RNA–Protein interactions for RNA: ENST00000540798.5

RTN3-210, Transcript of reticulon 3, humanhuman

TSL 1 (best) BASIC

Gene RTN3, Length 3,124 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-210ENST00000540798 ZNF696Q9H7X3 374 aa13.42□□□□□ -0.26
RTN3-210ENST00000540798 DNAJC11Q9NVH1 559 aa13.42□□□□□ -0.26
RTN3-210ENST00000540798 SNX6Q9UNH7 406 aa13.42□□□□□ -0.26
RTN3-210ENST00000540798 USP22Q9UPT9 525 aa13.42□□□□□ -0.26
RTN3-210ENST00000540798 TRBV5-3A0A0A0MS03 114 aa13.42□□□□□ -0.26
RTN3-210ENST00000540798 TMEM202A6NGA9 273 aa13.42□□□□□ -0.26
RTN3-210ENST00000540798 UGDHO60701 494 aa13.42□□□□□ -0.26
RTN3-210ENST00000540798 SEC22BO75396 215 aa13.42□□□□□ -0.26
RTN3-210ENST00000540798 IMPDH2P12268 514 aa13.42□□□□□ -0.26
RTN3-210ENST00000540798 BCKDHAP12694 445 aa13.42□□□□□ -0.26
RTN3-210ENST00000540798 CASP2P42575 452 aa13.42□□□□□ -0.26
RTN3-210ENST00000540798 CCT8P50990 548 aa13.42□□□□□ -0.26
RTN3-210ENST00000540798 OR4D2P58180 307 aa13.42□□□□□ -0.26
RTN3-210ENST00000540798 ZNF33BQ06732 778 aa13.42□□□□□ -0.26
RTN3-210ENST00000540798 MESP2Q0VG99 397 aa13.42□□□□□ -0.26
RTN3-210ENST00000540798 IMPG1Q17R60 797 aa13.42□□□□□ -0.26
RTN3-210ENST00000540798 ZNF284Q2VY69 593 aa13.42□□□□□ -0.26
RTN3-210ENST00000540798 EEF1AKMT2Q5JPI9 291 aaKnown RBP13.42□□□□□ -0.26
RTN3-210ENST00000540798 ZNF648Q5T619 568 aaPredicted RBP13.42□□□□□ -0.26
RTN3-210ENST00000540798 CYP2U1Q7Z449 544 aa13.42□□□□□ -0.26
RTN3-210ENST00000540798 EPHX4Q8IUS5 362 aa13.42□□□□□ -0.26
RTN3-210ENST00000540798 BEND7Q8N7W2 519 aaPredicted RBP13.42□□□□□ -0.26
RTN3-210ENST00000540798 NXPE3Q969Y0 559 aa13.42□□□□□ -0.26
RTN3-210ENST00000540798 ZBTB18Q99592 522 aa13.42□□□□□ -0.26
RTN3-210ENST00000540798 OSBPL11Q9BXB4 747 aa13.42□□□□□ -0.26
RTN3-210ENST00000540798 EPHX3Q9H6B9 360 aa13.42□□□□□ -0.26
RTN3-210ENST00000540798 RPF2Q9H7B2 306 aaKnown RBP13.42□□□□□ -0.26
RTN3-210ENST00000540798 KANSL1LA0AUZ9 987 aa13.42□□□□□ -0.26
RTN3-210ENST00000540798 KCNH1O95259 989 aa13.42□□□□□ -0.26
RTN3-210ENST00000540798 MYOGP15173 224 aa13.42□□□□□ -0.26
RTN3-210ENST00000540798 HOXB9P17482 250 aaPredicted RBP13.42□□□□□ -0.26
RTN3-210ENST00000540798 HNRNPFP52597 415 aaKnown RBP13.42□□□□□ -0.26
RTN3-210ENST00000540798 MYBPC1Q00872 1141 aa13.42□□□□□ -0.26
RTN3-210ENST00000540798 GRIN2CQ14957 1233 aa13.42□□□□□ -0.26
RTN3-210ENST00000540798 CPSF6Q16630 551 aaKnown RBP eCLIP13.42□□□□□ -0.26
RTN3-210ENST00000540798 HABP4Q5JVS0 413 aaKnown RBP13.42□□□□□ -0.26
RTN3-210ENST00000540798 ERAP2Q6P179 960 aa13.42□□□□□ -0.26
RTN3-210ENST00000540798 CARM1Q86X55 608 aa13.42□□□□□ -0.26
RTN3-210ENST00000540798 MSRB3Q8IXL7 192 aa13.42□□□□□ -0.26
RTN3-210ENST00000540798 MFSD2AQ8NA29 543 aa13.42□□□□□ -0.26
RTN3-210ENST00000540798 TMIEQ8NEW7 156 aa13.42□□□□□ -0.26
RTN3-210ENST00000540798 CMTM7Q96FZ5 175 aa13.42□□□□□ -0.26
RTN3-210ENST00000540798 CIB1Q99828 191 aa13.42□□□□□ -0.26
RTN3-210ENST00000540798 DPY30Q9C005 99 aa13.42□□□□□ -0.26
RTN3-210ENST00000540798 ZNHIT2Q9UHR6 403 aa13.42□□□□□ -0.26
RTN3-210ENST00000540798 MAGEL2Q9UJ55 1249 aa13.42□□□□□ -0.26
RTN3-210ENST00000540798 PRRT4C9JH25 899 aa13.41□□□□□ -0.26
RTN3-210ENST00000540798 SOCS2O14508 198 aa13.41□□□□□ -0.26
RTN3-210ENST00000540798 AREL1O15033 823 aa13.41□□□□□ -0.26
RTN3-210ENST00000540798 AKAP10O43572 662 aa13.41□□□□□ -0.26
RTN3-210ENST00000540798 SOD1P00441 154 aa13.41□□□□□ -0.26
RTN3-210ENST00000540798 ELFN1P0C7U0 828 aa13.41□□□□□ -0.26
RTN3-210ENST00000540798 FCGR1AP12314 374 aa13.41□□□□□ -0.26
RTN3-210ENST00000540798 CTSCP53634 463 aa13.41□□□□□ -0.26
RTN3-210ENST00000540798 DTD2Q96FN9 168 aa13.41□□□□□ -0.26
RTN3-210ENST00000540798 PPM1MQ96MI6 270 aa13.41□□□□□ -0.26
RTN3-210ENST00000540798 VAPAQ9P0L0 249 aa13.41□□□□□ -0.26
RTN3-210ENST00000540798 SLC22A14Q9Y267 594 aa13.41□□□□□ -0.26
RTN3-210ENST00000540798 TMED5Q9Y3A6 229 aa13.41□□□□□ -0.26
RTN3-210ENST00000540798 ARHGEF33A8MVX0 844 aa13.41□□□□□ -0.26
RTN3-210ENST00000540798 TSPAN6O43657 245 aa13.41□□□□□ -0.26
RTN3-210ENST00000540798 PGRP06401 933 aa13.41□□□□□ -0.26
RTN3-210ENST00000540798 PRPS2P11908 318 aa13.41□□□□□ -0.26
RTN3-210ENST00000540798 JUPP14923 745 aa13.41□□□□□ -0.26
RTN3-210ENST00000540798 NCK1P16333 377 aa13.41□□□□□ -0.26
RTN3-210ENST00000540798 VIPR2P41587 438 aa13.41□□□□□ -0.26
RTN3-210ENST00000540798 CLDN8P56748 225 aa13.41□□□□□ -0.26
RTN3-210ENST00000540798 GK3PQ14409 553 aa13.41□□□□□ -0.26
RTN3-210ENST00000540798 NRF1Q16656 503 aa13.41□□□□□ -0.26
RTN3-210ENST00000540798 FAM174BQ3ZCQ3 159 aa13.41□□□□□ -0.26
RTN3-210ENST00000540798 LRRC23Q53EV4 343 aaPredicted RBP13.41□□□□□ -0.26
RTN3-210ENST00000540798 SGO1Q5FBB7 561 aa13.41□□□□□ -0.26
RTN3-210ENST00000540798 NHSL2Q5HYW2 709 aa13.41□□□□□ -0.26
RTN3-210ENST00000540798 SPRED1Q7Z699 444 aa13.41□□□□□ -0.26
RTN3-210ENST00000540798 ADGRD2Q7Z7M1 963 aa13.41□□□□□ -0.26
RTN3-210ENST00000540798 DNAJB8Q8NHS0 232 aa13.41□□□□□ -0.26
RTN3-210ENST00000540798 CENPNQ96H22 339 aaPredicted RBP13.41□□□□□ -0.26
RTN3-210ENST00000540798 ZNF583Q96ND8 569 aa13.41□□□□□ -0.26
RTN3-210ENST00000540798 ZFP14Q9HCL3 533 aa13.41□□□□□ -0.26
RTN3-210ENST00000540798 DNAAF2Q9NVR5 837 aaKnown RBP13.41□□□□□ -0.26
RTN3-210ENST00000540798 MAN2B2Q9Y2E5 1009 aa13.41□□□□□ -0.26
RTN3-210ENST00000540798 OR2AG2A6NM03 316 aa13.4□□□□□ -0.26
RTN3-210ENST00000540798 DLGAP1O14490 977 aa13.4□□□□□ -0.26
RTN3-210ENST00000540798 WNT9AO14904 365 aa13.4□□□□□ -0.26
RTN3-210ENST00000540798 NPC1O15118 1278 aa13.4□□□□□ -0.26
RTN3-210ENST00000540798 INPP4BO15327 924 aa13.4□□□□□ -0.26
RTN3-210ENST00000540798 PRNPP04156 253 aa13.4□□□□□ -0.26
RTN3-210ENST00000540798 GGT1P19440 569 aa13.4□□□□□ -0.26
RTN3-210ENST00000540798 XPAP23025 273 aaPredicted RBP13.4□□□□□ -0.26
RTN3-210ENST00000540798 FASP25445 335 aa13.4□□□□□ -0.26
RTN3-210ENST00000540798 ITGB7P26010 798 aa13.4□□□□□ -0.26
RTN3-210ENST00000540798 ROR2Q01974 943 aaKnown RBP13.4□□□□□ -0.26
RTN3-210ENST00000540798 ATP6AP1Q15904 470 aa13.4□□□□□ -0.26
RTN3-210ENST00000540798 CYP51A1Q16850 503 aa13.4□□□□□ -0.26
RTN3-210ENST00000540798 PLA2G4EQ3MJ16 856 aa13.4□□□□□ -0.26
RTN3-210ENST00000540798 SPANXN4Q5MJ08 99 aa13.4□□□□□ -0.26
RTN3-210ENST00000540798 C9orf64Q5T6V5 341 aa13.4□□□□□ -0.26
RTN3-210ENST00000540798 LIPJQ5W064 366 aa13.4□□□□□ -0.26
RTN3-210ENST00000540798 ZNF765Q7L2R6 523 aa13.4□□□□□ -0.26
RTN3-210ENST00000540798 RIMKLAQ8IXN7 391 aa13.4□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 40.4 ms