RNA–Protein interactions for RNA: ENST00000549578.5

VPS29-206, Transcript of VPS29, retromer complex component, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS29, Length 1,523 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-206ENST00000549578 OOSP2Q86WS3 158 aa20.53■□□□□ 0.88
VPS29-206ENST00000549578 ADGRF3Q8IZF5 1079 aa20.53■□□□□ 0.88
VPS29-206ENST00000549578 RAB42Q8N4Z0 105 aa20.53■□□□□ 0.88
VPS29-206ENST00000549578 PPFIBP2Q8ND30 876 aa20.53■□□□□ 0.88
VPS29-206ENST00000549578 ZNF480Q8WV37 535 aa20.53■□□□□ 0.88
VPS29-206ENST00000549578 NCSTNQ92542 709 aa20.53■□□□□ 0.88
VPS29-206ENST00000549578 CCDC138Q96M89 665 aa20.53■□□□□ 0.88
VPS29-206ENST00000549578 RAB11FIP5Q9BXF6 653 aa20.53■□□□□ 0.88
VPS29-206ENST00000549578 ZMYND15Q9H091 742 aa20.53■□□□□ 0.88
VPS29-206ENST00000549578 ABCG4Q9H172 646 aa20.53■□□□□ 0.88
VPS29-206ENST00000549578 HRASLS2Q9NWW9 162 aa20.53■□□□□ 0.88
VPS29-206ENST00000549578 TMEM216Q9P0N5 145 aa20.53■□□□□ 0.88
VPS29-206ENST00000549578 STOX2Q9P2F5 926 aaPredicted RBP20.53■□□□□ 0.88
VPS29-206ENST00000549578 XPR1Q9UBH6 696 aa20.53■□□□□ 0.88
VPS29-206ENST00000549578 LNPEPQ9UIQ6 1025 aa20.53■□□□□ 0.88
VPS29-206ENST00000549578 PCDHGA1Q9Y5H4 931 aa20.53■□□□□ 0.88
VPS29-206ENST00000549578 FAM221BA6H8Z2 402 aa20.53■□□□□ 0.88
VPS29-206ENST00000549578 OR5K3A6NET4 321 aa20.53■□□□□ 0.88
VPS29-206ENST00000549578 MAP2K7O14733 419 aa20.53■□□□□ 0.88
VPS29-206ENST00000549578 OPA1O60313 960 aa20.53■□□□□ 0.88
VPS29-206ENST00000549578 ERGP11308 486 aa20.53■□□□□ 0.88
VPS29-206ENST00000549578 KCNA4P22459 653 aa20.53■□□□□ 0.88
VPS29-206ENST00000549578 AP1S2P56377 157 aa20.53■□□□□ 0.88
VPS29-206ENST00000549578 PPP1CAP62136 330 aa20.53■□□□□ 0.88
VPS29-206ENST00000549578 CYP2A13Q16696 494 aa20.53■□□□□ 0.88
VPS29-206ENST00000549578 TNFAIP8L3Q5GJ75 292 aa20.53■□□□□ 0.88
VPS29-206ENST00000549578 ANKS6Q68DC2 871 aa20.53■□□□□ 0.88
VPS29-206ENST00000549578 C16orf46Q6P387 395 aa20.53■□□□□ 0.88
VPS29-206ENST00000549578 OR2L8Q8NGY9 312 aa20.53■□□□□ 0.88
VPS29-206ENST00000549578 RHEBL1Q8TAI7 183 aa20.53■□□□□ 0.88
VPS29-206ENST00000549578 EGFL8Q99944 293 aa20.53■□□□□ 0.88
VPS29-206ENST00000549578 NUDT22Q9BRQ3 303 aa20.53■□□□□ 0.88
VPS29-206ENST00000549578 EPB41L1Q9H4G0 881 aa20.53■□□□□ 0.88
VPS29-206ENST00000549578 TMBIM4Q9HC24 238 aa20.53■□□□□ 0.88
VPS29-206ENST00000549578 SPHK1Q9NYA1 384 aa20.53■□□□□ 0.88
VPS29-206ENST00000549578 OR6C2Q9NZP2 312 aa20.53■□□□□ 0.88
VPS29-206ENST00000549578 SUPT3HB4E1H0 165 aa20.52■□□□□ 0.87
VPS29-206ENST00000549578 UBXN8O00124 270 aa20.52■□□□□ 0.87
VPS29-206ENST00000549578 TK2O00142 265 aa20.52■□□□□ 0.87
VPS29-206ENST00000549578 COPEO14579 308 aa20.52■□□□□ 0.87
VPS29-206ENST00000549578 GLRA3O75311 464 aa20.52■□□□□ 0.87
VPS29-206ENST00000549578 SUPT3HO75486 399 aa20.52■□□□□ 0.87
VPS29-206ENST00000549578 GSTA1P08263 222 aa20.52■□□□□ 0.87
VPS29-206ENST00000549578 CHRM5P08912 532 aaPredicted RBP20.52■□□□□ 0.87
VPS29-206ENST00000549578 KPNA2P52292 529 aaKnown RBP20.52■□□□□ 0.87
VPS29-206ENST00000549578 PNLIPRP1P54315 467 aa20.52■□□□□ 0.87
VPS29-206ENST00000549578 KLHL35Q6PF15 583 aa20.52■□□□□ 0.87
VPS29-206ENST00000549578 DHRS13Q6UX07 377 aa20.52■□□□□ 0.87
VPS29-206ENST00000549578 EXOC3L1Q86VI1 746 aa20.52■□□□□ 0.87
VPS29-206ENST00000549578 LCA5Q86VQ0 697 aa20.52■□□□□ 0.87
VPS29-206ENST00000549578 SYTL1Q8IYJ3 562 aa20.52■□□□□ 0.87
VPS29-206ENST00000549578 GFM1Q96RP9 751 aaKnown RBP20.52■□□□□ 0.87
VPS29-206ENST00000549578 SMC6Q96SB8 1091 aa20.52■□□□□ 0.87
VPS29-206ENST00000549578 ATG10Q9H0Y0 220 aa20.52■□□□□ 0.87
VPS29-206ENST00000549578 DLL3Q9NYJ7 618 aa20.52■□□□□ 0.87
VPS29-206ENST00000549578 CPSF2Q9P2I0 782 aaKnown RBP20.52■□□□□ 0.87
VPS29-206ENST00000549578 DCDC2Q9UHG0 476 aa20.52■□□□□ 0.87
VPS29-206ENST00000549578 GSAPA4D1B5 854 aa20.51■□□□□ 0.87
VPS29-206ENST00000549578 NTN3O00634 580 aaPredicted RBP20.51■□□□□ 0.87
VPS29-206ENST00000549578 SPAG7O75391 227 aa20.51■□□□□ 0.87
VPS29-206ENST00000549578 ANXA5P08758 320 aa20.51■□□□□ 0.87
VPS29-206ENST00000549578 RBP1P09455 135 aa20.51■□□□□ 0.87
VPS29-206ENST00000549578 CCT5P48643 541 aa20.51■□□□□ 0.87
VPS29-206ENST00000549578 GFERP55789 205 aa20.51■□□□□ 0.87
VPS29-206ENST00000549578 CDKL1Q00532 357 aa20.51■□□□□ 0.87
VPS29-206ENST00000549578 TSTA3Q13630 321 aaPredicted RBP20.51■□□□□ 0.87
VPS29-206ENST00000549578 ARHGAP19Q14CB8 494 aa20.51■□□□□ 0.87
VPS29-206ENST00000549578 ZXDCQ2QGD7 858 aaPredicted RBP20.51■□□□□ 0.87
VPS29-206ENST00000549578 N4BP2L1Q5TBK1 243 aaPredicted RBP20.51■□□□□ 0.87
VPS29-206ENST00000549578 AGTRAPQ6RW13 159 aa20.51■□□□□ 0.87
VPS29-206ENST00000549578 TMPRSS9Q7Z410 1059 aa20.51■□□□□ 0.87
VPS29-206ENST00000549578 BANPQ8N9N5 519 aa20.51■□□□□ 0.87
VPS29-206ENST00000549578 FBXL8Q96CD0 374 aa20.51■□□□□ 0.87
VPS29-206ENST00000549578 APOPT1Q96IL0 206 aa20.51■□□□□ 0.87
VPS29-206ENST00000549578 MRPL46Q9H2W6 279 aaKnown RBP20.51■□□□□ 0.87
VPS29-206ENST00000549578 C12orf65Q9H3J6 166 aaKnown RBP20.51■□□□□ 0.87
VPS29-206ENST00000549578 CD274Q9NZQ7 290 aa20.51■□□□□ 0.87
VPS29-206ENST00000549578 TMEM9Q9P0T7 183 aa20.51■□□□□ 0.87
VPS29-206ENST00000549578 SENP1Q9P0U3 644 aa20.51■□□□□ 0.87
VPS29-206ENST00000549578 APOBEC2Q9Y235 224 aaKnown RBP20.51■□□□□ 0.87
VPS29-206ENST00000549578 PIPSLA2A3N6 862 aa20.5■□□□□ 0.87
VPS29-206ENST00000549578 E7ENX8 843 aa20.5■□□□□ 0.87
VPS29-206ENST00000549578 CAPN5O15484 640 aaPredicted RBP20.5■□□□□ 0.87
VPS29-206ENST00000549578 CPNE6O95741 557 aa20.5■□□□□ 0.87
VPS29-206ENST00000549578 MTHFD2P13995 350 aa20.5■□□□□ 0.87
VPS29-206ENST00000549578 HOXB3P14651 431 aaPredicted RBP20.5■□□□□ 0.87
VPS29-206ENST00000549578 MPSTP25325 297 aa20.5■□□□□ 0.87
VPS29-206ENST00000549578 PEBP1P30086 187 aaKnown RBP20.5■□□□□ 0.87
VPS29-206ENST00000549578 CRHR1P34998 444 aa20.5■□□□□ 0.87
VPS29-206ENST00000549578 HSD17B2P37059 387 aa20.5■□□□□ 0.87
VPS29-206ENST00000549578 CLDN6P56747 220 aa20.5■□□□□ 0.87
VPS29-206ENST00000549578 E2F1Q01094 437 aa20.5■□□□□ 0.87
VPS29-206ENST00000549578 INSM1Q01101 510 aaPredicted RBP20.5■□□□□ 0.87
VPS29-206ENST00000549578 TAP2Q03519 686 aa20.5■□□□□ 0.87
VPS29-206ENST00000549578 PRKAA1Q13131 559 aa20.5■□□□□ 0.87
VPS29-206ENST00000549578 SPIDRQ14159 915 aa20.5■□□□□ 0.87
VPS29-206ENST00000549578 C18orf21Q32NC0 220 aaPredicted RBP20.5■□□□□ 0.87
VPS29-206ENST00000549578 FBXO48Q5FWF7 155 aa20.5■□□□□ 0.87
VPS29-206ENST00000549578 ARMC6Q6NXE6 501 aa20.5■□□□□ 0.87
VPS29-206ENST00000549578 IRGCQ6NXR0 463 aa20.5■□□□□ 0.87
Retrieved 100 of 20,778 RNA–protein pairs in 57.9 ms