RNA–Protein interactions for RNA: ENST00000558561.1

SPG11-211, Transcript of SPG11, spatacsin vesicle trafficking associated, humanhuman

TSL 3

Gene SPG11, Length 555 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPG11-211ENST00000558561 TRIP6Q15654 476 aaKnown RBP4.22□□□□□ -1.73
SPG11-211ENST00000558561 TAZQ16635 292 aa4.22□□□□□ -1.73
SPG11-211ENST00000558561 CDKN3Q16667 212 aa4.22□□□□□ -1.73
SPG11-211ENST00000558561 PARP15Q460N3 678 aa4.22□□□□□ -1.73
SPG11-211ENST00000558561 CD300EQ496F6 205 aaPredicted RBP4.22□□□□□ -1.73
SPG11-211ENST00000558561 TTC31Q49AM3 519 aaPredicted RBP4.22□□□□□ -1.73
SPG11-211ENST00000558561 SLC9A4Q6AI14 798 aa4.22□□□□□ -1.73
SPG11-211ENST00000558561 PPP4R4Q6NUP7 873 aa4.22□□□□□ -1.73
SPG11-211ENST00000558561 CRTC1Q6UUV9 634 aa4.22□□□□□ -1.73
SPG11-211ENST00000558561 TMCO3Q6UWJ1 677 aa4.22□□□□□ -1.73
SPG11-211ENST00000558561 RD3Q7Z3Z2 195 aa4.22□□□□□ -1.73
SPG11-211ENST00000558561 ABI3BPQ7Z7G0 1075 aa4.22□□□□□ -1.73
SPG11-211ENST00000558561 TRIM69Q86WT6 500 aa4.22□□□□□ -1.73
SPG11-211ENST00000558561 RFX6Q8HWS3 928 aa4.22□□□□□ -1.73
SPG11-211ENST00000558561 PSTKQ8IV42 348 aaKnown RBP4.22□□□□□ -1.73
SPG11-211ENST00000558561 TEX26Q8N6G2 289 aa4.22□□□□□ -1.73
SPG11-211ENST00000558561 ZNF557Q8N988 423 aaPredicted RBP4.22□□□□□ -1.73
SPG11-211ENST00000558561 CCNYQ8ND76 341 aa4.22□□□□□ -1.73
SPG11-211ENST00000558561 FAM46DQ8NEK8 389 aa4.22□□□□□ -1.73
SPG11-211ENST00000558561 CEP76Q8TAP6 659 aa4.22□□□□□ -1.73
SPG11-211ENST00000558561 SAP25Q8TEE9 199 aa4.22□□□□□ -1.73
SPG11-211ENST00000558561 TEKT4Q8WW24 435 aa4.22□□□□□ -1.73
SPG11-211ENST00000558561 MAML1Q92585 1016 aa4.22□□□□□ -1.73
SPG11-211ENST00000558561 ECHDC3Q96DC8 303 aa4.22□□□□□ -1.73
SPG11-211ENST00000558561 GDAP1L1Q96MZ0 367 aa4.22□□□□□ -1.73
SPG11-211ENST00000558561 AGAP3Q96P47 875 aa4.22□□□□□ -1.73
SPG11-211ENST00000558561 LENG8Q96PV6 779 aaPredicted RBP4.22□□□□□ -1.73
SPG11-211ENST00000558561 PSKH2Q96QS6 385 aa4.22□□□□□ -1.73
SPG11-211ENST00000558561 PANX2Q96RD6 677 aa4.22□□□□□ -1.73
SPG11-211ENST00000558561 PPP1R9BQ96SB3 815 aa4.22□□□□□ -1.73
SPG11-211ENST00000558561 EIF3CQ99613 913 aaKnown RBP4.22□□□□□ -1.73
SPG11-211ENST00000558561 SCNM1Q9BWG6 230 aa4.22□□□□□ -1.73
SPG11-211ENST00000558561 KRTAP4-5Q9BYR2 181 aa4.22□□□□□ -1.73
SPG11-211ENST00000558561 CLPBQ9H078 707 aa4.22□□□□□ -1.73
SPG11-211ENST00000558561 ABCG8Q9H221 673 aa4.22□□□□□ -1.73
SPG11-211ENST00000558561 SERHL2Q9H4I8 314 aa4.22□□□□□ -1.73
SPG11-211ENST00000558561 UNKLQ9H9P5 680 aaKnown RBP4.22□□□□□ -1.73
SPG11-211ENST00000558561 ARFGAP3Q9NP61 516 aa4.22□□□□□ -1.73
SPG11-211ENST00000558561 ETAA1Q9NY74 926 aa4.22□□□□□ -1.73
SPG11-211ENST00000558561 UVRAGQ9P2Y5 699 aa4.22□□□□□ -1.73
SPG11-211ENST00000558561 HPCAL4Q9UM19 191 aa4.22□□□□□ -1.73
SPG11-211ENST00000558561 SCML1Q9UN30 329 aa4.22□□□□□ -1.73
SPG11-211ENST00000558561 R3HDM2Q9Y2K5 976 aaKnown RBP4.22□□□□□ -1.73
SPG11-211ENST00000558561 TMEM98Q9Y2Y6 226 aa4.22□□□□□ -1.73
SPG11-211ENST00000558561 OR1A2Q9Y585 309 aa4.22□□□□□ -1.73
SPG11-211ENST00000558561 PCDHGB6Q9Y5F9 930 aa4.22□□□□□ -1.73
SPG11-211ENST00000558561 RAI2Q9Y5P3 530 aa4.22□□□□□ -1.73
SPG11-211ENST00000558561 U3KQA8 63 aa4.22□□□□□ -1.73
SPG11-211ENST00000558561 FRYQ5TBA9 3013 aa4.22□□□□□ -1.73
SPG11-211ENST00000558561 MAP1BP46821 2468 aaKnown RBP4.21□□□□□ -1.73
SPG11-211ENST00000558561 LRP4O75096 1905 aa4.21□□□□□ -1.74
SPG11-211ENST00000558561 hCG_1818297A0A087WSY0 165 aa4.21□□□□□ -1.74
SPG11-211ENST00000558561 PRAMEF33A0A0G2JMD5 474 aa4.21□□□□□ -1.74
SPG11-211ENST00000558561 A0A1W2PNU3 283 aaPredicted RBP4.21□□□□□ -1.74
SPG11-211ENST00000558561 A0A1W2PS29 197 aa4.21□□□□□ -1.74
SPG11-211ENST00000558561 TSPAN11A1L157 253 aa4.21□□□□□ -1.74
SPG11-211ENST00000558561 MACROD2A1Z1Q3 448 aa4.21□□□□□ -1.74
SPG11-211ENST00000558561 NPIPB15A6NHN6 443 aaPredicted RBP4.21□□□□□ -1.74
SPG11-211ENST00000558561 PRAMEF26H0Y7S4 382 aa4.21□□□□□ -1.74
SPG11-211ENST00000558561 FFAR2O15552 330 aa4.21□□□□□ -1.74
SPG11-211ENST00000558561 PRAMEF10O60809 474 aa4.21□□□□□ -1.74
SPG11-211ENST00000558561 TM7SF2O76062 418 aa4.21□□□□□ -1.74
SPG11-211ENST00000558561 RECQL5O94762 991 aaPredicted RBP4.21□□□□□ -1.74
SPG11-211ENST00000558561 FTCDO95954 541 aa4.21□□□□□ -1.74
SPG11-211ENST00000558561 IGSF6O95976 241 aa4.21□□□□□ -1.74
SPG11-211ENST00000558561 CHEK2O96017 543 aa4.21□□□□□ -1.74
SPG11-211ENST00000558561 AGTP01019 485 aa4.21□□□□□ -1.74
SPG11-211ENST00000558561 FSHBP01225 129 aa4.21□□□□□ -1.74
SPG11-211ENST00000558561 PCCBP05166 539 aa4.21□□□□□ -1.74
SPG11-211ENST00000558561 PIM1P11309 404 aaPredicted RBP4.21□□□□□ -1.74
SPG11-211ENST00000558561 CEACAM1P13688 526 aa4.21□□□□□ -1.74
SPG11-211ENST00000558561 CCNB1P14635 433 aa4.21□□□□□ -1.74
SPG11-211ENST00000558561 ETS1P14921 441 aa4.21□□□□□ -1.74
SPG11-211ENST00000558561 GNSP15586 552 aa4.21□□□□□ -1.74
SPG11-211ENST00000558561 CSRP1P21291 193 aaKnown RBP4.21□□□□□ -1.74
SPG11-211ENST00000558561 GATA3P23771 443 aa4.21□□□□□ -1.74
SPG11-211ENST00000558561 CCNCP24863 283 aa4.21□□□□□ -1.74
SPG11-211ENST00000558561 PTPN3P26045 913 aa4.21□□□□□ -1.74
SPG11-211ENST00000558561 RBL1P28749 1068 aa4.21□□□□□ -1.74
SPG11-211ENST00000558561 SLC7A1P30825 629 aa4.21□□□□□ -1.74
SPG11-211ENST00000558561 GNALP38405 381 aa4.21□□□□□ -1.74
SPG11-211ENST00000558561 CD86P42081 329 aa4.21□□□□□ -1.74
SPG11-211ENST00000558561 MMP13P45452 471 aa4.21□□□□□ -1.74
SPG11-211ENST00000558561 RXRGP48443 463 aa4.21□□□□□ -1.74
SPG11-211ENST00000558561 CSNK1DP48730 415 aa4.21□□□□□ -1.74
SPG11-211ENST00000558561 VAV2P52735 878 aa4.21□□□□□ -1.74
SPG11-211ENST00000558561 ARFIP2P53365 341 aa4.21□□□□□ -1.74
SPG11-211ENST00000558561 ATXN3P54252 364 aaPredicted RBP4.21□□□□□ -1.74
SPG11-211ENST00000558561 C21orf59P57076 290 aa4.21□□□□□ -1.74
SPG11-211ENST00000558561 PFN3P60673 137 aa4.21□□□□□ -1.74
SPG11-211ENST00000558561 MXRA7P84157 204 aa4.21□□□□□ -1.74
SPG11-211ENST00000558561 CCZ1BP86790 482 aa4.21□□□□□ -1.74
SPG11-211ENST00000558561 CCZ1P86791 482 aaPredicted RBP4.21□□□□□ -1.74
SPG11-211ENST00000558561 BCL2L1Q07817 233 aa4.21□□□□□ -1.74
SPG11-211ENST00000558561 AP1B1Q10567 949 aa4.21□□□□□ -1.74
SPG11-211ENST00000558561 MTA1Q13330 715 aa4.21□□□□□ -1.74
SPG11-211ENST00000558561 DYRK1AQ13627 763 aa4.21□□□□□ -1.74
SPG11-211ENST00000558561 TRIM14Q14142 442 aa4.21□□□□□ -1.74
SPG11-211ENST00000558561 GALNT3Q14435 633 aa4.21□□□□□ -1.74
SPG11-211ENST00000558561 SPARCL1Q14515 664 aa4.21□□□□□ -1.74
Retrieved 100 of 20,778 RNA–protein pairs in 31.6 ms