RNA–Protein interactions for RNA: ENST00000552783.5

LIMA1-214, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 3,612 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-214ENST00000552783 TRAF3Q13114 568 aa4.74□□□□□ -1.65
LIMA1-214ENST00000552783 GTF2H3Q13889 308 aa4.74□□□□□ -1.65
LIMA1-214ENST00000552783 CEP78Q5JTW2 689 aa4.74□□□□□ -1.65
LIMA1-214ENST00000552783 PIK3R6Q5UE93 754 aa4.74□□□□□ -1.65
LIMA1-214ENST00000552783 AGAP6Q5VW22 663 aa4.74□□□□□ -1.65
LIMA1-214ENST00000552783 SUSD1Q6UWL2 747 aa4.74□□□□□ -1.65
LIMA1-214ENST00000552783 NEK10Q6ZWH5 1172 aa4.74□□□□□ -1.65
LIMA1-214ENST00000552783 LRRTM3Q86VH5 581 aa4.74□□□□□ -1.65
LIMA1-214ENST00000552783 NLRP8Q86W28 1048 aa4.74□□□□□ -1.65
LIMA1-214ENST00000552783 CFAP52Q8N1V2 620 aa4.74□□□□□ -1.65
LIMA1-214ENST00000552783 ATAD1Q8NBU5 361 aa4.74□□□□□ -1.65
LIMA1-214ENST00000552783 OR5K1Q8NHB7 308 aa4.74□□□□□ -1.65
LIMA1-214ENST00000552783 ARRDC2Q8TBH0 407 aa4.74□□□□□ -1.65
LIMA1-214ENST00000552783 SP7Q8TDD2 431 aaPredicted RBP4.74□□□□□ -1.65
LIMA1-214ENST00000552783 AGAP4Q96P64 663 aa4.74□□□□□ -1.65
LIMA1-214ENST00000552783 KCNS3Q9BQ31 491 aa4.74□□□□□ -1.65
LIMA1-214ENST00000552783 RTP3Q9BQQ7 232 aa4.74□□□□□ -1.65
LIMA1-214ENST00000552783 AARSD1Q9BTE6 412 aaKnown RBP4.74□□□□□ -1.65
LIMA1-214ENST00000552783 KATNAL1Q9BW62 490 aa4.74□□□□□ -1.65
LIMA1-214ENST00000552783 PRKD2Q9BZL6 878 aa4.74□□□□□ -1.65
LIMA1-214ENST00000552783 SLC25A51Q9H1U9 297 aa4.74□□□□□ -1.65
LIMA1-214ENST00000552783 KAT8Q9H7Z6 458 aaKnown RBP4.74□□□□□ -1.65
LIMA1-214ENST00000552783 NMUR1Q9HB89 426 aa4.74□□□□□ -1.65
LIMA1-214ENST00000552783 TRIM39Q9HCM9 518 aa4.74□□□□□ -1.65
LIMA1-214ENST00000552783 DDX28Q9NUL7 540 aaKnown RBP4.74□□□□□ -1.65
LIMA1-214ENST00000552783 DCAF13Q9NV06 445 aaKnown RBP4.74□□□□□ -1.65
LIMA1-214ENST00000552783 MUTYHQ9UIF7 546 aa4.74□□□□□ -1.65
LIMA1-214ENST00000552783 KCNH4Q9UQ05 1017 aa4.74□□□□□ -1.65
LIMA1-214ENST00000552783 PCDHGB6Q9Y5F9 930 aa4.74□□□□□ -1.65
LIMA1-214ENST00000552783 HS3ST4Q9Y661 456 aa4.74□□□□□ -1.65
LIMA1-214ENST00000552783 MYO7AQ13402 2215 aa4.74□□□□□ -1.65
LIMA1-214ENST00000552783 ELOVL7A1L3X0 281 aa4.74□□□□□ -1.65
LIMA1-214ENST00000552783 E9PAM4 449 aa4.74□□□□□ -1.65
LIMA1-214ENST00000552783 OR7A17O14581 309 aa4.74□□□□□ -1.65
LIMA1-214ENST00000552783 HAT1O14929 419 aa4.74□□□□□ -1.65
LIMA1-214ENST00000552783 TFECO14948 347 aaPredicted RBP4.74□□□□□ -1.65
LIMA1-214ENST00000552783 PSMD3O43242 534 aa4.74□□□□□ -1.65
LIMA1-214ENST00000552783 RGS10O43665 173 aa4.74□□□□□ -1.65
LIMA1-214ENST00000552783 RHOBTB1O94844 696 aa4.74□□□□□ -1.65
LIMA1-214ENST00000552783 GLP2RO95838 553 aa4.74□□□□□ -1.65
LIMA1-214ENST00000552783 UROSP10746 265 aa4.74□□□□□ -1.65
LIMA1-214ENST00000552783 RFX2P48378 723 aa4.74□□□□□ -1.65
LIMA1-214ENST00000552783 SERPINB10P48595 397 aa4.74□□□□□ -1.65
LIMA1-214ENST00000552783 SUOXP51687 545 aa4.74□□□□□ -1.65
LIMA1-214ENST00000552783 CRYBB1P53674 252 aaPredicted RBP4.74□□□□□ -1.65
LIMA1-214ENST00000552783 OR2B6P58173 313 aa4.74□□□□□ -1.65
LIMA1-214ENST00000552783 RPL38P63173 70 aaKnown RBP4.74□□□□□ -1.65
LIMA1-214ENST00000552783 VLDLRP98155 873 aa4.74□□□□□ -1.65
LIMA1-214ENST00000552783 TWF1Q12792 350 aa4.74□□□□□ -1.65
LIMA1-214ENST00000552783 MAD2L1BPQ15013 274 aaPredicted RBP4.74□□□□□ -1.65
LIMA1-214ENST00000552783 NR6A1Q15406 480 aa4.74□□□□□ -1.65
LIMA1-214ENST00000552783 NDUFA5Q16718 116 aa4.74□□□□□ -1.65
LIMA1-214ENST00000552783 LRRC26Q2I0M4 334 aa4.74□□□□□ -1.65
LIMA1-214ENST00000552783 SGO1Q5FBB7 561 aa4.74□□□□□ -1.65
LIMA1-214ENST00000552783 BRMS1LQ5PSV4 323 aa4.74□□□□□ -1.65
LIMA1-214ENST00000552783 ZNF648Q5T619 568 aaPredicted RBP4.74□□□□□ -1.65
LIMA1-214ENST00000552783 SMYD5Q6GMV2 418 aa4.74□□□□□ -1.65
LIMA1-214ENST00000552783 CAPN13Q6MZZ7 669 aaPredicted RBP4.74□□□□□ -1.65
LIMA1-214ENST00000552783 GPRIN3Q6ZVF9 776 aa4.74□□□□□ -1.65
LIMA1-214ENST00000552783 PRSS48Q7RTY5 328 aa4.74□□□□□ -1.65
LIMA1-214ENST00000552783 CCDC117Q8IWD4 279 aaPredicted RBP4.74□□□□□ -1.65
LIMA1-214ENST00000552783 ENTHD1Q8IYW4 607 aa4.74□□□□□ -1.65
LIMA1-214ENST00000552783 EID3Q8N140 333 aa4.74□□□□□ -1.65
LIMA1-214ENST00000552783 CACTIN-AS1Q8N1I8 211 aa4.74□□□□□ -1.65
LIMA1-214ENST00000552783 CYP4Z2PQ8N1L4 340 aa4.74□□□□□ -1.65
LIMA1-214ENST00000552783 TOP6BLQ8N6T0 577 aa4.74□□□□□ -1.65
LIMA1-214ENST00000552783 ASCC1Q8N9N2 400 aaKnown RBP4.74□□□□□ -1.65
LIMA1-214ENST00000552783 RHEBL1Q8TAI7 183 aa4.74□□□□□ -1.65
LIMA1-214ENST00000552783 STAG3L4Q8TBR4 150 aa4.74□□□□□ -1.65
LIMA1-214ENST00000552783 METTL6Q8TCB7 284 aa4.74□□□□□ -1.65
LIMA1-214ENST00000552783 TSPEARQ8WU66 669 aa4.74□□□□□ -1.65
LIMA1-214ENST00000552783 SLC13A3Q8WWT9 602 aa4.74□□□□□ -1.65
LIMA1-214ENST00000552783 MTFMTQ96DP5 389 aaKnown RBP4.74□□□□□ -1.65
LIMA1-214ENST00000552783 RDH12Q96NR8 316 aa4.74□□□□□ -1.65
LIMA1-214ENST00000552783 MMP28Q9H239 520 aa4.74□□□□□ -1.65
LIMA1-214ENST00000552783 TFB2MQ9H5Q4 396 aaKnown RBP4.74□□□□□ -1.65
LIMA1-214ENST00000552783 MIOSQ9NXC5 875 aa4.74□□□□□ -1.65
LIMA1-214ENST00000552783 ZIM2Q9NZV7 527 aa4.74□□□□□ -1.65
LIMA1-214ENST00000552783 DERAQ9Y315 318 aa4.74□□□□□ -1.65
LIMA1-214ENST00000552783 CCL27Q9Y4X3 112 aa4.74□□□□□ -1.65
LIMA1-214ENST00000552783 SNX8Q9Y5X2 465 aa4.74□□□□□ -1.65
LIMA1-214ENST00000552783 WDR90Q96KV7 1748 aa4.74□□□□□ -1.65
LIMA1-214ENST00000552783 NT5C1B-RDH14C9J2C7 533 aa4.74□□□□□ -1.65
LIMA1-214ENST00000552783 PER2O15055 1255 aa4.74□□□□□ -1.65
LIMA1-214ENST00000552783 ZNF682O95780 498 aa4.74□□□□□ -1.65
LIMA1-214ENST00000552783 IGLV3-25P01717 112 aa4.74□□□□□ -1.65
LIMA1-214ENST00000552783 ABCB1P08183 1280 aaPredicted RBP4.74□□□□□ -1.65
LIMA1-214ENST00000552783 SLC2A4P14672 509 aa4.74□□□□□ -1.65
LIMA1-214ENST00000552783 EFNA1P20827 205 aaPredicted RBP4.74□□□□□ -1.65
LIMA1-214ENST00000552783 OR1E1P30953 314 aa4.74□□□□□ -1.65
LIMA1-214ENST00000552783 PBX3P40426 434 aa4.74□□□□□ -1.65
LIMA1-214ENST00000552783 GZMMP51124 257 aa4.74□□□□□ -1.65
LIMA1-214ENST00000552783 DGKEP52429 567 aa4.74□□□□□ -1.65
LIMA1-214ENST00000552783 AIF1P55008 147 aa4.74□□□□□ -1.65
LIMA1-214ENST00000552783 ZNF181Q2M3W8 571 aa4.74□□□□□ -1.65
LIMA1-214ENST00000552783 SPATS1Q496A3 300 aa4.74□□□□□ -1.65
LIMA1-214ENST00000552783 SPOUT1Q5T280 376 aaKnown RBP4.74□□□□□ -1.65
LIMA1-214ENST00000552783 AFMIDQ63HM1 303 aa4.74□□□□□ -1.65
LIMA1-214ENST00000552783 KDM4DQ6B0I6 523 aa4.74□□□□□ -1.65
LIMA1-214ENST00000552783 PSAPL1Q6NUJ1 521 aa4.74□□□□□ -1.65
Retrieved 100 of 20,778 RNA–protein pairs in 10.8 ms