RNA–Protein interactions for RNA: ENST00000565316.6

CLN3-216, Transcript of CLN3, battenin, humanhuman

TSL 1 (best) BASIC

Gene CLN3, Length 1,318 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-216ENST00000565316 PPARGP37231 505 aaPredicted RBP16.46■□□□□ 0.23
CLN3-216ENST00000565316 CSE1LP55060 971 aaKnown RBP16.46■□□□□ 0.23
CLN3-216ENST00000565316 HSPA14Q0VDF9 509 aa16.46■□□□□ 0.23
CLN3-216ENST00000565316 RAPSNQ13702 412 aa16.46■□□□□ 0.23
CLN3-216ENST00000565316 MYBPC3Q14896 1274 aa16.46■□□□□ 0.23
CLN3-216ENST00000565316 FASTKD1Q53R41 847 aaKnown RBP16.46■□□□□ 0.23
CLN3-216ENST00000565316 UNC5DQ6UXZ4 953 aa16.46■□□□□ 0.23
CLN3-216ENST00000565316 PPP1R32Q7Z5V6 425 aa16.46■□□□□ 0.23
CLN3-216ENST00000565316 SLC13A5Q86YT5 568 aaPredicted RBP16.46■□□□□ 0.23
CLN3-216ENST00000565316 MCATQ8IVS2 390 aaKnown RBP16.46■□□□□ 0.23
CLN3-216ENST00000565316 GALNT16Q8N428 558 aa16.46■□□□□ 0.23
CLN3-216ENST00000565316 OR6P1Q8NGX9 317 aa16.46■□□□□ 0.23
CLN3-216ENST00000565316 LKAAEAR1Q8TD35 194 aa16.46■□□□□ 0.23
CLN3-216ENST00000565316 NDC1Q9BTX1 674 aa16.46■□□□□ 0.23
CLN3-216ENST00000565316 TSSK1BQ9BXA7 367 aa16.46■□□□□ 0.23
CLN3-216ENST00000565316 TXLNGQ9NUQ3 528 aa16.46■□□□□ 0.23
CLN3-216ENST00000565316 P4HTMQ9NXG6 502 aa16.46■□□□□ 0.23
CLN3-216ENST00000565316 LUZP4Q9P127 313 aa16.46■□□□□ 0.23
CLN3-216ENST00000565316 NDOR1Q9UHB4 597 aa16.46■□□□□ 0.23
CLN3-216ENST00000565316 HIVEP3Q5T1R4 2406 aa16.46■□□□□ 0.23
CLN3-216ENST00000565316 PEX12O00623 359 aa16.45■□□□□ 0.22
CLN3-216ENST00000565316 KLHL41O60662 606 aa16.45■□□□□ 0.22
CLN3-216ENST00000565316 SEMA7AO75326 666 aa16.45■□□□□ 0.22
CLN3-216ENST00000565316 RPN2P04844 631 aa16.45■□□□□ 0.22
CLN3-216ENST00000565316 ITGAXP20702 1163 aa16.45■□□□□ 0.22
CLN3-216ENST00000565316 MAGP20916 626 aa16.45■□□□□ 0.22
CLN3-216ENST00000565316 CD9P21926 228 aa16.45■□□□□ 0.22
CLN3-216ENST00000565316 PLEKHN1Q494U1 663 aaPredicted RBP16.45■□□□□ 0.22
CLN3-216ENST00000565316 AARS2Q5JTZ9 985 aaKnown RBP16.45■□□□□ 0.22
CLN3-216ENST00000565316 DCUN1D3Q8IWE4 304 aa16.45■□□□□ 0.22
CLN3-216ENST00000565316 FAM20CQ8IXL6 584 aa16.45■□□□□ 0.22
CLN3-216ENST00000565316 CLEC1AQ8NC01 280 aa16.45■□□□□ 0.22
CLN3-216ENST00000565316 OR2L8Q8NGY9 312 aa16.45■□□□□ 0.22
CLN3-216ENST00000565316 DLG3Q92796 817 aa16.45■□□□□ 0.22
CLN3-216ENST00000565316 NACC2Q96BF6 587 aa16.45■□□□□ 0.22
CLN3-216ENST00000565316 SLC22A18Q96BI1 424 aa16.45■□□□□ 0.22
CLN3-216ENST00000565316 ZNF552Q9H707 407 aaPredicted RBP16.45■□□□□ 0.22
CLN3-216ENST00000565316 RAB6BQ9NRW1 208 aa16.45■□□□□ 0.22
CLN3-216ENST00000565316 CUEDC1Q9NWM3 386 aaPredicted RBP16.45■□□□□ 0.22
CLN3-216ENST00000565316 ZNF148Q9UQR1 794 aa16.45■□□□□ 0.22
CLN3-216ENST00000565316 KLHL20Q9Y2M5 609 aa16.45■□□□□ 0.22
CLN3-216ENST00000565316 SNRNP200O75643 2136 aaKnown RBP16.45■□□□□ 0.22
CLN3-216ENST00000565316 ITPR2Q14571 2701 aa16.45■□□□□ 0.22
CLN3-216ENST00000565316 IQCF5A8MTL0 148 aa16.45■□□□□ 0.22
CLN3-216ENST00000565316 E7EVH7 732 aa16.45■□□□□ 0.22
CLN3-216ENST00000565316 PRMT5O14744 637 aaPredicted RBP16.45■□□□□ 0.22
CLN3-216ENST00000565316 S1PR4O95977 384 aa16.45■□□□□ 0.22
CLN3-216ENST00000565316 ALPPP05187 535 aa16.45■□□□□ 0.22
CLN3-216ENST00000565316 APOA4P06727 396 aa16.45■□□□□ 0.22
CLN3-216ENST00000565316 ETS1P14921 441 aa16.45■□□□□ 0.22
CLN3-216ENST00000565316 ARSFP54793 590 aa16.45■□□□□ 0.22
CLN3-216ENST00000565316 FOXL2P58012 376 aa16.45■□□□□ 0.22
CLN3-216ENST00000565316 PRAMEP78395 509 aa16.45■□□□□ 0.22
CLN3-216ENST00000565316 SLC9A5Q14940 896 aa16.45■□□□□ 0.22
CLN3-216ENST00000565316 SEL1L2Q5TEA6 688 aa16.45■□□□□ 0.22
CLN3-216ENST00000565316 PRUNE1Q86TP1 453 aa16.45■□□□□ 0.22
CLN3-216ENST00000565316 TMEM151BQ8IW70 566 aa16.45■□□□□ 0.22
CLN3-216ENST00000565316 DENND1AQ8TEH3 1009 aa16.45■□□□□ 0.22
CLN3-216ENST00000565316 SSC4DQ8WTU2 575 aa16.45■□□□□ 0.22
CLN3-216ENST00000565316 C1orf54Q8WWF1 131 aa16.45■□□□□ 0.22
CLN3-216ENST00000565316 FKBP10Q96AY3 582 aa16.45■□□□□ 0.22
CLN3-216ENST00000565316 ZNF285Q96NJ3 590 aa16.45■□□□□ 0.22
CLN3-216ENST00000565316 SLC29A3Q9BZD2 475 aa16.45■□□□□ 0.22
CLN3-216ENST00000565316 CHRAC1Q9NRG0 131 aa16.45■□□□□ 0.22
CLN3-216ENST00000565316 PAK5Q9P286 719 aa16.45■□□□□ 0.22
CLN3-216ENST00000565316 MARCH4Q9P2E8 410 aaPredicted RBP16.45■□□□□ 0.22
CLN3-216ENST00000565316 PLEKHB1Q9UF11 243 aaPredicted RBP16.45■□□□□ 0.22
CLN3-216ENST00000565316 B3GNT3Q9Y2A9 372 aa16.45■□□□□ 0.22
CLN3-216ENST00000565316 A0A1B0GX78 115 aa16.44■□□□□ 0.22
CLN3-216ENST00000565316 RASGRF2O14827 1237 aa16.44■□□□□ 0.22
CLN3-216ENST00000565316 PRICKLE3O43900 615 aaPredicted RBP16.44■□□□□ 0.22
CLN3-216ENST00000565316 FKBP9O95302 570 aa16.44■□□□□ 0.22
CLN3-216ENST00000565316 APRTP07741 180 aa16.44■□□□□ 0.22
CLN3-216ENST00000565316 TTPAP49638 278 aa16.44■□□□□ 0.22
CLN3-216ENST00000565316 MRPL49Q13405 166 aaKnown RBP16.44■□□□□ 0.22
CLN3-216ENST00000565316 C4orf17Q53FE4 359 aa16.44■□□□□ 0.22
CLN3-216ENST00000565316 CRB2Q5IJ48 1285 aa16.44■□□□□ 0.22
CLN3-216ENST00000565316 PCID2Q5JVF3 399 aa16.44■□□□□ 0.22
CLN3-216ENST00000565316 YOD1Q5VVQ6 348 aaPredicted RBP16.44■□□□□ 0.22
CLN3-216ENST00000565316 FCRL6Q6DN72 434 aa16.44■□□□□ 0.22
CLN3-216ENST00000565316 FIGLAQ6QHK4 219 aa16.44■□□□□ 0.22
CLN3-216ENST00000565316 OVCH1Q7RTY7 1134 aa16.44■□□□□ 0.22
CLN3-216ENST00000565316 LMNTD1Q8N9Z9 388 aa16.44■□□□□ 0.22
CLN3-216ENST00000565316 PPHLN1Q8NEY8 458 aaKnown RBP16.44■□□□□ 0.22
CLN3-216ENST00000565316 C19orf60Q96EN9 201 aa16.44■□□□□ 0.22
CLN3-216ENST00000565316 IL17FQ96PD4 163 aa16.44■□□□□ 0.22
CLN3-216ENST00000565316 P2RY12Q9H244 342 aa16.44■□□□□ 0.22
CLN3-216ENST00000565316 SLC26A1Q9H2B4 701 aa16.44■□□□□ 0.22
CLN3-216ENST00000565316 WDR54Q9H977 334 aa16.44■□□□□ 0.22
CLN3-216ENST00000565316 TREX1Q9NSU2 369 aa16.44■□□□□ 0.22
CLN3-216ENST00000565316 CATSPERZQ9NTU4 200 aa16.44■□□□□ 0.22
CLN3-216ENST00000565316 IRAK4Q9NWZ3 460 aa16.44■□□□□ 0.22
CLN3-216ENST00000565316 KLK4Q9Y5K2 254 aa16.44■□□□□ 0.22
CLN3-216ENST00000565316 AGPSO00116 658 aa16.43■□□□□ 0.22
CLN3-216ENST00000565316 CD3EAPO15446 510 aaKnown RBP16.43■□□□□ 0.22
CLN3-216ENST00000565316 IPO13O94829 963 aaKnown RBP16.43■□□□□ 0.22
CLN3-216ENST00000565316 ALBP02768 609 aa16.43■□□□□ 0.22
CLN3-216ENST00000565316 RNF224P0DH78 156 aa16.43■□□□□ 0.22
CLN3-216ENST00000565316 ALAS2P22557 587 aa16.43■□□□□ 0.22
CLN3-216ENST00000565316 RPL22P35268 128 aaKnown RBP16.43■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 21.9 ms