RNA–Protein interactions for RNA: ENST00000560427.1

NEDD8-208, Transcript of neural precursor cell expressed, developmentally down-regulated 8, humanhuman

TSL 2

Gene NEDD8, Length 654 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD8-208ENST00000560427 SLC12A9Q9BXP2 914 aa12.58□□□□□ -0.4
NEDD8-208ENST00000560427 FBXO8Q9NRD0 319 aa12.58□□□□□ -0.4
NEDD8-208ENST00000560427 PLAGL1Q9UM63 463 aa12.58□□□□□ -0.4
NEDD8-208ENST00000560427 NOVA2Q9UNW9 492 aaKnown RBP12.58□□□□□ -0.4
NEDD8-208ENST00000560427 BTRCQ9Y297 605 aa12.58□□□□□ -0.4
NEDD8-208ENST00000560427 IGHV5-51A0A0C4DH38 117 aa12.57□□□□□ -0.4
NEDD8-208ENST00000560427 EFCAB7A8K855 629 aa12.57□□□□□ -0.4
NEDD8-208ENST00000560427 KIF1CO43896 1103 aaKnown RBP12.57□□□□□ -0.4
NEDD8-208ENST00000560427 PIAS1O75925 651 aa12.57□□□□□ -0.4
NEDD8-208ENST00000560427 WISP3O95389 354 aaPredicted RBP12.57□□□□□ -0.4
NEDD8-208ENST00000560427 HIST1H2AGP0C0S8 130 aaPredicted RBP12.57□□□□□ -0.4
NEDD8-208ENST00000560427 MSL3P1P0C860 447 aa12.57□□□□□ -0.4
NEDD8-208ENST00000560427 FGF3P11487 239 aaPredicted RBP12.57□□□□□ -0.4
NEDD8-208ENST00000560427 HGFP14210 728 aa12.57□□□□□ -0.4
NEDD8-208ENST00000560427 UGT2B7P16662 529 aa12.57□□□□□ -0.4
NEDD8-208ENST00000560427 ITIH1P19827 911 aa12.57□□□□□ -0.4
NEDD8-208ENST00000560427 HIST1H2ADP20671 130 aa12.57□□□□□ -0.4
NEDD8-208ENST00000560427 CRABP2P29373 138 aa12.57□□□□□ -0.4
NEDD8-208ENST00000560427 AP1S2P56377 157 aa12.57□□□□□ -0.4
NEDD8-208ENST00000560427 PCBP4P57723 403 aaKnown RBP12.57□□□□□ -0.4
NEDD8-208ENST00000560427 RAB10P61026 200 aa12.57□□□□□ -0.4
NEDD8-208ENST00000560427 IL11RAQ14626 422 aa12.57□□□□□ -0.4
NEDD8-208ENST00000560427 TMTC4Q5T4D3 741 aa12.57□□□□□ -0.4
NEDD8-208ENST00000560427 DCAF12Q5T6F0 453 aa12.57□□□□□ -0.4
NEDD8-208ENST00000560427 FOXR1Q6PIV2 292 aa12.57□□□□□ -0.4
NEDD8-208ENST00000560427 CEACAM20Q6UY09 585 aa12.57□□□□□ -0.4
NEDD8-208ENST00000560427 UBE2R2Q712K3 238 aaPredicted RBP12.57□□□□□ -0.4
NEDD8-208ENST00000560427 PROSER1Q86XN7 944 aa12.57□□□□□ -0.4
NEDD8-208ENST00000560427 OR8K5Q8NH50 307 aa12.57□□□□□ -0.4
NEDD8-208ENST00000560427 MDM1Q8TC05 714 aa12.57□□□□□ -0.4
NEDD8-208ENST00000560427 DENND1AQ8TEH3 1009 aa12.57□□□□□ -0.4
NEDD8-208ENST00000560427 SMPDL3AQ92484 453 aa12.57□□□□□ -0.4
NEDD8-208ENST00000560427 FGF11Q92914 225 aa12.57□□□□□ -0.4
NEDD8-208ENST00000560427 HIST1H2AHQ96KK5 128 aa12.57□□□□□ -0.4
NEDD8-208ENST00000560427 OR2A14Q96R47 310 aa12.57□□□□□ -0.4
NEDD8-208ENST00000560427 HIST1H2AJQ99878 128 aa12.57□□□□□ -0.4
NEDD8-208ENST00000560427 H2AFJQ9BTM1 129 aa12.57□□□□□ -0.4
NEDD8-208ENST00000560427 TRIM54Q9BYV2 358 aa12.57□□□□□ -0.4
NEDD8-208ENST00000560427 TXLNGYQ9BZA5 131 aa12.57□□□□□ -0.4
NEDD8-208ENST00000560427 ANKZF1Q9H8Y5 726 aa12.57□□□□□ -0.4
NEDD8-208ENST00000560427 PARVBQ9HBI1 364 aa12.57□□□□□ -0.4
NEDD8-208ENST00000560427 GPAMQ9HCL2 828 aa12.57□□□□□ -0.4
NEDD8-208ENST00000560427 INTS7Q9NVH2 962 aaKnown RBP12.57□□□□□ -0.4
NEDD8-208ENST00000560427 TSR3Q9UJK0 312 aaKnown RBP12.57□□□□□ -0.4
NEDD8-208ENST00000560427 IKBKGQ9Y6K9 419 aa12.57□□□□□ -0.4
NEDD8-208ENST00000560427 CHD8Q9HCK8 2581 aa12.56□□□□□ -0.4
NEDD8-208ENST00000560427 A0A0J9YY10 115 aa12.56□□□□□ -0.4
NEDD8-208ENST00000560427 ISM1B1AKI9 464 aa12.56□□□□□ -0.4
NEDD8-208ENST00000560427 RIPK2O43353 540 aa12.56□□□□□ -0.4
NEDD8-208ENST00000560427 INHBAP08476 426 aa12.56□□□□□ -0.4
NEDD8-208ENST00000560427 CCL4P13236 92 aa12.56□□□□□ -0.4
NEDD8-208ENST00000560427 SAT1P21673 171 aa12.56□□□□□ -0.4
NEDD8-208ENST00000560427 CNTFP26441 200 aa12.56□□□□□ -0.4
NEDD8-208ENST00000560427 OAS2P29728 719 aaKnown RBP12.56□□□□□ -0.4
NEDD8-208ENST00000560427 PEBP1P30086 187 aaKnown RBP12.56□□□□□ -0.4
NEDD8-208ENST00000560427 SLC26A3P40879 764 aa12.56□□□□□ -0.4
NEDD8-208ENST00000560427 SEPHS1P49903 392 aa12.56□□□□□ -0.4
NEDD8-208ENST00000560427 SERPINB9P50453 376 aa12.56□□□□□ -0.4
NEDD8-208ENST00000560427 MAPK10P53779 464 aa12.56□□□□□ -0.4
NEDD8-208ENST00000560427 PNLIPRP1P54315 467 aa12.56□□□□□ -0.4
NEDD8-208ENST00000560427 ATP6V0D1P61421 351 aa12.56□□□□□ -0.4
NEDD8-208ENST00000560427 EFTUD2Q15029 972 aaKnown RBP eCLIP12.56□□□□□ -0.4
NEDD8-208ENST00000560427 CCSMST1Q4G0I0 132 aa12.56□□□□□ -0.4
NEDD8-208ENST00000560427 WDR93Q6P2C0 686 aa12.56□□□□□ -0.4
NEDD8-208ENST00000560427 ADAMTSL2Q86TH1 951 aa12.56□□□□□ -0.4
NEDD8-208ENST00000560427 CEP97Q8IW35 865 aa12.56□□□□□ -0.4
NEDD8-208ENST00000560427 FLVCR1-AS1Q8TAF5 88 aa12.56□□□□□ -0.4
NEDD8-208ENST00000560427 SLC44A1Q8WWI5 657 aa12.56□□□□□ -0.4
NEDD8-208ENST00000560427 USP7Q93009 1102 aa12.56□□□□□ -0.4
NEDD8-208ENST00000560427 TCTN2Q96GX1 697 aa12.56□□□□□ -0.4
NEDD8-208ENST00000560427 CCDC138Q96M89 665 aa12.56□□□□□ -0.4
NEDD8-208ENST00000560427 IL17FQ96PD4 163 aa12.56□□□□□ -0.4
NEDD8-208ENST00000560427 FCRL4Q96PJ5 515 aa12.56□□□□□ -0.4
NEDD8-208ENST00000560427 PKP4Q99569 1192 aa12.56□□□□□ -0.4
NEDD8-208ENST00000560427 DERL2Q9GZP9 239 aa12.56□□□□□ -0.4
NEDD8-208ENST00000560427 FANCEQ9HB96 536 aa12.56□□□□□ -0.4
NEDD8-208ENST00000560427 PDE7BQ9NP56 450 aa12.56□□□□□ -0.4
NEDD8-208ENST00000560427 OCIAD1Q9NX40 245 aa12.56□□□□□ -0.4
NEDD8-208ENST00000560427 SOHLH2Q9NX45 425 aa12.56□□□□□ -0.4
NEDD8-208ENST00000560427 SLC39A1Q9NY26 324 aa12.56□□□□□ -0.4
NEDD8-208ENST00000560427 SPHK1Q9NYA1 384 aa12.56□□□□□ -0.4
NEDD8-208ENST00000560427 CAMSAP3Q9P1Y5 1249 aaPredicted RBP12.56□□□□□ -0.4
NEDD8-208ENST00000560427 FETUBQ9UGM5 382 aa12.56□□□□□ -0.4
NEDD8-208ENST00000560427 ZNF180Q9UJW8 692 aa12.56□□□□□ -0.4
NEDD8-208ENST00000560427 MTO1Q9Y2Z2 717 aaKnown RBP12.56□□□□□ -0.4
NEDD8-208ENST00000560427 KLK4Q9Y5K2 254 aa12.56□□□□□ -0.4
NEDD8-208ENST00000560427 ACACBO00763 2458 aa12.56□□□□□ -0.4
NEDD8-208ENST00000560427 CCDC189A1A4V9 331 aa12.55□□□□□ -0.4
NEDD8-208ENST00000560427 PMS2P1A4D2B8 440 aa12.55□□□□□ -0.4
NEDD8-208ENST00000560427 C9orf172C9J069 976 aa12.55□□□□□ -0.4
NEDD8-208ENST00000560427 IQCJ-SCHIP1C9J366 451 aaPredicted RBP12.55□□□□□ -0.4
NEDD8-208ENST00000560427 POLR1CO15160 346 aaPredicted RBP12.55□□□□□ -0.4
NEDD8-208ENST00000560427 PRICKLE3O43900 615 aaPredicted RBP12.55□□□□□ -0.4
NEDD8-208ENST00000560427 CCNDBP1O95273 360 aa12.55□□□□□ -0.4
NEDD8-208ENST00000560427 SLC16A8O95907 504 aa12.55□□□□□ -0.4
NEDD8-208ENST00000560427 SYF2O95926 243 aaKnown RBP12.55□□□□□ -0.4
NEDD8-208ENST00000560427 FAM153BP0C7A2 387 aa12.55□□□□□ -0.4
NEDD8-208ENST00000560427 FGF5P12034 268 aa12.55□□□□□ -0.4
NEDD8-208ENST00000560427 ST6GAL1P15907 406 aa12.55□□□□□ -0.4
NEDD8-208ENST00000560427 CCND1P24385 295 aa12.55□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 47.3 ms