RNA–Protein interactions for RNA: ENST00000547825.5

LIMA1-203, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 3,920 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-203ENST00000547825 TEX44Q53QW1 395 aa5.37□□□□□ -1.55
LIMA1-203ENST00000547825 OGFRL1Q5TC84 451 aaPredicted RBP5.37□□□□□ -1.55
LIMA1-203ENST00000547825 SDHAF4Q5VUM1 108 aa5.37□□□□□ -1.55
LIMA1-203ENST00000547825 UBE2UQ5VVX9 321 aa5.37□□□□□ -1.55
LIMA1-203ENST00000547825 METTL7BQ6UX53 244 aa5.37□□□□□ -1.55
LIMA1-203ENST00000547825 UBE2R2Q712K3 238 aaPredicted RBP5.37□□□□□ -1.55
LIMA1-203ENST00000547825 DET1Q7L5Y6 550 aa5.37□□□□□ -1.55
LIMA1-203ENST00000547825 MFSD2AQ8NA29 543 aa5.37□□□□□ -1.55
LIMA1-203ENST00000547825 LPCAT1Q8NF37 534 aa5.37□□□□□ -1.55
LIMA1-203ENST00000547825 RDH11Q8TC12 318 aa5.37□□□□□ -1.55
LIMA1-203ENST00000547825 HM13Q8TCT9 377 aa5.37□□□□□ -1.55
LIMA1-203ENST00000547825 TRIM63Q969Q1 353 aa5.37□□□□□ -1.55
LIMA1-203ENST00000547825 SEPT5Q99719 369 aaPredicted RBP5.37□□□□□ -1.55
LIMA1-203ENST00000547825 SEZ6LQ9BYH1 1024 aa5.37□□□□□ -1.55
LIMA1-203ENST00000547825 ZBTB26Q9HCK0 441 aa5.37□□□□□ -1.55
LIMA1-203ENST00000547825 PDLIM7Q9NR12 457 aa5.37□□□□□ -1.55
LIMA1-203ENST00000547825 TMLHEQ9NVH6 421 aa5.37□□□□□ -1.55
LIMA1-203ENST00000547825 FETUBQ9UGM5 382 aa5.37□□□□□ -1.55
LIMA1-203ENST00000547825 SLC2A6Q9UGQ3 507 aa5.37□□□□□ -1.55
LIMA1-203ENST00000547825 IKZF3Q9UKT9 509 aa5.37□□□□□ -1.55
LIMA1-203ENST00000547825 SPEF1Q9Y4P9 236 aa5.37□□□□□ -1.55
LIMA1-203ENST00000547825 POLR3HQ9Y535 204 aaPredicted RBP5.37□□□□□ -1.55
LIMA1-203ENST00000547825 PLOD2O00469 737 aa5.37□□□□□ -1.55
LIMA1-203ENST00000547825 BCKDKO14874 412 aa5.37□□□□□ -1.55
LIMA1-203ENST00000547825 ARPC2O15144 300 aa5.37□□□□□ -1.55
LIMA1-203ENST00000547825 NCAM2O15394 837 aa5.37□□□□□ -1.55
LIMA1-203ENST00000547825 AIREO43918 545 aa5.37□□□□□ -1.55
LIMA1-203ENST00000547825 GCATO75600 419 aa5.37□□□□□ -1.55
LIMA1-203ENST00000547825 SNX4O95219 450 aa5.37□□□□□ -1.55
LIMA1-203ENST00000547825 POMCP01189 267 aa5.37□□□□□ -1.55
LIMA1-203ENST00000547825 CSF2P04141 144 aa5.37□□□□□ -1.55
LIMA1-203ENST00000547825 LINC00271P0C7V0 271 aa5.37□□□□□ -1.55
LIMA1-203ENST00000547825 MSH3P20585 1137 aa5.37□□□□□ -1.55
LIMA1-203ENST00000547825 PRKCHP24723 683 aa5.37□□□□□ -1.55
LIMA1-203ENST00000547825 LMO2P25791 158 aa5.37□□□□□ -1.55
LIMA1-203ENST00000547825 ADRA1BP35368 520 aa5.37□□□□□ -1.55
LIMA1-203ENST00000547825 FPGSQ05932 587 aa5.37□□□□□ -1.55
LIMA1-203ENST00000547825 BNIP2Q12982 314 aa5.37□□□□□ -1.55
LIMA1-203ENST00000547825 GALNT3Q14435 633 aa5.37□□□□□ -1.55
LIMA1-203ENST00000547825 MOGQ16653 247 aa5.37□□□□□ -1.55
LIMA1-203ENST00000547825 SOWAHAQ2M3V2 549 aa5.37□□□□□ -1.55
LIMA1-203ENST00000547825 ZNF284Q2VY69 593 aa5.37□□□□□ -1.55
LIMA1-203ENST00000547825 FAM214AQ32MH5 1076 aa5.37□□□□□ -1.55
LIMA1-203ENST00000547825 PYDC2Q56P42 97 aa5.37□□□□□ -1.55
LIMA1-203ENST00000547825 RNASE12Q5GAN4 147 aaKnown RBP5.37□□□□□ -1.55
LIMA1-203ENST00000547825 XRRA1Q6P2D8 792 aa5.37□□□□□ -1.55
LIMA1-203ENST00000547825 NOTUMQ6P988 496 aa5.37□□□□□ -1.55
LIMA1-203ENST00000547825 NIPA1Q7RTP0 329 aa5.37□□□□□ -1.55
LIMA1-203ENST00000547825 HDDC2Q7Z4H3 204 aa5.37□□□□□ -1.55
LIMA1-203ENST00000547825 METTL25Q8N6Q8 603 aa5.37□□□□□ -1.55
LIMA1-203ENST00000547825 PQLC3Q8N755 202 aa5.37□□□□□ -1.55
LIMA1-203ENST00000547825 PIK3C3Q8NEB9 887 aa5.37□□□□□ -1.55
LIMA1-203ENST00000547825 OR56A4Q8NGH8 313 aa5.37□□□□□ -1.55
LIMA1-203ENST00000547825 HOPXQ9BPY8 73 aaPredicted RBP5.37□□□□□ -1.55
LIMA1-203ENST00000547825 C16orf70Q9BSU1 422 aa5.37□□□□□ -1.55
LIMA1-203ENST00000547825 CXCL16Q9H2A7 254 aa5.37□□□□□ -1.55
LIMA1-203ENST00000547825 LHX5Q9H2C1 402 aa5.37□□□□□ -1.55
LIMA1-203ENST00000547825 ASB7Q9H672 318 aa5.37□□□□□ -1.55
LIMA1-203ENST00000547825 AKTIPQ9H8T0 292 aa5.37□□□□□ -1.55
LIMA1-203ENST00000547825 MAGEE1Q9HCI5 957 aa5.37□□□□□ -1.55
LIMA1-203ENST00000547825 PNPLA8Q9NP80 782 aa5.37□□□□□ -1.55
LIMA1-203ENST00000547825 KRT84Q9NSB2 600 aa5.37□□□□□ -1.55
LIMA1-203ENST00000547825 OBP2AQ9NY56 170 aa5.37□□□□□ -1.55
LIMA1-203ENST00000547825 AASSQ9UDR5 926 aa5.37□□□□□ -1.55
LIMA1-203ENST00000547825 CRLS1Q9UJA2 301 aa5.37□□□□□ -1.55
LIMA1-203ENST00000547825 VPS4AQ9UN37 437 aa5.37□□□□□ -1.55
LIMA1-203ENST00000547825 GMEB1Q9Y692 573 aa5.37□□□□□ -1.55
LIMA1-203ENST00000547825 PATJQ8NI35 1801 aa5.37□□□□□ -1.55
LIMA1-203ENST00000547825 TTC3P53804 2025 aa5.37□□□□□ -1.55
LIMA1-203ENST00000547825 A0A1W2PQ45 241 aaPredicted RBP5.37□□□□□ -1.55
LIMA1-203ENST00000547825 A0A1W2PQY0 241 aa5.37□□□□□ -1.55
LIMA1-203ENST00000547825 C7orf72A4D263 438 aa5.37□□□□□ -1.55
LIMA1-203ENST00000547825 CCDC182A6NF36 153 aa5.37□□□□□ -1.55
LIMA1-203ENST00000547825 RRN3P2A6NIE6 340 aa5.37□□□□□ -1.55
LIMA1-203ENST00000547825 C2orf81A6NN90 581 aa5.37□□□□□ -1.55
LIMA1-203ENST00000547825 MSI1O43347 362 aaKnown RBP5.37□□□□□ -1.55
LIMA1-203ENST00000547825 OIP5O43482 229 aa5.37□□□□□ -1.55
LIMA1-203ENST00000547825 LEFTY1O75610 366 aa5.37□□□□□ -1.55
LIMA1-203ENST00000547825 F9P00740 461 aa5.37□□□□□ -1.55
LIMA1-203ENST00000547825 ALOX5P09917 674 aa5.37□□□□□ -1.55
LIMA1-203ENST00000547825 FAM163BP0C2L3 166 aa5.37□□□□□ -1.55
LIMA1-203ENST00000547825 CD36P16671 472 aa5.37□□□□□ -1.55
LIMA1-203ENST00000547825 ARF4P18085 180 aaPredicted RBP5.37□□□□□ -1.55
LIMA1-203ENST00000547825 MATKP42679 507 aa5.37□□□□□ -1.55
LIMA1-203ENST00000547825 POLD2P49005 469 aa5.37□□□□□ -1.55
LIMA1-203ENST00000547825 GSK3BP49841 420 aa5.37□□□□□ -1.55
LIMA1-203ENST00000547825 DIO3P55073 304 aa5.37□□□□□ -1.55
LIMA1-203ENST00000547825 OXCT1P55809 520 aa5.37□□□□□ -1.55
LIMA1-203ENST00000547825 RPS3AP61247 264 aaKnown RBP5.37□□□□□ -1.55
LIMA1-203ENST00000547825 PURAQ00577 322 aaKnown RBP5.37□□□□□ -1.55
LIMA1-203ENST00000547825 ALDH6A1Q02252 535 aaKnown RBP5.37□□□□□ -1.55
LIMA1-203ENST00000547825 SRSF11Q05519 484 aaKnown RBP5.37□□□□□ -1.55
LIMA1-203ENST00000547825 GALEQ14376 348 aa5.37□□□□□ -1.55
LIMA1-203ENST00000547825 ANGPT1Q15389 498 aa5.37□□□□□ -1.55
LIMA1-203ENST00000547825 FSCN1Q16658 493 aaKnown RBP5.37□□□□□ -1.55
LIMA1-203ENST00000547825 RBM20Q5T481 1227 aaKnown RBP5.37□□□□□ -1.55
LIMA1-203ENST00000547825 HECTD2Q5U5R9 776 aa5.37□□□□□ -1.55
LIMA1-203ENST00000547825 PLEKHM3Q6ZWE6 761 aa5.37□□□□□ -1.55
LIMA1-203ENST00000547825 C16orf59Q7L2K0 433 aa5.37□□□□□ -1.55
LIMA1-203ENST00000547825 C16orf62Q7Z3J2 963 aa5.37□□□□□ -1.55
Retrieved 100 of 20,778 RNA–protein pairs in 23.3 ms