RNA–Protein interactions for RNA: ENST00000549414.6

CUX1-213, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,452 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-213ENST00000549414 SOX17Q9H6I2 414 aaPredicted RBP15.91■□□□□ 0.14
CUX1-213ENST00000549414 KRCC1Q9NPI7 259 aaPredicted RBP15.91■□□□□ 0.14
CUX1-213ENST00000549414 IL36AQ9UHA7 158 aa15.91■□□□□ 0.14
CUX1-213ENST00000549414 CLIC1O00299 241 aa15.91■□□□□ 0.14
CUX1-213ENST00000549414 SEC24AO95486 1093 aa15.91■□□□□ 0.14
CUX1-213ENST00000549414 NADKO95544 446 aaPredicted RBP15.91■□□□□ 0.14
CUX1-213ENST00000549414 TSPAN19P0C672 248 aa15.91■□□□□ 0.14
CUX1-213ENST00000549414 CNPY1Q3B7I2 92 aa15.91■□□□□ 0.14
CUX1-213ENST00000549414 SPANXN2Q5MJ10 180 aa15.91■□□□□ 0.14
CUX1-213ENST00000549414 GPR153Q6NV75 609 aa15.91■□□□□ 0.14
CUX1-213ENST00000549414 PIANPQ8IYJ0 282 aa15.91■□□□□ 0.14
CUX1-213ENST00000549414 PHF12Q96QT6 1004 aa15.91■□□□□ 0.14
CUX1-213ENST00000549414 HMG20AQ9NP66 347 aa15.91■□□□□ 0.14
CUX1-213ENST00000549414 FBXW2Q9UKT8 454 aa15.91■□□□□ 0.14
CUX1-213ENST00000549414 PAIP2BQ9ULR5 123 aaKnown RBP15.91■□□□□ 0.14
CUX1-213ENST00000549414 SLC9A8Q9Y2E8 581 aa15.91■□□□□ 0.14
CUX1-213ENST00000549414 USP3Q9Y6I4 520 aa15.91■□□□□ 0.14
CUX1-213ENST00000549414 SERPINB7O75635 380 aa15.91■□□□□ 0.14
CUX1-213ENST00000549414 MED26O95402 600 aa15.91■□□□□ 0.14
CUX1-213ENST00000549414 NUDT14O95848 222 aa15.91■□□□□ 0.14
CUX1-213ENST00000549414 IDSP22304 550 aa15.91■□□□□ 0.14
CUX1-213ENST00000549414 SLC6A4P31645 630 aa15.91■□□□□ 0.14
CUX1-213ENST00000549414 FEN1P39748 380 aaKnown RBP15.91■□□□□ 0.14
CUX1-213ENST00000549414 ETV3P41162 512 aa15.91■□□□□ 0.14
CUX1-213ENST00000549414 BLVRAP53004 296 aa15.91■□□□□ 0.14
CUX1-213ENST00000549414 GCNT6Q5T4J0 391 aa15.91■□□□□ 0.14
CUX1-213ENST00000549414 AMZ2Q86W34 360 aa15.91■□□□□ 0.14
CUX1-213ENST00000549414 SLC43A3Q8NBI5 491 aa15.91■□□□□ 0.14
CUX1-213ENST00000549414 TRPV3Q8NET8 790 aa15.91■□□□□ 0.14
CUX1-213ENST00000549414 ABCB10Q9NRK6 738 aa15.91■□□□□ 0.14
CUX1-213ENST00000549414 SLC27A6Q9Y2P4 619 aa15.91■□□□□ 0.14
CUX1-213ENST00000549414 NME7Q9Y5B8 376 aa15.91■□□□□ 0.14
CUX1-213ENST00000549414 PRKACGP22612 351 aa15.9■□□□□ 0.14
CUX1-213ENST00000549414 RGRP47804 291 aa15.9■□□□□ 0.14
CUX1-213ENST00000549414 ERVK-21P61565 698 aa15.9■□□□□ 0.14
CUX1-213ENST00000549414 NR1D2Q14995 579 aa15.9■□□□□ 0.14
CUX1-213ENST00000549414 ARMC4Q5T2S8 1044 aa15.9■□□□□ 0.14
CUX1-213ENST00000549414 ERICH5Q6P6B1 374 aa15.9■□□□□ 0.14
CUX1-213ENST00000549414 BRAT1Q6PJG6 821 aa15.9■□□□□ 0.14
CUX1-213ENST00000549414 HERVK_113Q902F9 699 aa15.9■□□□□ 0.14
CUX1-213ENST00000549414 TMBIM1Q969X1 311 aa15.9■□□□□ 0.14
CUX1-213ENST00000549414 IGSF5Q9NSI5 407 aa15.9■□□□□ 0.14
CUX1-213ENST00000549414 CLN6Q9NWW5 311 aa15.9■□□□□ 0.14
CUX1-213ENST00000549414 ACTR3BQ9P1U1 418 aa15.9■□□□□ 0.14
CUX1-213ENST00000549414 ADAMTSL1Q8N6G6 1762 aa15.9■□□□□ 0.14
CUX1-213ENST00000549414 PHIPQ8WWQ0 1821 aa15.9■□□□□ 0.14
CUX1-213ENST00000549414 STX16O14662 325 aa15.9■□□□□ 0.14
CUX1-213ENST00000549414 LEFTY1O75610 366 aa15.9■□□□□ 0.14
CUX1-213ENST00000549414 JUNP05412 331 aaKnown RBP15.9■□□□□ 0.14
CUX1-213ENST00000549414 CHRM1P11229 460 aaPredicted RBP15.9■□□□□ 0.14
CUX1-213ENST00000549414 MAGP20916 626 aa15.9■□□□□ 0.14
CUX1-213ENST00000549414 FDXRP22570 491 aa15.9■□□□□ 0.14
CUX1-213ENST00000549414 PTCHD4Q6ZW05 846 aa15.9■□□□□ 0.14
CUX1-213ENST00000549414 OLIG1Q8TAK6 271 aa15.9■□□□□ 0.14
CUX1-213ENST00000549414 BIRC7Q96CA5 298 aa15.9■□□□□ 0.14
CUX1-213ENST00000549414 C12orf66Q96MD2 445 aa15.9■□□□□ 0.14
CUX1-213ENST00000549414 MTG2Q9H4K7 406 aa15.9■□□□□ 0.14
CUX1-213ENST00000549414 TMEM30AQ9NV96 361 aa15.9■□□□□ 0.14
CUX1-213ENST00000549414 ZNF232Q9UNY5 417 aa15.9■□□□□ 0.14
CUX1-213ENST00000549414 POP7O75817 140 aaKnown RBP15.9■□□□□ 0.14
CUX1-213ENST00000549414 IFNA16P05015 189 aa15.9■□□□□ 0.14
CUX1-213ENST00000549414 ADH5P11766 374 aa15.9■□□□□ 0.14
CUX1-213ENST00000549414 GM2AP17900 193 aa15.9■□□□□ 0.14
CUX1-213ENST00000549414 GDI1P31150 447 aa15.9■□□□□ 0.14
CUX1-213ENST00000549414 CAPZA2P47755 286 aa15.9■□□□□ 0.14
CUX1-213ENST00000549414 DGKEP52429 567 aa15.9■□□□□ 0.14
CUX1-213ENST00000549414 UGT2B15P54855 530 aa15.9■□□□□ 0.14
CUX1-213ENST00000549414 MEF2AQ02078 507 aaPredicted RBP15.9■□□□□ 0.14
CUX1-213ENST00000549414 SRSF11Q05519 484 aaKnown RBP15.9■□□□□ 0.14
CUX1-213ENST00000549414 AGTRAPQ6RW13 159 aa15.9■□□□□ 0.14
CUX1-213ENST00000549414 KCTD8Q6ZWB6 473 aa15.9■□□□□ 0.14
CUX1-213ENST00000549414 FAM129CQ86XR2 697 aa15.9■□□□□ 0.14
CUX1-213ENST00000549414 GALNT13Q8IUC8 556 aa15.9■□□□□ 0.14
CUX1-213ENST00000549414 NUS1Q96E22 293 aa15.9■□□□□ 0.14
CUX1-213ENST00000549414 ELAC1Q9H777 363 aaKnown RBP15.9■□□□□ 0.14
CUX1-213ENST00000549414 KLHL1Q9NR64 748 aa15.9■□□□□ 0.14
CUX1-213ENST00000549414 INTS7Q9NVH2 962 aaKnown RBP15.9■□□□□ 0.14
CUX1-213ENST00000549414 ATP6V1HQ9UI12 483 aa15.9■□□□□ 0.14
CUX1-213ENST00000549414 ASCC3Q8N3C0 2202 aaKnown RBP15.9■□□□□ 0.14
CUX1-213ENST00000549414 CD70P32970 193 aa15.9■□□□□ 0.14
CUX1-213ENST00000549414 HTR6P50406 440 aa15.9■□□□□ 0.14
CUX1-213ENST00000549414 PTPRRQ15256 657 aa15.9■□□□□ 0.14
CUX1-213ENST00000549414 SPNS2Q8IVW8 549 aa15.9■□□□□ 0.14
CUX1-213ENST00000549414 LEMD2Q8NC56 503 aa15.9■□□□□ 0.14
CUX1-213ENST00000549414 PXYLP1Q8TE99 480 aa15.9■□□□□ 0.14
CUX1-213ENST00000549414 ZNF607Q96SK3 696 aa15.9■□□□□ 0.14
CUX1-213ENST00000549414 SEZ6LQ9BYH1 1024 aa15.9■□□□□ 0.14
CUX1-213ENST00000549414 OR51B5Q9H339 312 aa15.9■□□□□ 0.14
CUX1-213ENST00000549414 TMEM98Q9Y2Y6 226 aa15.9■□□□□ 0.14
CUX1-213ENST00000549414 SMAD6O43541 496 aaKnown RBP15.89■□□□□ 0.13
CUX1-213ENST00000549414 OR10H2O60403 315 aa15.89■□□□□ 0.13
CUX1-213ENST00000549414 ENGP17813 658 aa15.89■□□□□ 0.13
CUX1-213ENST00000549414 NANOGP8Q6NSW7 305 aa15.89■□□□□ 0.13
CUX1-213ENST00000549414 HDDC3Q8N4P3 179 aa15.89■□□□□ 0.13
CUX1-213ENST00000549414 KRTCAP2Q8N6L1 136 aa15.89■□□□□ 0.13
CUX1-213ENST00000549414 IRF7Q92985 503 aa15.89■□□□□ 0.13
CUX1-213ENST00000549414 FBXL20Q96IG2 436 aa15.89■□□□□ 0.13
CUX1-213ENST00000549414 CD244Q9BZW8 370 aa15.89■□□□□ 0.13
CUX1-213ENST00000549414 TPK1Q9H3S4 243 aa15.89■□□□□ 0.13
CUX1-213ENST00000549414 NANOGQ9H9S0 305 aa15.89■□□□□ 0.13
Retrieved 100 of 20,778 RNA–protein pairs in 31.1 ms