RNA–Protein interactions for RNA: ENST00000556412.4

VIPAS39-208, Transcript of VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog, humanhuman

TSL 2 BASIC

Gene VIPAS39, Length 1,832 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIPAS39-208ENST00000556412 XPR1Q9UBH6 696 aa13.61□□□□□ -0.23
VIPAS39-208ENST00000556412 NOVA2Q9UNW9 492 aaKnown RBP13.61□□□□□ -0.23
VIPAS39-208ENST00000556412 PCDHGA1Q9Y5H4 931 aa13.61□□□□□ -0.23
VIPAS39-208ENST00000556412 TDRD6O60522 2096 aaKnown RBP13.6□□□□□ -0.23
VIPAS39-208ENST00000556412 ISM1B1AKI9 464 aa13.6□□□□□ -0.23
VIPAS39-208ENST00000556412 AGRPO00253 132 aa13.6□□□□□ -0.23
VIPAS39-208ENST00000556412 KERAO60938 352 aa13.6□□□□□ -0.23
VIPAS39-208ENST00000556412 CHRM5P08912 532 aaPredicted RBP13.6□□□□□ -0.23
VIPAS39-208ENST00000556412 CSF2RBP32927 897 aa13.6□□□□□ -0.23
VIPAS39-208ENST00000556412 PNLIPRP1P54315 467 aa13.6□□□□□ -0.23
VIPAS39-208ENST00000556412 AP1S2P56377 157 aa13.6□□□□□ -0.23
VIPAS39-208ENST00000556412 PPP1CAP62136 330 aa13.6□□□□□ -0.23
VIPAS39-208ENST00000556412 E2F1Q01094 437 aa13.6□□□□□ -0.23
VIPAS39-208ENST00000556412 FASTKQ14296 549 aaKnown RBP13.6□□□□□ -0.23
VIPAS39-208ENST00000556412 TGFBIQ15582 683 aa13.6□□□□□ -0.23
VIPAS39-208ENST00000556412 C16orf46Q6P387 395 aa13.6□□□□□ -0.23
VIPAS39-208ENST00000556412 SUSD1Q6UWL2 747 aa13.6□□□□□ -0.23
VIPAS39-208ENST00000556412 LINC01555Q8NAE3 123 aa13.6□□□□□ -0.23
VIPAS39-208ENST00000556412 ZNF480Q8WV37 535 aa13.6□□□□□ -0.23
VIPAS39-208ENST00000556412 GPR78Q96P69 363 aa13.6□□□□□ -0.23
VIPAS39-208ENST00000556412 MENTQ9BUN1 341 aa13.6□□□□□ -0.23
VIPAS39-208ENST00000556412 IQCGQ9H095 443 aaKnown RBP13.6□□□□□ -0.23
VIPAS39-208ENST00000556412 EPB41L1Q9H4G0 881 aa13.6□□□□□ -0.23
VIPAS39-208ENST00000556412 SPHK1Q9NYA1 384 aa13.6□□□□□ -0.23
VIPAS39-208ENST00000556412 STOX2Q9P2F5 926 aaPredicted RBP13.6□□□□□ -0.23
VIPAS39-208ENST00000556412 PIPSLA2A3N6 862 aa13.6□□□□□ -0.23
VIPAS39-208ENST00000556412 FAM221BA6H8Z2 402 aa13.6□□□□□ -0.23
VIPAS39-208ENST00000556412 ZNF839A8K0R7 811 aa13.6□□□□□ -0.23
VIPAS39-208ENST00000556412 UBXN8O00124 270 aa13.6□□□□□ -0.23
VIPAS39-208ENST00000556412 CAPN5O15484 640 aaPredicted RBP13.6□□□□□ -0.23
VIPAS39-208ENST00000556412 GLRA3O75311 464 aa13.6□□□□□ -0.23
VIPAS39-208ENST00000556412 SPAG7O75391 227 aa13.6□□□□□ -0.23
VIPAS39-208ENST00000556412 RASSF9O75901 435 aa13.6□□□□□ -0.23
VIPAS39-208ENST00000556412 CPNE6O95741 557 aa13.6□□□□□ -0.23
VIPAS39-208ENST00000556412 ANXA5P08758 320 aa13.6□□□□□ -0.23
VIPAS39-208ENST00000556412 RBP1P09455 135 aa13.6□□□□□ -0.23
VIPAS39-208ENST00000556412 IMPA1P29218 277 aa13.6□□□□□ -0.23
VIPAS39-208ENST00000556412 KCNC1P48547 511 aa13.6□□□□□ -0.23
VIPAS39-208ENST00000556412 CCT5P48643 541 aa13.6□□□□□ -0.23
VIPAS39-208ENST00000556412 GFERP55789 205 aa13.6□□□□□ -0.23
VIPAS39-208ENST00000556412 FBXO48Q5FWF7 155 aa13.6□□□□□ -0.23
VIPAS39-208ENST00000556412 TECRLQ5HYJ1 363 aa13.6□□□□□ -0.23
VIPAS39-208ENST00000556412 THEMIS2Q5TEJ8 643 aa13.6□□□□□ -0.23
VIPAS39-208ENST00000556412 AGTRAPQ6RW13 159 aa13.6□□□□□ -0.23
VIPAS39-208ENST00000556412 FAM92BQ6ZTR7 304 aa13.6□□□□□ -0.23
VIPAS39-208ENST00000556412 ADGRF3Q8IZF5 1079 aa13.6□□□□□ -0.23
VIPAS39-208ENST00000556412 GOLGA6L1Q8N7Z2 621 aa13.6□□□□□ -0.23
VIPAS39-208ENST00000556412 OR2L8Q8NGY9 312 aa13.6□□□□□ -0.23
VIPAS39-208ENST00000556412 PGM2Q96G03 612 aa13.6□□□□□ -0.23
VIPAS39-208ENST00000556412 ACAT2Q9BWD1 397 aa13.6□□□□□ -0.23
VIPAS39-208ENST00000556412 STMN4Q9H169 189 aaPredicted RBP13.6□□□□□ -0.23
VIPAS39-208ENST00000556412 DLL3Q9NYJ7 618 aa13.6□□□□□ -0.23
VIPAS39-208ENST00000556412 TMEM216Q9P0N5 145 aa13.6□□□□□ -0.23
VIPAS39-208ENST00000556412 TMEM9Q9P0T7 183 aa13.6□□□□□ -0.23
VIPAS39-208ENST00000556412 DCDC2Q9UHG0 476 aa13.6□□□□□ -0.23
VIPAS39-208ENST00000556412 SYCE1LA8MT33 242 aa13.59□□□□□ -0.23
VIPAS39-208ENST00000556412 C2orf74A8MZ97 194 aa13.59□□□□□ -0.23
VIPAS39-208ENST00000556412 D6RAR5 112 aa13.59□□□□□ -0.23
VIPAS39-208ENST00000556412 TK2O00142 265 aa13.59□□□□□ -0.23
VIPAS39-208ENST00000556412 GFAPP14136 432 aa13.59□□□□□ -0.23
VIPAS39-208ENST00000556412 HOXB3P14651 431 aaPredicted RBP13.59□□□□□ -0.23
VIPAS39-208ENST00000556412 HSD17B2P37059 387 aa13.59□□□□□ -0.23
VIPAS39-208ENST00000556412 INSM1Q01101 510 aaPredicted RBP13.59□□□□□ -0.23
VIPAS39-208ENST00000556412 CFHR1Q03591 330 aa13.59□□□□□ -0.23
VIPAS39-208ENST00000556412 N4BP2L1Q5TBK1 243 aaPredicted RBP13.59□□□□□ -0.23
VIPAS39-208ENST00000556412 CDHR3Q6ZTQ4 885 aa13.59□□□□□ -0.23
VIPAS39-208ENST00000556412 PLXDC1Q8IUK5 500 aa13.59□□□□□ -0.23
VIPAS39-208ENST00000556412 CCDC63Q8NA47 563 aa13.59□□□□□ -0.23
VIPAS39-208ENST00000556412 RHEBL1Q8TAI7 183 aa13.59□□□□□ -0.23
VIPAS39-208ENST00000556412 ATL1Q8WXF7 558 aa13.59□□□□□ -0.23
VIPAS39-208ENST00000556412 PYCR2Q96C36 320 aa13.59□□□□□ -0.23
VIPAS39-208ENST00000556412 ZDHHC12Q96GR4 267 aa13.59□□□□□ -0.23
VIPAS39-208ENST00000556412 APOPT1Q96IL0 206 aa13.59□□□□□ -0.23
VIPAS39-208ENST00000556412 ATOH8Q96SQ7 321 aa13.59□□□□□ -0.23
VIPAS39-208ENST00000556412 MRPL46Q9H2W6 279 aaKnown RBP13.59□□□□□ -0.23
VIPAS39-208ENST00000556412 C12orf65Q9H3J6 166 aaKnown RBP13.59□□□□□ -0.23
VIPAS39-208ENST00000556412 VIPAS39Q9H9C1 493 aa13.59□□□□□ -0.23
VIPAS39-208ENST00000556412 ACTR10Q9NZ32 417 aa13.59□□□□□ -0.23
VIPAS39-208ENST00000556412 WWOXQ9NZC7 414 aa13.59□□□□□ -0.23
VIPAS39-208ENST00000556412 A8MU76 341 aa13.58□□□□□ -0.24
VIPAS39-208ENST00000556412 AGPSO00116 658 aa13.58□□□□□ -0.24
VIPAS39-208ENST00000556412 SASH3O75995 380 aa13.58□□□□□ -0.24
VIPAS39-208ENST00000556412 GSTA1P08263 222 aa13.58□□□□□ -0.24
VIPAS39-208ENST00000556412 CREB1P16220 341 aa13.58□□□□□ -0.24
VIPAS39-208ENST00000556412 PSMB5P28074 263 aa13.58□□□□□ -0.24
VIPAS39-208ENST00000556412 RPA3P35244 121 aaPredicted RBP13.58□□□□□ -0.24
VIPAS39-208ENST00000556412 NAE1Q13564 534 aa13.58□□□□□ -0.24
VIPAS39-208ENST00000556412 ARHGAP19Q14CB8 494 aa13.58□□□□□ -0.24
VIPAS39-208ENST00000556412 CYP2A13Q16696 494 aa13.58□□□□□ -0.24
VIPAS39-208ENST00000556412 C18orf21Q32NC0 220 aaPredicted RBP13.58□□□□□ -0.24
VIPAS39-208ENST00000556412 PHF19Q5T6S3 580 aa13.58□□□□□ -0.24
VIPAS39-208ENST00000556412 RBM44Q6ZP01 1051 aaKnown RBP13.58□□□□□ -0.24
VIPAS39-208ENST00000556412 SH2D5Q6ZV89 423 aa13.58□□□□□ -0.24
VIPAS39-208ENST00000556412 TMPRSS9Q7Z410 1059 aa13.58□□□□□ -0.24
VIPAS39-208ENST00000556412 TRIM73Q86UV7 250 aa13.58□□□□□ -0.24
VIPAS39-208ENST00000556412 LCA5Q86VQ0 697 aa13.58□□□□□ -0.24
VIPAS39-208ENST00000556412 WDR48Q8TAF3 677 aa13.58□□□□□ -0.24
VIPAS39-208ENST00000556412 SMPDL3AQ92484 453 aa13.58□□□□□ -0.24
VIPAS39-208ENST00000556412 FBXL8Q96CD0 374 aa13.58□□□□□ -0.24
VIPAS39-208ENST00000556412 MRPL57Q9BQC6 102 aaKnown RBP13.58□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 26.3 ms