RNA–Protein interactions for RNA: ENST00000557302.1

SHMT2-228, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 3

Gene SHMT2, Length 457 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-228ENST00000557302 SPRP35270 261 aaPredicted RBP13.14□□□□□ -0.31
SHMT2-228ENST00000557302 PGGT1BP53609 377 aa13.14□□□□□ -0.31
SHMT2-228ENST00000557302 PCBP4P57723 403 aaKnown RBP13.14□□□□□ -0.31
SHMT2-228ENST00000557302 TAS2R39P59534 338 aa13.14□□□□□ -0.31
SHMT2-228ENST00000557302 HSD11B2P80365 405 aa13.14□□□□□ -0.31
SHMT2-228ENST00000557302 POU4F1Q01851 419 aa13.14□□□□□ -0.31
SHMT2-228ENST00000557302 FOXM1Q08050 763 aa13.14□□□□□ -0.31
SHMT2-228ENST00000557302 SP140Q13342 867 aa13.14□□□□□ -0.31
SHMT2-228ENST00000557302 EFTUD2Q15029 972 aaKnown RBP eCLIP13.14□□□□□ -0.314e-8■□□□□ 10.5
SHMT2-228ENST00000557302 DCAF12Q5T6F0 453 aa13.14□□□□□ -0.31
SHMT2-228ENST00000557302 GRTP1Q5TC63 336 aa13.14□□□□□ -0.31
SHMT2-228ENST00000557302 ANKS6Q68DC2 871 aa13.14□□□□□ -0.31
SHMT2-228ENST00000557302 FBXO38Q6PIJ6 1188 aa13.14□□□□□ -0.31
SHMT2-228ENST00000557302 CEACAM20Q6UY09 585 aa13.14□□□□□ -0.31
SHMT2-228ENST00000557302 UBE2R2Q712K3 238 aaPredicted RBP13.14□□□□□ -0.31
SHMT2-228ENST00000557302 TAX1BP1Q86VP1 789 aa13.14□□□□□ -0.31
SHMT2-228ENST00000557302 C2orf73Q8N5S3 287 aaPredicted RBP13.14□□□□□ -0.31
SHMT2-228ENST00000557302 FBXO15Q8NCQ5 510 aaPredicted RBP13.14□□□□□ -0.31
SHMT2-228ENST00000557302 SNIP1Q8TAD8 396 aaKnown RBP13.14□□□□□ -0.31
SHMT2-228ENST00000557302 DENND1AQ8TEH3 1009 aa13.14□□□□□ -0.31
SHMT2-228ENST00000557302 TSPAN17Q96FV3 270 aa13.14□□□□□ -0.31
SHMT2-228ENST00000557302 OR2A14Q96R47 310 aa13.14□□□□□ -0.31
SHMT2-228ENST00000557302 DDA1Q9BW61 102 aa13.14□□□□□ -0.31
SHMT2-228ENST00000557302 PITPNM3Q9BZ71 974 aa13.14□□□□□ -0.31
SHMT2-228ENST00000557302 ASPSCR1Q9BZE9 553 aa13.14□□□□□ -0.31
SHMT2-228ENST00000557302 TWSG1Q9GZX9 223 aa13.14□□□□□ -0.31
SHMT2-228ENST00000557302 ACSS3Q9H6R3 686 aa13.14□□□□□ -0.31
SHMT2-228ENST00000557302 POPDC3Q9HBV1 291 aa13.14□□□□□ -0.31
SHMT2-228ENST00000557302 FBXO8Q9NRD0 319 aa13.14□□□□□ -0.31
SHMT2-228ENST00000557302 SOHLH2Q9NX45 425 aa13.14□□□□□ -0.31
SHMT2-228ENST00000557302 MTO1Q9Y2Z2 717 aaKnown RBP13.14□□□□□ -0.31
SHMT2-228ENST00000557302 PCDHB11Q9Y5F2 797 aa13.14□□□□□ -0.31
SHMT2-228ENST00000557302 PCDHGA3Q9Y5H0 932 aa13.14□□□□□ -0.31
SHMT2-228ENST00000557302 NBEAQ8NFP9 2946 aa13.14□□□□□ -0.31
SHMT2-228ENST00000557302 DSPP15924 2871 aaKnown RBP13.13□□□□□ -0.31
SHMT2-228ENST00000557302 AHCTF1Q8WYP5 2266 aa13.13□□□□□ -0.31
SHMT2-228ENST00000557302 SLC9B1P1A6NJY1 282 aa13.13□□□□□ -0.31
SHMT2-228ENST00000557302 ZNF839A8K0R7 811 aa13.13□□□□□ -0.31
SHMT2-228ENST00000557302 C9orf172C9J069 976 aa13.13□□□□□ -0.31
SHMT2-228ENST00000557302 POLR1CO15160 346 aaPredicted RBP13.13□□□□□ -0.31
SHMT2-228ENST00000557302 SLC16A5O15375 505 aa13.13□□□□□ -0.31
SHMT2-228ENST00000557302 MAP3K7O43318 606 aa13.13□□□□□ -0.31
SHMT2-228ENST00000557302 TLX3O43711 291 aaPredicted RBP13.13□□□□□ -0.31
SHMT2-228ENST00000557302 TSPAN12O95859 305 aa13.13□□□□□ -0.31
SHMT2-228ENST00000557302 SYF2O95926 243 aaKnown RBP13.13□□□□□ -0.31
SHMT2-228ENST00000557302 ZNF37AP17032 561 aaPredicted RBP13.13□□□□□ -0.31
SHMT2-228ENST00000557302 CYP2A7P20853 494 aa13.13□□□□□ -0.31
SHMT2-228ENST00000557302 PEBP1P30086 187 aaKnown RBP13.13□□□□□ -0.31
SHMT2-228ENST00000557302 DEKP35659 375 aaKnown RBP13.13□□□□□ -0.31
SHMT2-228ENST00000557302 HSD17B2P37059 387 aa13.13□□□□□ -0.31
SHMT2-228ENST00000557302 SH3BP2P78314 561 aa13.13□□□□□ -0.31
SHMT2-228ENST00000557302 ZNF460Q14592 562 aa13.13□□□□□ -0.31
SHMT2-228ENST00000557302 USP10Q14694 798 aaKnown RBP13.13□□□□□ -0.31
SHMT2-228ENST00000557302 ARHGAP19Q14CB8 494 aa13.13□□□□□ -0.31
SHMT2-228ENST00000557302 CYP2A13Q16696 494 aa13.13□□□□□ -0.31
SHMT2-228ENST00000557302 SLC5A12Q1EHB4 618 aa13.13□□□□□ -0.31
SHMT2-228ENST00000557302 TMTC4Q5T4D3 741 aa13.13□□□□□ -0.31
SHMT2-228ENST00000557302 UBAP2Q5T6F2 1119 aaKnown RBP13.13□□□□□ -0.31
SHMT2-228ENST00000557302 CYB5D1Q6P9G0 228 aa13.13□□□□□ -0.31
SHMT2-228ENST00000557302 TRIM73Q86UV7 250 aa13.13□□□□□ -0.31
SHMT2-228ENST00000557302 RASGRP3Q8IV61 690 aa13.13□□□□□ -0.31
SHMT2-228ENST00000557302 D2HGDHQ8N465 521 aa13.13□□□□□ -0.31
SHMT2-228ENST00000557302 NKAPQ8N5F7 415 aaKnown RBP13.13□□□□□ -0.31
SHMT2-228ENST00000557302 EIF1ADQ8N9N8 165 aaKnown RBP13.13□□□□□ -0.31
SHMT2-228ENST00000557302 LMNTD1Q8N9Z9 388 aa13.13□□□□□ -0.31
SHMT2-228ENST00000557302 HMGCLL1Q8TB92 370 aa13.13□□□□□ -0.31
SHMT2-228ENST00000557302 MCOLN3Q8TDD5 553 aa13.13□□□□□ -0.31
SHMT2-228ENST00000557302 PMEPA1Q969W9 287 aa13.13□□□□□ -0.31
SHMT2-228ENST00000557302 PDLIM5Q96HC4 596 aaKnown RBP13.13□□□□□ -0.31
SHMT2-228ENST00000557302 TRAPPC9Q96Q05 1148 aa13.13□□□□□ -0.31
SHMT2-228ENST00000557302 TEFMQ96QE5 360 aaKnown RBP13.13□□□□□ -0.31
SHMT2-228ENST00000557302 OR6C1Q96RD1 312 aa13.13□□□□□ -0.31
SHMT2-228ENST00000557302 PKP4Q99569 1192 aa13.13□□□□□ -0.31
SHMT2-228ENST00000557302 GPR22Q99680 433 aa13.13□□□□□ -0.31
SHMT2-228ENST00000557302 CTRCQ99895 268 aa13.13□□□□□ -0.31
SHMT2-228ENST00000557302 ZPBPQ9BS86 351 aa13.13□□□□□ -0.31
SHMT2-228ENST00000557302 FUT8Q9BYC5 575 aa13.13□□□□□ -0.31
SHMT2-228ENST00000557302 SYTL2Q9HCH5 934 aa13.13□□□□□ -0.31
SHMT2-228ENST00000557302 GPAMQ9HCL2 828 aa13.13□□□□□ -0.31
SHMT2-228ENST00000557302 FOXJ2Q9P0K8 574 aa13.13□□□□□ -0.31
SHMT2-228ENST00000557302 ZMIZ1Q9ULJ6 1067 aa13.13□□□□□ -0.31
SHMT2-228ENST00000557302 BTRCQ9Y297 605 aa13.13□□□□□ -0.31
SHMT2-228ENST00000557302 RAXQ9Y2V3 346 aa13.13□□□□□ -0.31
SHMT2-228ENST00000557302 B3GALT1Q9Y5Z6 326 aa13.13□□□□□ -0.31
SHMT2-228ENST00000557302 A0A0J9YY10 115 aa13.12□□□□□ -0.31
SHMT2-228ENST00000557302 PABPN1LA6NDY0 278 aaKnown RBP13.12□□□□□ -0.31
SHMT2-228ENST00000557302 TAF4O00268 1085 aa13.12□□□□□ -0.31
SHMT2-228ENST00000557302 FAM155BO75949 473 aa13.12□□□□□ -0.31
SHMT2-228ENST00000557302 SLU7O95391 586 aaKnown RBP13.12□□□□□ -0.31
SHMT2-228ENST00000557302 EBLN1P0CF75 366 aa13.12□□□□□ -0.31
SHMT2-228ENST00000557302 ERGP11308 486 aa13.12□□□□□ -0.31
SHMT2-228ENST00000557302 PVRP15151 417 aa13.12□□□□□ -0.31
SHMT2-228ENST00000557302 ST6GAL1P15907 406 aa13.12□□□□□ -0.31
SHMT2-228ENST00000557302 CD82P27701 267 aa13.12□□□□□ -0.31
SHMT2-228ENST00000557302 OAS2P29728 719 aaKnown RBP13.12□□□□□ -0.31
SHMT2-228ENST00000557302 TUBB4BP68371 445 aa13.12□□□□□ -0.31
SHMT2-228ENST00000557302 ACY1Q03154 408 aa13.12□□□□□ -0.31
SHMT2-228ENST00000557302 TUBB3Q13509 450 aa13.12□□□□□ -0.31
SHMT2-228ENST00000557302 IL11RAQ14626 422 aa13.12□□□□□ -0.31
SHMT2-228ENST00000557302 KCNAB1Q14722 419 aa13.12□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 33 ms