RNA–Protein interactions for RNA: ENST00000556534.1

SCFD1-221, Transcript of sec1 family domain containing 1, humanhuman

TSL 5

Gene SCFD1, Length 864 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-221ENST00000556534 UGP2Q16851 508 aa4.05□□□□□ -1.76
SCFD1-221ENST00000556534 VWC2Q2TAL6 325 aa4.05□□□□□ -1.76
SCFD1-221ENST00000556534 ZFP69Q49AA0 526 aa4.05□□□□□ -1.76
SCFD1-221ENST00000556534 C9orf152Q5JTZ5 239 aa4.05□□□□□ -1.76
SCFD1-221ENST00000556534 C6orf163Q5TEZ5 329 aa4.05□□□□□ -1.76
SCFD1-221ENST00000556534 NUDT13Q86X67 352 aa4.05□□□□□ -1.76
SCFD1-221ENST00000556534 KRTAP7-1Q8IUC3 87 aa4.05□□□□□ -1.76
SCFD1-221ENST00000556534 ATL1Q8WXF7 558 aa4.05□□□□□ -1.76
SCFD1-221ENST00000556534 DYRK2Q92630 601 aa4.05□□□□□ -1.76
SCFD1-221ENST00000556534 TUBB2BQ9BVA1 445 aa4.05□□□□□ -1.76
SCFD1-221ENST00000556534 GFRA4Q9GZZ7 299 aa4.05□□□□□ -1.76
SCFD1-221ENST00000556534 TAB2Q9NYJ8 693 aa4.05□□□□□ -1.76
SCFD1-221ENST00000556534 SLC24A2Q9UI40 661 aa4.05□□□□□ -1.76
SCFD1-221ENST00000556534 TRIM17Q9Y577 477 aa4.05□□□□□ -1.76
SCFD1-221ENST00000556534 A0A087WW49 117 aa4.04□□□□□ -1.76
SCFD1-221ENST00000556534 MEIOCA2RUB1 952 aa4.04□□□□□ -1.76
SCFD1-221ENST00000556534 SYNDIG1LA6NDD5 238 aa4.04□□□□□ -1.76
SCFD1-221ENST00000556534 ANKRD61A6NGH8 418 aa4.04□□□□□ -1.76
SCFD1-221ENST00000556534 SLCO1B7G3V0H7 640 aa4.04□□□□□ -1.76
SCFD1-221ENST00000556534 ZNF821O75541 412 aaPredicted RBP4.04□□□□□ -1.76
SCFD1-221ENST00000556534 RAF1P04049 648 aa4.04□□□□□ -1.76
SCFD1-221ENST00000556534 HMBSP08397 361 aa4.04□□□□□ -1.76
SCFD1-221ENST00000556534 CYP11B2P19099 503 aa4.04□□□□□ -1.76
SCFD1-221ENST00000556534 NKX2-1P43699 371 aaPredicted RBP4.04□□□□□ -1.76
SCFD1-221ENST00000556534 TAF10Q12962 218 aa4.04□□□□□ -1.76
SCFD1-221ENST00000556534 KCTD2Q14681 263 aa4.04□□□□□ -1.76
SCFD1-221ENST00000556534 RRS1Q15050 365 aaKnown RBP4.04□□□□□ -1.76
SCFD1-221ENST00000556534 ODF4Q2M2E3 257 aa4.04□□□□□ -1.76
SCFD1-221ENST00000556534 LETM2Q2VYF4 491 aa4.04□□□□□ -1.76
SCFD1-221ENST00000556534 UGT3A2Q3SY77 523 aa4.04□□□□□ -1.76
SCFD1-221ENST00000556534 XKR3Q5GH77 459 aa4.04□□□□□ -1.76
SCFD1-221ENST00000556534 ZC2HC1BQ5TFG8 222 aa4.04□□□□□ -1.76
SCFD1-221ENST00000556534 KRTAP5-11Q6L8G4 156 aa4.04□□□□□ -1.76
SCFD1-221ENST00000556534 PWWP2BQ6NUJ5 590 aa4.04□□□□□ -1.76
SCFD1-221ENST00000556534 MFSD12Q6NUT3 480 aa4.04□□□□□ -1.76
SCFD1-221ENST00000556534 BHLHB9Q6PI77 547 aa4.04□□□□□ -1.76
SCFD1-221ENST00000556534 ARHGAP22Q7Z5H3 698 aa4.04□□□□□ -1.76
SCFD1-221ENST00000556534 CENPVQ7Z7K6 275 aaPredicted RBP4.04□□□□□ -1.76
SCFD1-221ENST00000556534 RTN4RL2Q86UN3 420 aa4.04□□□□□ -1.76
SCFD1-221ENST00000556534 ZNF611Q8N823 705 aa4.04□□□□□ -1.76
SCFD1-221ENST00000556534 XXYLT1Q8NBI6 393 aa4.04□□□□□ -1.76
SCFD1-221ENST00000556534 GMPPAQ96IJ6 420 aaPredicted RBP4.04□□□□□ -1.76
SCFD1-221ENST00000556534 ART5Q96L15 291 aa4.04□□□□□ -1.76
SCFD1-221ENST00000556534 FAM20AQ96MK3 541 aa4.04□□□□□ -1.76
SCFD1-221ENST00000556534 ATAD3AQ9NVI7 634 aa4.04□□□□□ -1.76
SCFD1-221ENST00000556534 STK26Q9P289 416 aa4.04□□□□□ -1.76
SCFD1-221ENST00000556534 MRPS28Q9Y2Q9 187 aaKnown RBP4.04□□□□□ -1.76
SCFD1-221ENST00000556534 EDDM13A0A1B0GTR0 161 aa4.03□□□□□ -1.76
SCFD1-221ENST00000556534 NEMP2A6NFY4 417 aa4.03□□□□□ -1.76
SCFD1-221ENST00000556534 UBE2CO00762 179 aa4.03□□□□□ -1.76
SCFD1-221ENST00000556534 P4HA2O15460 535 aa4.03□□□□□ -1.76
SCFD1-221ENST00000556534 KHDRBS3O75525 346 aaKnown RBP4.03□□□□□ -1.76
SCFD1-221ENST00000556534 DFFBO76075 338 aa4.03□□□□□ -1.76
SCFD1-221ENST00000556534 ZFAND5O76080 213 aa4.03□□□□□ -1.76
SCFD1-221ENST00000556534 SLCO2B1O94956 709 aa4.03□□□□□ -1.76
SCFD1-221ENST00000556534 IGHV2-70P01814 119 aa4.03□□□□□ -1.76
SCFD1-221ENST00000556534 ZNF883P0CG24 379 aa4.03□□□□□ -1.76
SCFD1-221ENST00000556534 JAK1P23458 1154 aa4.03□□□□□ -1.76
SCFD1-221ENST00000556534 MC5RP33032 325 aa4.03□□□□□ -1.76
SCFD1-221ENST00000556534 PTGER4P35408 488 aa4.03□□□□□ -1.76
SCFD1-221ENST00000556534 MAPK12P53778 367 aa4.03□□□□□ -1.76
SCFD1-221ENST00000556534 MAZP56270 477 aaKnown RBP4.03□□□□□ -1.76
SCFD1-221ENST00000556534 PPARDQ03181 441 aa4.03□□□□□ -1.76
SCFD1-221ENST00000556534 TMEM187Q14656 261 aa4.03□□□□□ -1.76
SCFD1-221ENST00000556534 TMEM266Q2M3C6 531 aa4.03□□□□□ -1.76
SCFD1-221ENST00000556534 CRY2Q49AN0 593 aa4.03□□□□□ -1.76
SCFD1-221ENST00000556534 SLC25A53Q5H9E4 307 aa4.03□□□□□ -1.76
SCFD1-221ENST00000556534 PSRC1Q6PGN9 363 aaPredicted RBP4.03□□□□□ -1.76
SCFD1-221ENST00000556534 RBPMS2Q6ZRY4 209 aaKnown RBP4.03□□□□□ -1.76
SCFD1-221ENST00000556534 Q6ZSR9 355 aa4.03□□□□□ -1.76
SCFD1-221ENST00000556534 NUP54Q7Z3B4 507 aa4.03□□□□□ -1.76
SCFD1-221ENST00000556534 MMD2Q8IY49 270 aa4.03□□□□□ -1.76
SCFD1-221ENST00000556534 CDK20Q8IZL9 346 aa4.03□□□□□ -1.76
SCFD1-221ENST00000556534 MARVELD2Q8N4S9 558 aa4.03□□□□□ -1.76
SCFD1-221ENST00000556534 TMEM178AQ8NBL3 297 aa4.03□□□□□ -1.76
SCFD1-221ENST00000556534 KCTD6Q8NC69 237 aa4.03□□□□□ -1.76
SCFD1-221ENST00000556534 PGAP3Q96FM1 320 aaPredicted RBP4.03□□□□□ -1.76
SCFD1-221ENST00000556534 MUS81Q96NY9 551 aa4.03□□□□□ -1.76
SCFD1-221ENST00000556534 TXLNGYQ9BZA5 131 aa4.03□□□□□ -1.76
SCFD1-221ENST00000556534 SHARPINQ9H0F6 387 aa4.03□□□□□ -1.76
SCFD1-221ENST00000556534 PIH1D3Q9NQM4 214 aaKnown RBP4.03□□□□□ -1.76
SCFD1-221ENST00000556534 P4HTMQ9NXG6 502 aa4.03□□□□□ -1.76
SCFD1-221ENST00000556534 STUB1Q9UNE7 303 aa4.03□□□□□ -1.76
SCFD1-221ENST00000556534 TMED3Q9Y3Q3 217 aa4.03□□□□□ -1.76
SCFD1-221ENST00000556534 SNED1Q8TER0 1413 aa4.03□□□□□ -1.76
SCFD1-221ENST00000556534 ENO4A6NNW6 628 aa4.02□□□□□ -1.77
SCFD1-221ENST00000556534 TCERG1O14776 1098 aaKnown RBP4.02□□□□□ -1.77
SCFD1-221ENST00000556534 KLF11O14901 512 aa4.02□□□□□ -1.77
SCFD1-221ENST00000556534 TADA2AO75478 443 aa4.02□□□□□ -1.77
SCFD1-221ENST00000556534 CEBPBP17676 345 aa4.02□□□□□ -1.77
SCFD1-221ENST00000556534 CDH3P22223 829 aa4.02□□□□□ -1.77
SCFD1-221ENST00000556534 CAPZA2P47755 286 aa4.02□□□□□ -1.77
SCFD1-221ENST00000556534 PPP5CP53041 499 aa4.02□□□□□ -1.77
SCFD1-221ENST00000556534 CSE1LP55060 971 aaKnown RBP4.02□□□□□ -1.77
SCFD1-221ENST00000556534 SP3Q02447 781 aa4.02□□□□□ -1.77
SCFD1-221ENST00000556534 CALD1Q05682 793 aaKnown RBP4.02□□□□□ -1.77
SCFD1-221ENST00000556534 RALGDSQ12967 914 aa4.02□□□□□ -1.77
SCFD1-221ENST00000556534 ITGA7Q13683 1181 aa4.02□□□□□ -1.77
SCFD1-221ENST00000556534 SQLEQ14534 574 aa4.02□□□□□ -1.77
SCFD1-221ENST00000556534 PTPRCAPQ14761 206 aa4.02□□□□□ -1.77
Retrieved 100 of 20,778 RNA–protein pairs in 46.9 ms