RNA–Protein interactions for RNA: ENST00000559119.1

VPS13C-208, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 2

Gene VPS13C, Length 738 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-208ENST00000559119 NR1D2Q14995 579 aa3.57□□□□□ -1.84
VPS13C-208ENST00000559119 FRRS1Q6ZNA5 592 aa3.57□□□□□ -1.84
VPS13C-208ENST00000559119 G2E3Q7L622 706 aa3.57□□□□□ -1.84
VPS13C-208ENST00000559119 SLC34A3Q8N130 599 aa3.57□□□□□ -1.84
VPS13C-208ENST00000559119 OR1L3Q8NH93 324 aa3.57□□□□□ -1.84
VPS13C-208ENST00000559119 GATAD1Q8WUU5 269 aa3.57□□□□□ -1.84
VPS13C-208ENST00000559119 SRSF8Q9BRL6 282 aaKnown RBP3.57□□□□□ -1.84
VPS13C-208ENST00000559119 SHARPINQ9H0F6 387 aa3.57□□□□□ -1.84
VPS13C-208ENST00000559119 CLIP2Q9UDT6 1046 aa3.57□□□□□ -1.84
VPS13C-208ENST00000559119 ZNF510Q9Y2H8 683 aa3.57□□□□□ -1.84
VPS13C-208ENST00000559119 LOC105371242A0A075B767 164 aa3.56□□□□□ -1.84
VPS13C-208ENST00000559119 IGKV6D-21A0A0A0MT36 114 aa3.56□□□□□ -1.84
VPS13C-208ENST00000559119 HEPACAM2A8MVW5 462 aa3.56□□□□□ -1.84
VPS13C-208ENST00000559119 WDPCPO95876 746 aa3.56□□□□□ -1.84
VPS13C-208ENST00000559119 MELTFP08582 738 aa3.56□□□□□ -1.84
VPS13C-208ENST00000559119 CLTBP09497 229 aa3.56□□□□□ -1.84
VPS13C-208ENST00000559119 FOLR2P14207 255 aa3.56□□□□□ -1.84
VPS13C-208ENST00000559119 GP9P14770 177 aa3.56□□□□□ -1.84
VPS13C-208ENST00000559119 MMP9P14780 707 aa3.56□□□□□ -1.84
VPS13C-208ENST00000559119 CAPGP40121 348 aa3.56□□□□□ -1.84
VPS13C-208ENST00000559119 ZFP36L2P47974 494 aaKnown RBP3.56□□□□□ -1.84
VPS13C-208ENST00000559119 CDH8P55286 799 aa3.56□□□□□ -1.84
VPS13C-208ENST00000559119 HERC3Q15034 1050 aa3.56□□□□□ -1.84
VPS13C-208ENST00000559119 ELFN2Q5R3F8 820 aa3.56□□□□□ -1.84
VPS13C-208ENST00000559119 CES4AQ5XG92 561 aa3.56□□□□□ -1.84
VPS13C-208ENST00000559119 NOTUMQ6P988 496 aa3.56□□□□□ -1.84
VPS13C-208ENST00000559119 TMCO3Q6UWJ1 677 aa3.56□□□□□ -1.84
VPS13C-208ENST00000559119 Q8N7P7 452 aa3.56□□□□□ -1.84
VPS13C-208ENST00000559119 PCYOX1LQ8NBM8 494 aa3.56□□□□□ -1.84
VPS13C-208ENST00000559119 NPEPL1Q8NDH3 523 aa3.56□□□□□ -1.84
VPS13C-208ENST00000559119 C7orf26Q96N11 449 aa3.56□□□□□ -1.84
VPS13C-208ENST00000559119 B3GAT2Q9NPZ5 323 aa3.56□□□□□ -1.84
VPS13C-208ENST00000559119 ABCB10Q9NRK6 738 aa3.56□□□□□ -1.84
VPS13C-208ENST00000559119 LARSQ9P2J5 1176 aaKnown RBP3.56□□□□□ -1.84
VPS13C-208ENST00000559119 B3GAT1Q9P2W7 334 aa3.56□□□□□ -1.84
VPS13C-208ENST00000559119 LRRC72A6NJI9 287 aa3.55□□□□□ -1.84
VPS13C-208ENST00000559119 TFECO14948 347 aaPredicted RBP3.55□□□□□ -1.84
VPS13C-208ENST00000559119 OR2C1O95371 312 aa3.55□□□□□ -1.84
VPS13C-208ENST00000559119 HOXD4P09016 255 aaPredicted RBP3.55□□□□□ -1.84
VPS13C-208ENST00000559119 VPREB1P12018 145 aa3.55□□□□□ -1.84
VPS13C-208ENST00000559119 OXTRP30559 389 aa3.55□□□□□ -1.84
VPS13C-208ENST00000559119 ARL3P36405 182 aa3.55□□□□□ -1.84
VPS13C-208ENST00000559119 LBX1P52954 281 aa3.55□□□□□ -1.84
VPS13C-208ENST00000559119 CDK3Q00526 305 aa3.55□□□□□ -1.84
VPS13C-208ENST00000559119 MTF1Q14872 753 aa3.55□□□□□ -1.84
VPS13C-208ENST00000559119 EFTUD2Q15029 972 aaKnown RBP eCLIP3.55□□□□□ -1.84
VPS13C-208ENST00000559119 ODF4Q2M2E3 257 aa3.55□□□□□ -1.84
VPS13C-208ENST00000559119 FIGLAQ6QHK4 219 aa3.55□□□□□ -1.84
VPS13C-208ENST00000559119 TMPRSS11FQ6ZWK6 438 aa3.55□□□□□ -1.84
VPS13C-208ENST00000559119 IKBIPQ70UQ0 350 aa3.55□□□□□ -1.84
VPS13C-208ENST00000559119 CHST9Q7L1S5 443 aa3.55□□□□□ -1.84
VPS13C-208ENST00000559119 SLC25A42Q86VD7 318 aa3.55□□□□□ -1.84
VPS13C-208ENST00000559119 CATSPERDQ86XM0 798 aa3.55□□□□□ -1.84
VPS13C-208ENST00000559119 OR11H4Q8NGC9 324 aa3.55□□□□□ -1.84
VPS13C-208ENST00000559119 TDRD7Q8NHU6 1098 aaKnown RBP3.55□□□□□ -1.84
VPS13C-208ENST00000559119 THAP2Q9H0W7 228 aa3.55□□□□□ -1.84
VPS13C-208ENST00000559119 PPIL3Q9H2H8 161 aaKnown RBP3.55□□□□□ -1.84
VPS13C-208ENST00000559119 HEXA-AS1Q9H8Q6 139 aa3.55□□□□□ -1.84
VPS13C-208ENST00000559119 FAM207AQ9NSI2 230 aaPredicted RBP3.55□□□□□ -1.84
VPS13C-208ENST00000559119 HACL1Q9UJ83 578 aa3.55□□□□□ -1.84
VPS13C-208ENST00000559119 ENO4A6NNW6 628 aa3.54□□□□□ -1.84
VPS13C-208ENST00000559119 GPRIN2O60269 458 aa3.54□□□□□ -1.84
VPS13C-208ENST00000559119 MITFO75030 526 aaPredicted RBP3.54□□□□□ -1.84
VPS13C-208ENST00000559119 AGR2O95994 175 aa3.54□□□□□ -1.84
VPS13C-208ENST00000559119 HSPA8P11142 646 aaKnown RBP3.54□□□□□ -1.84
VPS13C-208ENST00000559119 LAMP2P13473 410 aa3.54□□□□□ -1.84
VPS13C-208ENST00000559119 MNDAP41218 407 aa3.54□□□□□ -1.84
VPS13C-208ENST00000559119 SUOXP51687 545 aa3.54□□□□□ -1.84
VPS13C-208ENST00000559119 CSNK2BP67870 215 aa3.54□□□□□ -1.84
VPS13C-208ENST00000559119 TMF1P82094 1093 aa3.54□□□□□ -1.84
VPS13C-208ENST00000559119 TMEM95Q3KNT9 176 aa3.54□□□□□ -1.84
VPS13C-208ENST00000559119 ZNF841Q6ZN19 808 aa3.54□□□□□ -1.84
VPS13C-208ENST00000559119 HAUS6Q7Z4H7 955 aa3.54□□□□□ -1.84
VPS13C-208ENST00000559119 C11orf45Q8TAV5 145 aa3.54□□□□□ -1.84
VPS13C-208ENST00000559119 NPRL2Q8WTW4 380 aa3.54□□□□□ -1.84
VPS13C-208ENST00000559119 SCFD2Q8WU76 684 aa3.54□□□□□ -1.84
VPS13C-208ENST00000559119 RAD9AQ99638 391 aa3.54□□□□□ -1.84
VPS13C-208ENST00000559119 ZNF577Q9BSK1 485 aa3.54□□□□□ -1.84
VPS13C-208ENST00000559119 HRH4Q9H3N8 390 aa3.54□□□□□ -1.84
VPS13C-208ENST00000559119 CTSZQ9UBR2 303 aa3.54□□□□□ -1.84
VPS13C-208ENST00000559119 C19orf25Q9UFG5 118 aaPredicted RBP3.54□□□□□ -1.84
VPS13C-208ENST00000559119 CCDC180Q9P1Z9 1646 aa3.54□□□□□ -1.84
VPS13C-208ENST00000559119 C2orf81A6NN90 581 aa3.53□□□□□ -1.84
VPS13C-208ENST00000559119 MED24O75448 989 aa3.53□□□□□ -1.84
VPS13C-208ENST00000559119 DDHD2O94830 711 aa3.53□□□□□ -1.84
VPS13C-208ENST00000559119 DARSP14868 501 aaKnown RBP3.53□□□□□ -1.84
VPS13C-208ENST00000559119 GABRA5P31644 462 aa3.53□□□□□ -1.84
VPS13C-208ENST00000559119 GCNT1Q02742 428 aa3.53□□□□□ -1.84
VPS13C-208ENST00000559119 FCHO2Q0JRZ9 810 aa3.53□□□□□ -1.84
VPS13C-208ENST00000559119 TAF10Q12962 218 aa3.53□□□□□ -1.84
VPS13C-208ENST00000559119 SPDYCQ5MJ68 293 aa3.53□□□□□ -1.84
VPS13C-208ENST00000559119 GDPGP1Q6ZNW5 385 aa3.53□□□□□ -1.84
VPS13C-208ENST00000559119 CEP57L1Q8IYX8 460 aa3.53□□□□□ -1.84
VPS13C-208ENST00000559119 GPD1LQ8N335 351 aa3.53□□□□□ -1.84
VPS13C-208ENST00000559119 WDTC1Q8N5D0 677 aa3.53□□□□□ -1.84
VPS13C-208ENST00000559119 APOBEC4Q8WW27 367 aaKnown RBP3.53□□□□□ -1.84
VPS13C-208ENST00000559119 ATXN7L3BQ96GX2 97 aa3.53□□□□□ -1.84
VPS13C-208ENST00000559119 NEK1Q96PY6 1258 aa3.53□□□□□ -1.84
VPS13C-208ENST00000559119 PSMB7Q99436 277 aa3.53□□□□□ -1.84
VPS13C-208ENST00000559119 LGMNQ99538 433 aa3.53□□□□□ -1.84
Retrieved 100 of 20,778 RNA–protein pairs in 58.8 ms