RNA–Protein interactions for RNA: ENST00000566926.1

CLK3-218, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 646 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-218ENST00000566926 KMT5CQ86Y97 462 aa13.05□□□□□ -0.32
CLK3-218ENST00000566926 TBC1D21Q8IYX1 336 aa13.05□□□□□ -0.32
CLK3-218ENST00000566926 CYP4X1Q8N118 509 aa13.05□□□□□ -0.32
CLK3-218ENST00000566926 LCN9Q8WX39 176 aa13.05□□□□□ -0.32
CLK3-218ENST00000566926 TSPAN17Q96FV3 270 aa13.05□□□□□ -0.32
CLK3-218ENST00000566926 VPS39Q96JC1 886 aa13.05□□□□□ -0.32
CLK3-218ENST00000566926 GPR22Q99680 433 aa13.05□□□□□ -0.32
CLK3-218ENST00000566926 HRASLS2Q9NWW9 162 aa13.05□□□□□ -0.32
CLK3-218ENST00000566926 OCIAD1Q9NX40 245 aa13.05□□□□□ -0.32
CLK3-218ENST00000566926 NKIRAS1Q9NYS0 192 aa13.05□□□□□ -0.32
CLK3-218ENST00000566926 POLG2Q9UHN1 485 aa13.05□□□□□ -0.32
CLK3-218ENST00000566926 COMMD10Q9Y6G5 202 aa13.05□□□□□ -0.32
CLK3-218ENST00000566926 UBA6A0AVT1 1052 aaPredicted RBP13.04□□□□□ -0.32
CLK3-218ENST00000566926 OR6C74A6NCV1 312 aa13.04□□□□□ -0.32
CLK3-218ENST00000566926 OR5K3A6NET4 321 aa13.04□□□□□ -0.32
CLK3-218ENST00000566926 POLR1CO15160 346 aaPredicted RBP13.04□□□□□ -0.32
CLK3-218ENST00000566926 TM9SF1O15321 606 aa13.04□□□□□ -0.32
CLK3-218ENST00000566926 ZWINTO95229 277 aa13.04□□□□□ -0.32
CLK3-218ENST00000566926 RPN2P04844 631 aa13.04□□□□□ -0.32
CLK3-218ENST00000566926 KRT4P19013 534 aa13.04□□□□□ -0.32
CLK3-218ENST00000566926 RPS3P23396 243 aaKnown RBP eCLIP13.04□□□□□ -0.321e-6■■□□□ 12.2
CLK3-218ENST00000566926 PREPP48147 710 aa13.04□□□□□ -0.32
CLK3-218ENST00000566926 CCT5P48643 541 aa13.04□□□□□ -0.32
CLK3-218ENST00000566926 ARL4DP49703 201 aa13.04□□□□□ -0.32
CLK3-218ENST00000566926 ATP1A2P50993 1020 aa13.04□□□□□ -0.32
CLK3-218ENST00000566926 POU4F1Q01851 419 aa13.04□□□□□ -0.32
CLK3-218ENST00000566926 SLC18A2Q05940 514 aa13.04□□□□□ -0.32
CLK3-218ENST00000566926 CLN3Q13286 438 aa13.04□□□□□ -0.32
CLK3-218ENST00000566926 SEMA3AQ14563 771 aa13.04□□□□□ -0.32
CLK3-218ENST00000566926 MROH9Q5TGP6 573 aa13.04□□□□□ -0.32
CLK3-218ENST00000566926 FAM92BQ6ZTR7 304 aa13.04□□□□□ -0.32
CLK3-218ENST00000566926 MICALCLQ6ZW33 695 aa13.04□□□□□ -0.32
CLK3-218ENST00000566926 BMPERQ8N8U9 685 aa13.04□□□□□ -0.32
CLK3-218ENST00000566926 KLHL6Q8WZ60 621 aa13.04□□□□□ -0.32
CLK3-218ENST00000566926 CCNL2Q96S94 520 aaPredicted RBP13.04□□□□□ -0.32
CLK3-218ENST00000566926 IQCGQ9H095 443 aaKnown RBP13.04□□□□□ -0.32
CLK3-218ENST00000566926 TRIT1Q9H3H1 467 aaKnown RBP13.04□□□□□ -0.32
CLK3-218ENST00000566926 SRMSQ9H3Y6 488 aa13.04□□□□□ -0.32
CLK3-218ENST00000566926 TFB2MQ9H5Q4 396 aaKnown RBP13.04□□□□□ -0.32
CLK3-218ENST00000566926 IL1RAPL1Q9NZN1 696 aa13.04□□□□□ -0.32
CLK3-218ENST00000566926 SEMA5BQ9P283 1151 aa13.04□□□□□ -0.32
CLK3-218ENST00000566926 MARCH4Q9P2E8 410 aaPredicted RBP13.04□□□□□ -0.32
CLK3-218ENST00000566926 ASF1AQ9Y294 204 aa13.04□□□□□ -0.32
CLK3-218ENST00000566926 B3GALT1Q9Y5Z6 326 aa13.04□□□□□ -0.32
CLK3-218ENST00000566926 PSAT1Q9Y617 370 aa13.04□□□□□ -0.32
CLK3-218ENST00000566926 SNRNP200O75643 2136 aaKnown RBP13.03□□□□□ -0.32
CLK3-218ENST00000566926 TLCD2A6NGC4 264 aa13.03□□□□□ -0.32
CLK3-218ENST00000566926 GOLGA8TH3BQL2 631 aa13.03□□□□□ -0.32
CLK3-218ENST00000566926 MAP3K7O43318 606 aa13.03□□□□□ -0.32
CLK3-218ENST00000566926 PIAS1O75925 651 aa13.03□□□□□ -0.32
CLK3-218ENST00000566926 AHSGP02765 367 aa13.03□□□□□ -0.32
CLK3-218ENST00000566926 CRABP2P29373 138 aa13.03□□□□□ -0.32
CLK3-218ENST00000566926 TYK2P29597 1187 aa13.03□□□□□ -0.32
CLK3-218ENST00000566926 CCNFP41002 786 aa13.03□□□□□ -0.32
CLK3-218ENST00000566926 MAGEA12P43365 314 aa13.03□□□□□ -0.32
CLK3-218ENST00000566926 SEPHS1P49903 392 aa13.03□□□□□ -0.32
CLK3-218ENST00000566926 SLC12A2P55011 1212 aa13.03□□□□□ -0.32
CLK3-218ENST00000566926 FOXM1Q08050 763 aa13.03□□□□□ -0.32
CLK3-218ENST00000566926 HSPA14Q0VDF9 509 aa13.03□□□□□ -0.32
CLK3-218ENST00000566926 CTBP1Q13363 440 aa13.03□□□□□ -0.32
CLK3-218ENST00000566926 IL11RAQ14626 422 aa13.03□□□□□ -0.32
CLK3-218ENST00000566926 TAF1BQ53T94 588 aaPredicted RBP13.03□□□□□ -0.32
CLK3-218ENST00000566926 ANKS6Q68DC2 871 aa13.03□□□□□ -0.32
CLK3-218ENST00000566926 GPR155Q7Z3F1 870 aa13.03□□□□□ -0.32
CLK3-218ENST00000566926 LDB1Q86U70 411 aaPredicted RBP13.03□□□□□ -0.32
CLK3-218ENST00000566926 BPHLQ86WA6 291 aaPredicted RBP13.03□□□□□ -0.32
CLK3-218ENST00000566926 DENND6AQ8IWF6 608 aa13.03□□□□□ -0.32
CLK3-218ENST00000566926 PHC3Q8NDX5 983 aa13.03□□□□□ -0.32
CLK3-218ENST00000566926 OR4E2Q8NGC2 313 aa13.03□□□□□ -0.32
CLK3-218ENST00000566926 JPH3Q8WXH2 748 aaPredicted RBP13.03□□□□□ -0.32
CLK3-218ENST00000566926 APOPT1Q96IL0 206 aa13.03□□□□□ -0.32
CLK3-218ENST00000566926 P2RY12Q9H244 342 aa13.03□□□□□ -0.32
CLK3-218ENST00000566926 CCDC68Q9H2F9 335 aa13.03□□□□□ -0.32
CLK3-218ENST00000566926 WDR70Q9NW82 654 aa13.03□□□□□ -0.32
CLK3-218ENST00000566926 FOXJ2Q9P0K8 574 aa13.03□□□□□ -0.32
CLK3-218ENST00000566926 CAMSAP3Q9P1Y5 1249 aaPredicted RBP13.03□□□□□ -0.32
CLK3-218ENST00000566926 SSUH2Q9Y2M2 353 aa13.03□□□□□ -0.32
CLK3-218ENST00000566926 CELSR3Q9NYQ7 3312 aa13.03□□□□□ -0.32
CLK3-218ENST00000566926 CHD6Q8TD26 2715 aa13.03□□□□□ -0.32
CLK3-218ENST00000566926 TMEM120BA0PK00 339 aa13.02□□□□□ -0.33
CLK3-218ENST00000566926 HMX2A2RU54 273 aa13.02□□□□□ -0.33
CLK3-218ENST00000566926 GPC4O75487 556 aa13.02□□□□□ -0.33
CLK3-218ENST00000566926 RFPL1O75677 317 aa13.02□□□□□ -0.33
CLK3-218ENST00000566926 S1PR4O95977 384 aa13.02□□□□□ -0.33
CLK3-218ENST00000566926 ESR1P03372 595 aa13.02□□□□□ -0.33
CLK3-218ENST00000566926 GSTA1P08263 222 aa13.02□□□□□ -0.33
CLK3-218ENST00000566926 SPTBP11277 2137 aa13.02□□□□□ -0.33
CLK3-218ENST00000566926 COL6A2P12110 1019 aa13.02□□□□□ -0.33
CLK3-218ENST00000566926 ITGB6P18564 788 aa13.02□□□□□ -0.33
CLK3-218ENST00000566926 NELFEP18615 380 aaKnown RBP13.02□□□□□ -0.33
CLK3-218ENST00000566926 CD9P21926 228 aa13.02□□□□□ -0.33
CLK3-218ENST00000566926 AOAHP28039 575 aa13.02□□□□□ -0.33
CLK3-218ENST00000566926 ACADLP28330 430 aa13.02□□□□□ -0.33
CLK3-218ENST00000566926 CCR7P32248 378 aa13.02□□□□□ -0.33
CLK3-218ENST00000566926 SHMT2P34897 504 aa13.02□□□□□ -0.33
CLK3-218ENST00000566926 CRHR1P34998 444 aa13.02□□□□□ -0.33
CLK3-218ENST00000566926 SLC26A3P40879 764 aa13.02□□□□□ -0.33
CLK3-218ENST00000566926 CXADRP78310 365 aa13.02□□□□□ -0.33
CLK3-218ENST00000566926 ACY1Q03154 408 aa13.02□□□□□ -0.33
CLK3-218ENST00000566926 VAC14Q08AM6 782 aa13.02□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 45.6 ms