -0.71
CLK3-226ENST00000569406 HCRTO43612 131 aa10.6□□□□□ -0.71
CLK3-226ENST00000569406 SERPINE1P05121 402 aa10.6□□□□□ -0.71
CLK3-226ENST00000569406 AGXTP21549 392 aa10.6□□□□□ -0.71
CLK3-226ENST00000569406 MIPP30301 263 aa10.6□□□□□ -0.71
CLK3-226ENST00000569406 KCNC3Q14003 757 aa10.6□□□□□ -0.71
CLK3-226ENST00000569406 COTL1Q14019 142 aa10.6□□□□□ -0.71
CLK3-226ENST00000569406 TRAM2Q15035 370 aa10.6□□□□□ -0.71
CLK3-226ENST00000569406 MBLAC2Q68D91 279 aa10.6□□□□□ -0.71
CLK3-226ENST00000569406 GLYATQ6IB77 296 aa10.6□□□□□ -0.71
CLK3-226ENST00000569406 IFNEQ86WN2 208 aa10.6□□□□□ -0.71
CLK3-226ENST00000569406 C10orf107Q8IVU9 208 aa10.6□□□□□ -0.71
CLK3-226ENST00000569406 TMEM176AQ96HP8 235 aa10.6□□□□□ -0.71
CLK3-226ENST00000569406 VAT1Q99536 393 aa10.6□□□□□ -0.71
CLK3-226ENST00000569406 ZNF251Q9BRH9 671 aa10.6□□□□□ -0.71
CLK3-226ENST00000569406 ACSS2Q9NR19 701 aa10.6□□□□□ -0.71
CLK3-226ENST00000569406 TBC1D24Q9ULP9 559 aa10.6□□□□□ -0.71
CLK3-226ENST00000569406 CLEC4AQ9UMR7 237 aa10.6□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 31.5 ms