RNA–Protein interactions for RNA: ENST00000559340.1

LDLR-210, Transcript of low density lipoprotein receptor, humanhuman

TSL 5

Gene LDLR, Length 605 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-210ENST00000559340 PKP4Q99569 1192 aa8.96□□□□□ -0.98
LDLR-210ENST00000559340 CCDC3Q9BQI4 270 aa8.96□□□□□ -0.98
LDLR-210ENST00000559340 RAB33BQ9H082 229 aa8.96□□□□□ -0.98
LDLR-210ENST00000559340 MRPL46Q9H2W6 279 aaKnown RBP8.96□□□□□ -0.98
LDLR-210ENST00000559340 ALG9Q9H6U8 611 aa8.96□□□□□ -0.98
LDLR-210ENST00000559340 SSU72Q9NP77 194 aaKnown RBP8.96□□□□□ -0.98
LDLR-210ENST00000559340 IGSF5Q9NSI5 407 aa8.96□□□□□ -0.98
LDLR-210ENST00000559340 HRASLS2Q9NWW9 162 aa8.96□□□□□ -0.98
LDLR-210ENST00000559340 MKS1Q9NXB0 559 aa8.96□□□□□ -0.98
LDLR-210ENST00000559340 UTP6Q9NYH9 597 aaKnown RBP8.96□□□□□ -0.98
LDLR-210ENST00000559340 CD274Q9NZQ7 290 aa8.96□□□□□ -0.98
LDLR-210ENST00000559340 PDE10AQ9Y233 779 aa8.96□□□□□ -0.98
LDLR-210ENST00000559340 TPRP12270 2363 aaKnown RBP8.96□□□□□ -0.98
LDLR-210ENST00000559340 SEC16AO15027 2179 aa8.95□□□□□ -0.98
LDLR-210ENST00000559340 IGHV1OR21-1A0A087WYE8 117 aa8.95□□□□□ -0.98
LDLR-210ENST00000559340 LY6G6EA0A0G2JKS1 128 aa8.95□□□□□ -0.98
LDLR-210ENST00000559340 PIPSLA2A3N6 862 aa8.95□□□□□ -0.98
LDLR-210ENST00000559340 OR6C74A6NCV1 312 aa8.95□□□□□ -0.98
LDLR-210ENST00000559340 C2orf74A8MZ97 194 aa8.95□□□□□ -0.98
LDLR-210ENST00000559340 SUPT3HB4E1H0 165 aa8.95□□□□□ -0.98
LDLR-210ENST00000559340 MAP2K7O14733 419 aa8.95□□□□□ -0.98
LDLR-210ENST00000559340 TM4SF5O14894 197 aa8.95□□□□□ -0.98
LDLR-210ENST00000559340 B4GAT1O43505 415 aa8.95□□□□□ -0.98
LDLR-210ENST00000559340 SUPT3HO75486 399 aa8.95□□□□□ -0.98
LDLR-210ENST00000559340 IPO13O94829 963 aaKnown RBP8.95□□□□□ -0.98
LDLR-210ENST00000559340 CPNE6O95741 557 aa8.95□□□□□ -0.98
LDLR-210ENST00000559340 OAS2P29728 719 aaKnown RBP8.95□□□□□ -0.98
LDLR-210ENST00000559340 PKLRP30613 574 aa8.95□□□□□ -0.98
LDLR-210ENST00000559340 RPA3P35244 121 aaPredicted RBP8.95□□□□□ -0.98
LDLR-210ENST00000559340 ACADVLP49748 655 aa8.95□□□□□ -0.98
LDLR-210ENST00000559340 NOVA1P51513 510 aaKnown RBP8.95□□□□□ -0.98
LDLR-210ENST00000559340 PGGT1BP53609 377 aa8.95□□□□□ -0.98
LDLR-210ENST00000559340 PNLIPRP1P54315 467 aa8.95□□□□□ -0.98
LDLR-210ENST00000559340 OR1D5P58170 312 aa8.95□□□□□ -0.98
LDLR-210ENST00000559340 NAA20P61599 178 aa8.95□□□□□ -0.98
LDLR-210ENST00000559340 IRF9Q00978 393 aa8.95□□□□□ -0.98
LDLR-210ENST00000559340 ASPHQ12797 758 aa8.95□□□□□ -0.98
LDLR-210ENST00000559340 DLG1Q12959 904 aa8.95□□□□□ -0.98
LDLR-210ENST00000559340 SPIDRQ14159 915 aa8.95□□□□□ -0.98
LDLR-210ENST00000559340 KIR2DS3Q14952 304 aa8.95□□□□□ -0.98
LDLR-210ENST00000559340 TGFBIQ15582 683 aa8.95□□□□□ -0.98
LDLR-210ENST00000559340 CYP2A13Q16696 494 aa8.95□□□□□ -0.98
LDLR-210ENST00000559340 AMZ1Q400G9 498 aa8.95□□□□□ -0.98
LDLR-210ENST00000559340 HSP90B2PQ58FF3 399 aa8.95□□□□□ -0.98
LDLR-210ENST00000559340 CAPN13Q6MZZ7 669 aaPredicted RBP8.95□□□□□ -0.98
LDLR-210ENST00000559340 METTL2BQ6P1Q9 378 aaKnown RBP8.95□□□□□ -0.98
LDLR-210ENST00000559340 WDR74Q6RFH5 385 aaPredicted RBP8.95□□□□□ -0.98
LDLR-210ENST00000559340 SBSNQ6UWP8 590 aa8.95□□□□□ -0.98
LDLR-210ENST00000559340 SPRED1Q7Z699 444 aa8.95□□□□□ -0.98
LDLR-210ENST00000559340 CARFQ8N187 725 aa8.95□□□□□ -0.98
LDLR-210ENST00000559340 C4orf33Q8N1A6 199 aa8.95□□□□□ -0.98
LDLR-210ENST00000559340 CCDC63Q8NA47 563 aa8.95□□□□□ -0.98
LDLR-210ENST00000559340 RDH11Q8TC12 318 aa8.95□□□□□ -0.98
LDLR-210ENST00000559340 NCSTNQ92542 709 aa8.95□□□□□ -0.98
LDLR-210ENST00000559340 GRAMD1AQ96CP6 724 aa8.95□□□□□ -0.98
LDLR-210ENST00000559340 APOPT1Q96IL0 206 aa8.95□□□□□ -0.98
LDLR-210ENST00000559340 GFM1Q96RP9 751 aaKnown RBP8.95□□□□□ -0.98
LDLR-210ENST00000559340 MIPEPQ99797 713 aa8.95□□□□□ -0.98
LDLR-210ENST00000559340 HAUS8Q9BT25 410 aa8.95□□□□□ -0.98
LDLR-210ENST00000559340 TBC1D10AQ9BXI6 508 aa8.95□□□□□ -0.98
LDLR-210ENST00000559340 CAPS2Q9BXY5 557 aa8.95□□□□□ -0.98
LDLR-210ENST00000559340 INTS7Q9NVH2 962 aaKnown RBP8.95□□□□□ -0.98
LDLR-210ENST00000559340 AKAP7Q9P0M2 348 aaPredicted RBP8.95□□□□□ -0.98
LDLR-210ENST00000559340 EPHA6Q9UF33 1036 aa8.95□□□□□ -0.98
LDLR-210ENST00000559340 ADAMTS6Q9UKP5 1117 aa8.95□□□□□ -0.98
LDLR-210ENST00000559340 PCDHB11Q9Y5F2 797 aa8.95□□□□□ -0.98
LDLR-210ENST00000559340 TNPO3Q9Y5L0 923 aaKnown RBP8.95□□□□□ -0.98
LDLR-210ENST00000559340 U3KQA8 63 aa8.95□□□□□ -0.98
LDLR-210ENST00000559340 KIF26BQ2KJY2 2108 aa8.95□□□□□ -0.98
LDLR-210ENST00000559340 PTPRBP23467 1997 aa8.94□□□□□ -0.98
LDLR-210ENST00000559340 GSAPA4D1B5 854 aa8.94□□□□□ -0.98
LDLR-210ENST00000559340 OR5K3A6NET4 321 aa8.94□□□□□ -0.98
LDLR-210ENST00000559340 ISM1B1AKI9 464 aa8.94□□□□□ -0.98
LDLR-210ENST00000559340 HMGB1P1B2RPK0 211 aaPredicted RBP8.94□□□□□ -0.98
LDLR-210ENST00000559340 TM9SF1O15321 606 aa8.94□□□□□ -0.98
LDLR-210ENST00000559340 GUCA1CO95843 209 aa8.94□□□□□ -0.98
LDLR-210ENST00000559340 RPLP0P05388 317 aaKnown RBP8.94□□□□□ -0.98
LDLR-210ENST00000559340 CHRM5P08912 532 aaPredicted RBP8.94□□□□□ -0.98
LDLR-210ENST00000559340 ERGP11308 486 aa8.94□□□□□ -0.98
LDLR-210ENST00000559340 MYF5P13349 255 aa8.94□□□□□ -0.98
LDLR-210ENST00000559340 GFAPP14136 432 aa8.94□□□□□ -0.98
LDLR-210ENST00000559340 TYRP1P17643 537 aa8.94□□□□□ -0.98
LDLR-210ENST00000559340 POLR2CP19387 275 aaPredicted RBP8.94□□□□□ -0.98
LDLR-210ENST00000559340 HRH2P25021 359 aa8.94□□□□□ -0.98
LDLR-210ENST00000559340 GLRBP48167 497 aa8.94□□□□□ -0.98
LDLR-210ENST00000559340 PIK3CGP48736 1102 aa8.94□□□□□ -0.98
LDLR-210ENST00000559340 ALDH18A1P54886 795 aaKnown RBP8.94□□□□□ -0.98
LDLR-210ENST00000559340 CCL7P80098 99 aa8.94□□□□□ -0.98
LDLR-210ENST00000559340 ABATP80404 500 aa8.94□□□□□ -0.98
LDLR-210ENST00000559340 TRA2AQ13595 282 aaKnown RBP eCLIP8.94□□□□□ -0.98
LDLR-210ENST00000559340 OR4D1Q15615 310 aa8.94□□□□□ -0.98
LDLR-210ENST00000559340 PHKG1Q16816 387 aa8.94□□□□□ -0.98
LDLR-210ENST00000559340 CCDC157Q569K6 752 aa8.94□□□□□ -0.98
LDLR-210ENST00000559340 TNFAIP8L3Q5GJ75 292 aa8.94□□□□□ -0.98
LDLR-210ENST00000559340 TECRLQ5HYJ1 363 aa8.94□□□□□ -0.98
LDLR-210ENST00000559340 EEF1AKMT2Q5JPI9 291 aaKnown RBP8.94□□□□□ -0.98
LDLR-210ENST00000559340 PERM1Q5SV97 790 aa8.94□□□□□ -0.98
LDLR-210ENST00000559340 N4BP2L1Q5TBK1 243 aaPredicted RBP8.94□□□□□ -0.98
LDLR-210ENST00000559340 THEMIS2Q5TEJ8 643 aa8.94□□□□□ -0.98
LDLR-210ENST00000559340 TMEM71Q6P5X7 295 aa8.94□□□□□ -0.98
Retrieved 100 of 20,778 RNA–protein pairs in 26.9 ms