RNA–Protein interactions for RNA: ENST00000567963.6

CLN3-229, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,452 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-229ENST00000567963 EURLQ9NYK6 297 aa15.47■□□□□ 0.07
CLN3-229ENST00000567963 NDOR1Q9UHB4 597 aa15.47■□□□□ 0.07
CLN3-229ENST00000567963 UTP20O75691 2785 aaKnown RBP15.47■□□□□ 0.07
CLN3-229ENST00000567963 ZSCAN5DPP0CG00 497 aa15.46■□□□□ 0.07
CLN3-229ENST00000567963 RPL22P35268 128 aaKnown RBP15.46■□□□□ 0.07
CLN3-229ENST00000567963 FOLR3P41439 243 aa15.46■□□□□ 0.07
CLN3-229ENST00000567963 TTPAP49638 278 aa15.46■□□□□ 0.07
CLN3-229ENST00000567963 RAPSNQ13702 412 aa15.46■□□□□ 0.07
CLN3-229ENST00000567963 INPP5JQ15735 1006 aaPredicted RBP15.46■□□□□ 0.07
CLN3-229ENST00000567963 CCNG2Q16589 344 aa15.46■□□□□ 0.07
CLN3-229ENST00000567963 NKAIN1Q4KMZ8 207 aa15.46■□□□□ 0.07
CLN3-229ENST00000567963 AARS2Q5JTZ9 985 aaKnown RBP15.46■□□□□ 0.07
CLN3-229ENST00000567963 MEI1Q5TIA1 1274 aa15.46■□□□□ 0.07
CLN3-229ENST00000567963 UNC5DQ6UXZ4 953 aa15.46■□□□□ 0.07
CLN3-229ENST00000567963 DCUN1D3Q8IWE4 304 aa15.46■□□□□ 0.07
CLN3-229ENST00000567963 KRT222Q8N1A0 295 aa15.46■□□□□ 0.07
CLN3-229ENST00000567963 C2orf73Q8N5S3 287 aaPredicted RBP15.46■□□□□ 0.07
CLN3-229ENST00000567963 LMNTD1Q8N9Z9 388 aa15.46■□□□□ 0.07
CLN3-229ENST00000567963 OR2Y1Q8NGV0 311 aa15.46■□□□□ 0.07
CLN3-229ENST00000567963 PTERQ96BW5 349 aa15.46■□□□□ 0.07
CLN3-229ENST00000567963 FER1L6-AS2Q96M78 137 aa15.46■□□□□ 0.07
CLN3-229ENST00000567963 NDC1Q9BTX1 674 aa15.46■□□□□ 0.07
CLN3-229ENST00000567963 MFRPQ9BY79 579 aa15.46■□□□□ 0.07
CLN3-229ENST00000567963 SLAMF7Q9NQ25 335 aa15.46■□□□□ 0.07
CLN3-229ENST00000567963 C5AR2Q9P296 337 aa15.46■□□□□ 0.07
CLN3-229ENST00000567963 MARCH4Q9P2E8 410 aaPredicted RBP15.46■□□□□ 0.07
CLN3-229ENST00000567963 CIDEBQ9UHD4 219 aa15.46■□□□□ 0.07
CLN3-229ENST00000567963 KLHL20Q9Y2M5 609 aa15.46■□□□□ 0.07
CLN3-229ENST00000567963 ANKRD12Q6UB98 2062 aa15.46■□□□□ 0.07
CLN3-229ENST00000567963 SHANK1Q9Y566 2161 aa15.46■□□□□ 0.07
CLN3-229ENST00000567963 USP9XQ93008 2570 aaPredicted RBP15.46■□□□□ 0.07
CLN3-229ENST00000567963 PRMT5O14744 637 aaPredicted RBP15.46■□□□□ 0.06
CLN3-229ENST00000567963 CD3EAPO15446 510 aaKnown RBP15.46■□□□□ 0.06
CLN3-229ENST00000567963 CNOT3O75175 753 aaKnown RBP15.46■□□□□ 0.06
CLN3-229ENST00000567963 S1PR4O95977 384 aa15.46■□□□□ 0.06
CLN3-229ENST00000567963 ATXN8OSP0DMR3 200 aa15.46■□□□□ 0.06
CLN3-229ENST00000567963 GCGRP47871 477 aa15.46■□□□□ 0.06
CLN3-229ENST00000567963 SLC9A5Q14940 896 aa15.46■□□□□ 0.06
CLN3-229ENST00000567963 RPS6KA1Q15418 735 aa15.46■□□□□ 0.06
CLN3-229ENST00000567963 SIX1Q15475 284 aaPredicted RBP15.46■□□□□ 0.06
CLN3-229ENST00000567963 DCAF10Q5QP82 559 aa15.46■□□□□ 0.06
CLN3-229ENST00000567963 SLC6A19Q695T7 634 aa15.46■□□□□ 0.06
CLN3-229ENST00000567963 MCATQ8IVS2 390 aaKnown RBP15.46■□□□□ 0.06
CLN3-229ENST00000567963 CLEC1AQ8NC01 280 aa15.46■□□□□ 0.06
CLN3-229ENST00000567963 OR2L8Q8NGY9 312 aa15.46■□□□□ 0.06
CLN3-229ENST00000567963 PNPLA2Q96AD5 504 aa15.46■□□□□ 0.06
CLN3-229ENST00000567963 P2RY12Q9H244 342 aa15.46■□□□□ 0.06
CLN3-229ENST00000567963 TREX1Q9NSU2 369 aa15.46■□□□□ 0.06
CLN3-229ENST00000567963 LUZP4Q9P127 313 aa15.46■□□□□ 0.06
CLN3-229ENST00000567963 DRG1Q9Y295 367 aaKnown RBP15.46■□□□□ 0.06
CLN3-229ENST00000567963 USP9YO00507 2555 aaPredicted RBP15.45■□□□□ 0.06
CLN3-229ENST00000567963 BLACEA4D250 179 aa15.45■□□□□ 0.06
CLN3-229ENST00000567963 PEX12O00623 359 aa15.45■□□□□ 0.06
CLN3-229ENST00000567963 RASGRF2O14827 1237 aa15.45■□□□□ 0.06
CLN3-229ENST00000567963 IGHEP01854 428 aa15.45■□□□□ 0.06
CLN3-229ENST00000567963 ALAS2P22557 587 aa15.45■□□□□ 0.06
CLN3-229ENST00000567963 SESN2P58004 480 aaPredicted RBP15.45■□□□□ 0.06
CLN3-229ENST00000567963 FOXL2P58012 376 aa15.45■□□□□ 0.06
CLN3-229ENST00000567963 CRADDP78560 199 aa15.45■□□□□ 0.06
CLN3-229ENST00000567963 FHL5Q5TD97 284 aa15.45■□□□□ 0.06
CLN3-229ENST00000567963 VWA5B1Q5TIE3 1220 aa15.45■□□□□ 0.06
CLN3-229ENST00000567963 PTRHD1Q6GMV3 140 aaKnown RBP15.45■□□□□ 0.06
CLN3-229ENST00000567963 DRICH1Q6PGQ1 229 aaPredicted RBP15.45■□□□□ 0.06
CLN3-229ENST00000567963 GALNT16Q8N428 558 aa15.45■□□□□ 0.06
CLN3-229ENST00000567963 DLG3Q92796 817 aa15.45■□□□□ 0.06
CLN3-229ENST00000567963 IL17FQ96PD4 163 aa15.45■□□□□ 0.06
CLN3-229ENST00000567963 PANX3Q96QZ0 392 aa15.45■□□□□ 0.06
CLN3-229ENST00000567963 IL22Q9GZX6 179 aa15.45■□□□□ 0.06
CLN3-229ENST00000567963 LRRC4CQ9HCJ2 640 aa15.45■□□□□ 0.06
CLN3-229ENST00000567963 EIF2B3Q9NR50 452 aaKnown RBP15.45■□□□□ 0.06
CLN3-229ENST00000567963 SLC22A11Q9NSA0 550 aa15.45■□□□□ 0.06
CLN3-229ENST00000567963 P4HTMQ9NXG6 502 aa15.45■□□□□ 0.06
CLN3-229ENST00000567963 CAMSAP3Q9P1Y5 1249 aaPredicted RBP15.45■□□□□ 0.06
CLN3-229ENST00000567963 SLC39A10Q9ULF5 831 aa15.45■□□□□ 0.06
CLN3-229ENST00000567963 UMODP07911 640 aa15.44■□□□□ 0.06
CLN3-229ENST00000567963 GRIA3P42263 894 aa15.44■□□□□ 0.06
CLN3-229ENST00000567963 NPY2RP49146 381 aa15.44■□□□□ 0.06
CLN3-229ENST00000567963 ARSFP54793 590 aa15.44■□□□□ 0.06
CLN3-229ENST00000567963 TMED2Q15363 201 aa15.44■□□□□ 0.06
CLN3-229ENST00000567963 SF1Q15637 639 aaKnown RBP15.44■□□□□ 0.06
CLN3-229ENST00000567963 PRR30Q53SZ7 412 aaPredicted RBP15.44■□□□□ 0.06
CLN3-229ENST00000567963 FCRL6Q6DN72 434 aa15.44■□□□□ 0.06
CLN3-229ENST00000567963 TTC23LQ6PF05 361 aa15.44■□□□□ 0.06
CLN3-229ENST00000567963 FIGLAQ6QHK4 219 aa15.44■□□□□ 0.06
CLN3-229ENST00000567963 C4orf22Q6V702 233 aa15.44■□□□□ 0.06
CLN3-229ENST00000567963 TTLL10Q6ZVT0 673 aa15.44■□□□□ 0.06
CLN3-229ENST00000567963 TAX1BP1Q86VP1 789 aa15.44■□□□□ 0.06
CLN3-229ENST00000567963 TMEM151BQ8IW70 566 aa15.44■□□□□ 0.06
CLN3-229ENST00000567963 DENND1AQ8TEH3 1009 aa15.44■□□□□ 0.06
CLN3-229ENST00000567963 ZNF552Q9H707 407 aaPredicted RBP15.44■□□□□ 0.06
CLN3-229ENST00000567963 INTS7Q9NVH2 962 aaKnown RBP15.44■□□□□ 0.06
CLN3-229ENST00000567963 GNPTGQ9UJJ9 305 aa15.44■□□□□ 0.06
CLN3-229ENST00000567963 RP1L1Q8IWN7 2480 aaPredicted RBP15.43■□□□□ 0.06
CLN3-229ENST00000567963 TCP11X1B4DZS4 312 aa15.43■□□□□ 0.06
CLN3-229ENST00000567963 AP3B1O00203 1094 aa15.43■□□□□ 0.06
CLN3-229ENST00000567963 KPNA5O15131 536 aa15.43■□□□□ 0.06
CLN3-229ENST00000567963 PRICKLE3O43900 615 aaPredicted RBP15.43■□□□□ 0.06
CLN3-229ENST00000567963 AGFG2O95081 481 aa15.43■□□□□ 0.06
CLN3-229ENST00000567963 ONECUT2O95948 504 aa15.43■□□□□ 0.06
CLN3-229ENST00000567963 ITGAXP20702 1163 aa15.43■□□□□ 0.06
Retrieved 100 of 20,778 RNA–protein pairs in 44.5 ms