RNA–Protein interactions for RNA: ENST00000557005.1

SYNE2-223, Transcript of spectrin repeat containing nuclear envelope protein 2, human

TSL 2

Gene SYNE2, Length 5,804 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SYNE2-223	ENST00000557005	PRSS51	A0A1B0GVH4	220 aa		4.88	□□□□□ -1.63
SYNE2-223	ENST00000557005	TRIM64C	A6NLI5	447 aa		4.88	□□□□□ -1.63
SYNE2-223	ENST00000557005	DFNA5	O60443	496 aa		4.88	□□□□□ -1.63
SYNE2-223	ENST00000557005	EFCAB14	O75071	495 aa		4.88	□□□□□ -1.63
SYNE2-223	ENST00000557005	GUCY1B2	O75343	617 aa		4.88	□□□□□ -1.63
SYNE2-223	ENST00000557005	USP2	O75604	605 aa	Predicted RBP	4.88	□□□□□ -1.63
SYNE2-223	ENST00000557005	SNX4	O95219	450 aa		4.88	□□□□□ -1.63
SYNE2-223	ENST00000557005	CELF2	O95319	508 aa	Known RBP	4.88	□□□□□ -1.63
SYNE2-223	ENST00000557005	IQCF3	P0C7M6	154 aa		4.88	□□□□□ -1.63
SYNE2-223	ENST00000557005	CYP2A6	P11509	494 aa	Predicted RBP	4.88	□□□□□ -1.63
SYNE2-223	ENST00000557005	CKMT1A	P12532	417 aa		4.88	□□□□□ -1.63
SYNE2-223	ENST00000557005	C4BPB	P20851	252 aa		4.88	□□□□□ -1.63
SYNE2-223	ENST00000557005	OR1E2	P47887	323 aa		4.88	□□□□□ -1.63
SYNE2-223	ENST00000557005	OLR1	P78380	273 aa		4.88	□□□□□ -1.63
SYNE2-223	ENST00000557005	TUBB3	Q13509	450 aa		4.88	□□□□□ -1.63
SYNE2-223	ENST00000557005	APOF	Q13790	326 aa		4.88	□□□□□ -1.63
SYNE2-223	ENST00000557005	SELPLG	Q14242	412 aa		4.88	□□□□□ -1.63
SYNE2-223	ENST00000557005	RUNDC3A	Q59EK9	446 aa		4.88	□□□□□ -1.63
SYNE2-223	ENST00000557005	PAGE3	Q5JUK9	113 aa		4.88	□□□□□ -1.63
SYNE2-223	ENST00000557005	ATAD3C	Q5T2N8	411 aa		4.88	□□□□□ -1.63
SYNE2-223	ENST00000557005	ERICH5	Q6P6B1	374 aa		4.88	□□□□□ -1.63
SYNE2-223	ENST00000557005	TMPRSS11B	Q86T26	416 aa		4.88	□□□□□ -1.63
SYNE2-223	ENST00000557005	ALDH16A1	Q8IZ83	802 aa		4.88	□□□□□ -1.63
SYNE2-223	ENST00000557005	RBFA	Q8N0V3	343 aa		4.88	□□□□□ -1.63
SYNE2-223	ENST00000557005	ABHD11	Q8NFV4	315 aa		4.88	□□□□□ -1.63
SYNE2-223	ENST00000557005	GRPEL2	Q8TAA5	225 aa		4.88	□□□□□ -1.63
SYNE2-223	ENST00000557005	CRELD1	Q96HD1	420 aa		4.88	□□□□□ -1.63
SYNE2-223	ENST00000557005	DERL2	Q9GZP9	239 aa		4.88	□□□□□ -1.63
SYNE2-223	ENST00000557005	ATG10	Q9H0Y0	220 aa		4.88	□□□□□ -1.63
SYNE2-223	ENST00000557005	RNF39	Q9H2S5	420 aa		4.88	□□□□□ -1.63
SYNE2-223	ENST00000557005	PAQR5	Q9NXK6	330 aa	Predicted RBP	4.88	□□□□□ -1.63
SYNE2-223	ENST00000557005	TVP23B	Q9NYZ1	205 aa		4.88	□□□□□ -1.63
SYNE2-223	ENST00000557005	EVL	Q9UI08	416 aa	Predicted RBP	4.88	□□□□□ -1.63
SYNE2-223	ENST00000557005	NCKAP1	Q9Y2A7	1128 aa		4.88	□□□□□ -1.63
SYNE2-223	ENST00000557005	ZCWPW2	A0A1B0GU75	182 aa		4.88	□□□□□ -1.63
SYNE2-223	ENST00000557005	FADS2P1	A8MWK0	482 aa		4.88	□□□□□ -1.63
SYNE2-223	ENST00000557005	FAM25E	A8MYX2	175 aa		4.88	□□□□□ -1.63
SYNE2-223	ENST00000557005	ARVCF	O00192	962 aa		4.88	□□□□□ -1.63
SYNE2-223	ENST00000557005	SEPT4	O43236	478 aa		4.88	□□□□□ -1.63
SYNE2-223	ENST00000557005	IL7	P13232	177 aa		4.88	□□□□□ -1.63
SYNE2-223	ENST00000557005	RHOQ	P17081	205 aa		4.88	□□□□□ -1.63
SYNE2-223	ENST00000557005	ITIH1	P19827	911 aa		4.88	□□□□□ -1.63
SYNE2-223	ENST00000557005	PAICS	P22234	425 aa	Known RBP	4.88	□□□□□ -1.63
SYNE2-223	ENST00000557005	CLK3	P49761	638 aa	Known RBP	4.88	□□□□□ -1.63
SYNE2-223	ENST00000557005	LILRA4	P59901	499 aa		4.88	□□□□□ -1.63
SYNE2-223	ENST00000557005	RPS14	P62263	151 aa	Known RBP	4.88	□□□□□ -1.63
SYNE2-223	ENST00000557005	BNC1	Q01954	994 aa		4.88	□□□□□ -1.63
SYNE2-223	ENST00000557005	HNRNPA0	Q13151	305 aa	Known RBP	4.88	□□□□□ -1.63
SYNE2-223	ENST00000557005	RPA4	Q13156	261 aa		4.88	□□□□□ -1.63
SYNE2-223	ENST00000557005	CRTC2	Q53ET0	693 aa	Predicted RBP	4.88	□□□□□ -1.63
SYNE2-223	ENST00000557005	ZNF789	Q5FWF6	425 aa		4.88	□□□□□ -1.63
SYNE2-223	ENST00000557005	OR2T5	Q6IEZ7	315 aa		4.88	□□□□□ -1.63
SYNE2-223	ENST00000557005	PNCK	Q6P2M8	343 aa		4.88	□□□□□ -1.63
SYNE2-223	ENST00000557005	RAB11FIP1	Q6WKZ4	1283 aa	Predicted RBP	4.88	□□□□□ -1.63
SYNE2-223	ENST00000557005	SPATC1	Q76KD6	591 aa		4.88	□□□□□ -1.63
SYNE2-223	ENST00000557005	C14orf80	Q86SX3	495 aa		4.88	□□□□□ -1.63
SYNE2-223	ENST00000557005	CHERP	Q8IWX8	916 aa	Known RBP	4.88	□□□□□ -1.63
SYNE2-223	ENST00000557005	OR2T29	Q8NH02	315 aa		4.88	□□□□□ -1.63
SYNE2-223	ENST00000557005	KCTD13	Q8WZ19	329 aa		4.88	□□□□□ -1.63
SYNE2-223	ENST00000557005	FCGR1B	Q92637	280 aa		4.88	□□□□□ -1.63
SYNE2-223	ENST00000557005	UFD1	Q92890	307 aa		4.88	□□□□□ -1.63
SYNE2-223	ENST00000557005	DPH2	Q9BQC3	489 aa	Predicted RBP	4.88	□□□□□ -1.63
SYNE2-223	ENST00000557005	ARMC1	Q9NVT9	282 aa		4.88	□□□□□ -1.63
SYNE2-223	ENST00000557005	C1orf109	Q9NX04	203 aa		4.88	□□□□□ -1.63
SYNE2-223	ENST00000557005	GPR83	Q9NYM4	423 aa		4.88	□□□□□ -1.63
SYNE2-223	ENST00000557005	COQ3	Q9NZJ6	369 aa		4.88	□□□□□ -1.63
SYNE2-223	ENST00000557005	TMEM9	Q9P0T7	183 aa		4.88	□□□□□ -1.63
SYNE2-223	ENST00000557005	SPATA7	Q9P0W8	599 aa		4.88	□□□□□ -1.63
SYNE2-223	ENST00000557005	MARCH4	Q9P2E8	410 aa	Predicted RBP	4.88	□□□□□ -1.63
SYNE2-223	ENST00000557005	ZNF69	Q9UC07	566 aa		4.88	□□□□□ -1.63
SYNE2-223	ENST00000557005	STOML2	Q9UJZ1	356 aa		4.88	□□□□□ -1.63
SYNE2-223	ENST00000557005	ZNF451	Q9Y4E5	1061 aa		4.88	□□□□□ -1.63
SYNE2-223	ENST00000557005	SBF2	Q86WG5	1849 aa		4.88	□□□□□ -1.63
SYNE2-223	ENST00000557005	TCRBV3S1	A0A5B6	114 aa		4.87	□□□□□ -1.63
SYNE2-223	ENST00000557005	RBM47	A0AV96	593 aa	Known RBP	4.87	□□□□□ -1.63
SYNE2-223	ENST00000557005	GMFG	O60234	142 aa		4.87	□□□□□ -1.63
SYNE2-223	ENST00000557005	RFPL2	O75678	378 aa		4.87	□□□□□ -1.63
SYNE2-223	ENST00000557005	TBX18	O95935	607 aa		4.87	□□□□□ -1.63
SYNE2-223	ENST00000557005	PDYN	P01213	254 aa		4.87	□□□□□ -1.63
SYNE2-223	ENST00000557005	FUCA1	P04066	466 aa		4.87	□□□□□ -1.63
SYNE2-223	ENST00000557005	OGN	P20774	298 aa	Known RBP	4.87	□□□□□ -1.63
SYNE2-223	ENST00000557005	CAPN3	P20807	821 aa		4.87	□□□□□ -1.63
SYNE2-223	ENST00000557005	CD247	P20963	164 aa		4.87	□□□□□ -1.63
SYNE2-223	ENST00000557005	PTN	P21246	168 aa		4.87	□□□□□ -1.63
SYNE2-223	ENST00000557005	GPX3	P22352	226 aa		4.87	□□□□□ -1.63
SYNE2-223	ENST00000557005	PPP2R1B	P30154	601 aa		4.87	□□□□□ -1.63
SYNE2-223	ENST00000557005	RFC2	P35250	354 aa		4.87	□□□□□ -1.63
SYNE2-223	ENST00000557005	BDKRB1	P46663	353 aa		4.87	□□□□□ -1.63
SYNE2-223	ENST00000557005	SNRPD2	P62316	118 aa	Known RBP	4.87	□□□□□ -1.63
SYNE2-223	ENST00000557005	INCA1	Q0VD86	236 aa		4.87	□□□□□ -1.63
SYNE2-223	ENST00000557005	HSPB3	Q12988	150 aa		4.87	□□□□□ -1.63
SYNE2-223	ENST00000557005	EXOC3L2	Q2M3D2	409 aa		4.87	□□□□□ -1.63
SYNE2-223	ENST00000557005	IQCC	Q4KMZ1	466 aa		4.87	□□□□□ -1.63
SYNE2-223	ENST00000557005	C6orf141	Q5SZD1	244 aa		4.87	□□□□□ -1.63
SYNE2-223	ENST00000557005	LCN8	Q6JVE9	175 aa		4.87	□□□□□ -1.63
SYNE2-223	ENST00000557005	TRNP1	Q6NT89	227 aa		4.87	□□□□□ -1.63
SYNE2-223	ENST00000557005	ASCC1	Q8N9N2	400 aa	Known RBP	4.87	□□□□□ -1.63
SYNE2-223	ENST00000557005	AQP11	Q8NBQ7	271 aa		4.87	□□□□□ -1.63
SYNE2-223	ENST00000557005	C3orf30	Q96M34	536 aa		4.87	□□□□□ -1.63
SYNE2-223	ENST00000557005	INPP5K	Q9BT40	448 aa		4.87	□□□□□ -1.63

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