RNA–Protein interactions for RNA: ENST00000556353.1

PRPF39-209, Transcript of pre-mRNA processing factor 39, humanhuman

TSL 2

Gene PRPF39, Length 687 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF39-209ENST00000556353 TRIM15Q9C019 465 aa4.5□□□□□ -1.69
PRPF39-209ENST00000556353 SMC4Q9NTJ3 1288 aa4.5□□□□□ -1.69
PRPF39-209ENST00000556353 MTMR6Q9Y217 621 aa4.5□□□□□ -1.69
PRPF39-209ENST00000556353 NIP7Q9Y221 180 aaKnown RBP eCLIP4.5□□□□□ -1.69
PRPF39-209ENST00000556353 RABGAP1Q9Y3P9 1069 aa4.5□□□□□ -1.69
PRPF39-209ENST00000556353 RNF123Q5XPI4 1314 aa4.49□□□□□ -1.69
PRPF39-209ENST00000556353 MAP3K15Q6ZN16 1313 aa4.49□□□□□ -1.69
PRPF39-209ENST00000556353 OTOFQ9HC10 1997 aa4.49□□□□□ -1.69
PRPF39-209ENST00000556353 PLK4O00444 970 aa4.49□□□□□ -1.69
PRPF39-209ENST00000556353 RTN3O95197 1032 aaPredicted RBP4.49□□□□□ -1.69
PRPF39-209ENST00000556353 HMBSP08397 361 aa4.49□□□□□ -1.69
PRPF39-209ENST00000556353 ACTN1P12814 892 aa4.49□□□□□ -1.69
PRPF39-209ENST00000556353 SELLP14151 372 aa4.49□□□□□ -1.69
PRPF39-209ENST00000556353 ZNF10P21506 573 aaPredicted RBP4.49□□□□□ -1.69
PRPF39-209ENST00000556353 KRTAP10-3P60369 221 aa4.49□□□□□ -1.69
PRPF39-209ENST00000556353 MED22Q15528 200 aa4.49□□□□□ -1.69
PRPF39-209ENST00000556353 TAF7Q15545 349 aaPredicted RBP4.49□□□□□ -1.69
PRPF39-209ENST00000556353 TSTQ16762 297 aaKnown RBP4.49□□□□□ -1.69
PRPF39-209ENST00000556353 ZSCAN23Q3MJ62 389 aa4.49□□□□□ -1.69
PRPF39-209ENST00000556353 GTDC1Q4AE62 458 aa4.49□□□□□ -1.69
PRPF39-209ENST00000556353 FAM9BQ8IZU0 186 aa4.49□□□□□ -1.69
PRPF39-209ENST00000556353 NGEFQ8N5V2 710 aa4.49□□□□□ -1.69
PRPF39-209ENST00000556353 RFFLQ8WZ73 363 aa4.49□□□□□ -1.69
PRPF39-209ENST00000556353 TRIM44Q96DX7 344 aaPredicted RBP4.49□□□□□ -1.69
PRPF39-209ENST00000556353 GMPPAQ96IJ6 420 aaPredicted RBP4.49□□□□□ -1.69
PRPF39-209ENST00000556353 CFAP53Q96M91 514 aa4.49□□□□□ -1.69
PRPF39-209ENST00000556353 DENND2DQ9H6A0 471 aaPredicted RBP4.49□□□□□ -1.69
PRPF39-209ENST00000556353 TSPYL4Q9UJ04 414 aa4.49□□□□□ -1.69
PRPF39-209ENST00000556353 GTF2A1LQ9UNN4 478 aa4.49□□□□□ -1.69
PRPF39-209ENST00000556353 TMEM98Q9Y2Y6 226 aa4.49□□□□□ -1.69
PRPF39-209ENST00000556353 PYGO1Q9Y3Y4 419 aa4.49□□□□□ -1.69
PRPF39-209ENST00000556353 ARAP2Q8WZ64 1704 aa4.49□□□□□ -1.69
PRPF39-209ENST00000556353 ABCC4O15439 1325 aa4.48□□□□□ -1.69
PRPF39-209ENST00000556353 PAPPA2Q9BXP8 1791 aa4.48□□□□□ -1.69
PRPF39-209ENST00000556353 COL6A3P12111 3177 aa4.48□□□□□ -1.69
PRPF39-209ENST00000556353 TMEM8BA6NDV4 472 aa4.48□□□□□ -1.69
PRPF39-209ENST00000556353 SLCO1B7G3V0H7 640 aa4.48□□□□□ -1.69
PRPF39-209ENST00000556353 HTATSF1O43719 755 aaKnown RBP4.48□□□□□ -1.69
PRPF39-209ENST00000556353 GCNT3O95395 438 aa4.48□□□□□ -1.69
PRPF39-209ENST00000556353 NADKO95544 446 aaPredicted RBP4.48□□□□□ -1.69
PRPF39-209ENST00000556353 AGR2O95994 175 aa4.48□□□□□ -1.69
PRPF39-209ENST00000556353 H1F0P07305 194 aaKnown RBP4.48□□□□□ -1.69
PRPF39-209ENST00000556353 FAM157CP0CG43 387 aa4.48□□□□□ -1.69
PRPF39-209ENST00000556353 MYL6BP14649 208 aa4.48□□□□□ -1.69
PRPF39-209ENST00000556353 NFKBIAP25963 317 aa4.48□□□□□ -1.69
PRPF39-209ENST00000556353 BMXP51813 675 aa4.48□□□□□ -1.69
PRPF39-209ENST00000556353 THOP1P52888 689 aa4.48□□□□□ -1.69
PRPF39-209ENST00000556353 GAGE2BQ13066 116 aa4.48□□□□□ -1.69
PRPF39-209ENST00000556353 PCGF3Q3KNV8 242 aa4.48□□□□□ -1.69
PRPF39-209ENST00000556353 GAGE2EQ4V326 116 aa4.48□□□□□ -1.69
PRPF39-209ENST00000556353 WDR78Q5VTH9 848 aa4.48□□□□□ -1.69
PRPF39-209ENST00000556353 ARHGEF16Q5VV41 709 aa4.48□□□□□ -1.69
PRPF39-209ENST00000556353 SUSD4Q5VX71 490 aa4.48□□□□□ -1.69
PRPF39-209ENST00000556353 GAGE2AQ6NT46 116 aa4.48□□□□□ -1.69
PRPF39-209ENST00000556353 NCEH1Q6PIU2 408 aa4.48□□□□□ -1.69
PRPF39-209ENST00000556353 CEP97Q8IW35 865 aa4.48□□□□□ -1.69
PRPF39-209ENST00000556353 L3MBTL4Q8NA19 623 aa4.48□□□□□ -1.69
PRPF39-209ENST00000556353 MRGPRDQ8TDS7 321 aa4.48□□□□□ -1.69
PRPF39-209ENST00000556353 ANP32BQ92688 251 aaKnown RBP4.48□□□□□ -1.69
PRPF39-209ENST00000556353 RTP3Q9BQQ7 232 aa4.48□□□□□ -1.69
PRPF39-209ENST00000556353 TRIM51Q9BSJ1 452 aa4.48□□□□□ -1.69
PRPF39-209ENST00000556353 MCRIP2Q9BUT9 160 aaKnown RBP4.48□□□□□ -1.69
PRPF39-209ENST00000556353 CHMP4BQ9H444 224 aaKnown RBP4.48□□□□□ -1.69
PRPF39-209ENST00000556353 ATAD3AQ9NVI7 634 aa4.48□□□□□ -1.69
PRPF39-209ENST00000556353 MIOSQ9NXC5 875 aa4.48□□□□□ -1.69
PRPF39-209ENST00000556353 GAGE2DQ9UEU5 116 aa4.48□□□□□ -1.69
PRPF39-209ENST00000556353 PGAP2Q9UHJ9 254 aa4.48□□□□□ -1.69
PRPF39-209ENST00000556353 CNTNAP1P78357 1384 aa4.48□□□□□ -1.69
PRPF39-209ENST00000556353 MYH13Q9UKX3 1938 aa4.48□□□□□ -1.69
PRPF39-209ENST00000556353 GIMAP1-GIMAP5A0A087WTJ2 511 aa4.47□□□□□ -1.69
PRPF39-209ENST00000556353 OR6C76A6NM76 312 aa4.47□□□□□ -1.69
PRPF39-209ENST00000556353 ERVV-1B6SEH8 477 aa4.47□□□□□ -1.69
PRPF39-209ENST00000556353 H7C423 109 aa4.47□□□□□ -1.69
PRPF39-209ENST00000556353 TMEM63AO94886 807 aa4.47□□□□□ -1.69
PRPF39-209ENST00000556353 CDH2P19022 906 aaPredicted RBP4.47□□□□□ -1.69
PRPF39-209ENST00000556353 CBLP22681 906 aa4.47□□□□□ -1.69
PRPF39-209ENST00000556353 SP100P23497 879 aaPredicted RBP4.47□□□□□ -1.69
PRPF39-209ENST00000556353 PSMA4P25789 261 aaKnown RBP4.47□□□□□ -1.69
PRPF39-209ENST00000556353 WNT5AP41221 380 aa4.47□□□□□ -1.69
PRPF39-209ENST00000556353 RPS18P62269 152 aaKnown RBP4.47□□□□□ -1.69
PRPF39-209ENST00000556353 ADAMTSL4-AS1Q5T5F5 129 aa4.47□□□□□ -1.69
PRPF39-209ENST00000556353 INTS11Q5TA45 600 aaKnown RBP4.47□□□□□ -1.69
PRPF39-209ENST00000556353 KRTAP5-1Q6L8H4 278 aa4.47□□□□□ -1.69
PRPF39-209ENST00000556353 KLC3Q6P597 504 aa4.47□□□□□ -1.69
PRPF39-209ENST00000556353 DENND5BQ6ZUT9 1274 aa4.47□□□□□ -1.69
PRPF39-209ENST00000556353 GALNT13Q8IUC8 556 aa4.47□□□□□ -1.69
PRPF39-209ENST00000556353 ZNF440Q8IYI8 595 aa4.47□□□□□ -1.69
PRPF39-209ENST00000556353 HJURPQ8NCD3 748 aaPredicted RBP4.47□□□□□ -1.69
PRPF39-209ENST00000556353 OR2T6Q8NHC8 308 aa4.47□□□□□ -1.69
PRPF39-209ENST00000556353 MOAP1Q96BY2 351 aa4.47□□□□□ -1.69
PRPF39-209ENST00000556353 GIMAP5Q96F15 307 aa4.47□□□□□ -1.69
PRPF39-209ENST00000556353 NCAPGQ9BPX3 1015 aa4.47□□□□□ -1.69
PRPF39-209ENST00000556353 ZNF71Q9NQZ8 489 aaPredicted RBP4.47□□□□□ -1.69
PRPF39-209ENST00000556353 OLFML3Q9NRN5 406 aa4.47□□□□□ -1.69
PRPF39-209ENST00000556353 SETD4Q9NVD3 440 aa4.47□□□□□ -1.69
PRPF39-209ENST00000556353 PAK5Q9P286 719 aa4.47□□□□□ -1.69
PRPF39-209ENST00000556353 NUDCQ9Y266 331 aa4.47□□□□□ -1.69
PRPF39-209ENST00000556353 CUL9Q8IWT3 2517 aa4.47□□□□□ -1.69
PRPF39-209ENST00000556353 EYSQ5T1H1 3165 aa4.46□□□□□ -1.7
PRPF39-209ENST00000556353 TRIOBPQ9H2D6 2365 aa4.46□□□□□ -1.7
Retrieved 100 of 20,778 RNA–protein pairs in 27 ms