RNA–Protein interactions for RNA: ENST00000540010.1

TRAF1-202, Transcript of TNF receptor associated factor 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TRAF1, Length 4,303 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRAF1-202ENST00000540010 DEF8Q6ZN54 512 aa9.77□□□□□ -0.85
TRAF1-202ENST00000540010 CILP2Q8IUL8 1156 aa9.77□□□□□ -0.85
TRAF1-202ENST00000540010 DEPDC4Q8N2C3 294 aa9.77□□□□□ -0.85
TRAF1-202ENST00000540010 CITED4Q96RK1 184 aa9.77□□□□□ -0.85
TRAF1-202ENST00000540010 SMG9Q9H0W8 520 aaKnown RBP9.77□□□□□ -0.85
TRAF1-202ENST00000540010 RETREG1Q9H6L5 497 aa9.77□□□□□ -0.85
TRAF1-202ENST00000540010 ARIH1Q9Y4X5 557 aaPredicted RBP9.77□□□□□ -0.85
TRAF1-202ENST00000540010 LOC285095A0A1B0GVY8 99 aa9.77□□□□□ -0.85
TRAF1-202ENST00000540010 PALM2-AKAP2B1ALY0 433 aaPredicted RBP9.77□□□□□ -0.85
TRAF1-202ENST00000540010 LSM1O15116 133 aaKnown RBP9.77□□□□□ -0.85
TRAF1-202ENST00000540010 RAP2AP10114 183 aa9.77□□□□□ -0.85
TRAF1-202ENST00000540010 CTSAP10619 480 aa9.77□□□□□ -0.85
TRAF1-202ENST00000540010 GSTM5P46439 218 aa9.77□□□□□ -0.85
TRAF1-202ENST00000540010 CCT3P49368 545 aaKnown RBP9.77□□□□□ -0.85
TRAF1-202ENST00000540010 COX10Q12887 443 aa9.77□□□□□ -0.85
TRAF1-202ENST00000540010 CACTIN-AS1Q8N1I8 211 aa9.77□□□□□ -0.85
TRAF1-202ENST00000540010 VANGL1Q8TAA9 524 aaPredicted RBP9.77□□□□□ -0.85
TRAF1-202ENST00000540010 SLC22A17Q8WUG5 538 aa9.77□□□□□ -0.85
TRAF1-202ENST00000540010 CDKN2AIPNLQ96HQ2 116 aa9.77□□□□□ -0.85
TRAF1-202ENST00000540010 MGME1Q9BQP7 344 aa9.77□□□□□ -0.85
TRAF1-202ENST00000540010 KCNK13Q9HB14 408 aa9.77□□□□□ -0.85
TRAF1-202ENST00000540010 MARCH4Q9P2E8 410 aaPredicted RBP9.77□□□□□ -0.85
TRAF1-202ENST00000540010 SUCOQ9UBS9 1254 aaKnown RBP9.77□□□□□ -0.85
TRAF1-202ENST00000540010 CCDC182A6NF36 153 aa9.77□□□□□ -0.85
TRAF1-202ENST00000540010 PLOD3O60568 738 aa9.77□□□□□ -0.85
TRAF1-202ENST00000540010 ATXN1LP0C7T5 689 aaKnown RBP9.77□□□□□ -0.85
TRAF1-202ENST00000540010 GDF5P43026 501 aa9.77□□□□□ -0.85
TRAF1-202ENST00000540010 DGKEP52429 567 aa9.77□□□□□ -0.85
TRAF1-202ENST00000540010 PTPN5P54829 565 aa9.77□□□□□ -0.85
TRAF1-202ENST00000540010 SNRPD1P62314 119 aaKnown RBP9.77□□□□□ -0.85
TRAF1-202ENST00000540010 HERC3Q15034 1050 aa9.77□□□□□ -0.85
TRAF1-202ENST00000540010 ARHGAP15Q53QZ3 475 aa9.77□□□□□ -0.85
TRAF1-202ENST00000540010 CPTPQ5TA50 214 aa9.77□□□□□ -0.85
TRAF1-202ENST00000540010 CNTN4Q8IWV2 1026 aa9.77□□□□□ -0.85
TRAF1-202ENST00000540010 SIX5Q8N196 739 aa9.77□□□□□ -0.85
TRAF1-202ENST00000540010 KRT78Q8N1N4 520 aa9.77□□□□□ -0.85
TRAF1-202ENST00000540010 CLDN19Q8N6F1 224 aa9.77□□□□□ -0.85
TRAF1-202ENST00000540010 TTC29Q8NA56 475 aaPredicted RBP9.77□□□□□ -0.85
TRAF1-202ENST00000540010 OR13J1Q8NGT2 312 aa9.77□□□□□ -0.85
TRAF1-202ENST00000540010 PRRG3Q9BZD7 231 aa9.77□□□□□ -0.85
TRAF1-202ENST00000540010 CRNNQ9UBG3 495 aaPredicted RBP9.77□□□□□ -0.85
TRAF1-202ENST00000540010 PTGDR2Q9Y5Y4 395 aa9.77□□□□□ -0.85
TRAF1-202ENST00000540010 FPGTO14772 594 aa9.76□□□□□ -0.85
TRAF1-202ENST00000540010 IL1BP01584 269 aa9.76□□□□□ -0.85
TRAF1-202ENST00000540010 ZNF12P17014 697 aa9.76□□□□□ -0.85
TRAF1-202ENST00000540010 TNNI3P19429 210 aa9.76□□□□□ -0.85
TRAF1-202ENST00000540010 MAGEA10P43363 369 aaPredicted RBP9.76□□□□□ -0.85
TRAF1-202ENST00000540010 ATP12AP54707 1039 aa9.76□□□□□ -0.85
TRAF1-202ENST00000540010 FPGSQ05932 587 aa9.76□□□□□ -0.85
TRAF1-202ENST00000540010 NAE1Q13564 534 aa9.76□□□□□ -0.85
TRAF1-202ENST00000540010 CYP4Z2PQ8N1L4 340 aa9.76□□□□□ -0.85
TRAF1-202ENST00000540010 CLIP4Q8N3C7 705 aa9.76□□□□□ -0.85
TRAF1-202ENST00000540010 TRIM63Q969Q1 353 aa9.76□□□□□ -0.85
TRAF1-202ENST00000540010 GTPBP3Q969Y2 492 aaKnown RBP9.76□□□□□ -0.85
TRAF1-202ENST00000540010 MTERF1Q99551 399 aaKnown RBP9.76□□□□□ -0.85
TRAF1-202ENST00000540010 MTIF3Q9H2K0 278 aaKnown RBP9.76□□□□□ -0.85
TRAF1-202ENST00000540010 BRD9Q9H8M2 597 aa9.76□□□□□ -0.85
TRAF1-202ENST00000540010 WBP11Q9Y2W2 641 aaKnown RBP9.76□□□□□ -0.85
TRAF1-202ENST00000540010 OR2AG2A6NM03 316 aa9.76□□□□□ -0.85
TRAF1-202ENST00000540010 SDHDO14521 159 aa9.76□□□□□ -0.85
TRAF1-202ENST00000540010 SLC22A2O15244 555 aa9.76□□□□□ -0.85
TRAF1-202ENST00000540010 LDB2O43679 373 aa9.76□□□□□ -0.85
TRAF1-202ENST00000540010 UGT2B11O75310 529 aa9.76□□□□□ -0.85
TRAF1-202ENST00000540010 F11P03951 625 aa9.76□□□□□ -0.85
TRAF1-202ENST00000540010 IL6P05231 212 aa9.76□□□□□ -0.85
TRAF1-202ENST00000540010 NR2F1P10589 423 aa9.76□□□□□ -0.85
TRAF1-202ENST00000540010 MS4A2Q01362 244 aa9.76□□□□□ -0.85
TRAF1-202ENST00000540010 MPPE1Q53F39 396 aa9.76□□□□□ -0.85
TRAF1-202ENST00000540010 NUDT18Q6ZVK8 323 aa9.76□□□□□ -0.85
TRAF1-202ENST00000540010 ERMP1Q7Z2K6 904 aa9.76□□□□□ -0.85
TRAF1-202ENST00000540010 EGFL6Q8IUX8 553 aa9.76□□□□□ -0.85
TRAF1-202ENST00000540010 HOMEZQ8IX15 550 aa9.76□□□□□ -0.85
TRAF1-202ENST00000540010 PIH1D2Q8WWB5 315 aa9.76□□□□□ -0.85
TRAF1-202ENST00000540010 BADQ92934 168 aa9.76□□□□□ -0.85
TRAF1-202ENST00000540010 RPL10LQ96L21 214 aaKnown RBP9.76□□□□□ -0.85
TRAF1-202ENST00000540010 TNKS2Q9H2K2 1166 aa9.76□□□□□ -0.85
TRAF1-202ENST00000540010 SMURF2Q9HAU4 748 aa9.76□□□□□ -0.85
TRAF1-202ENST00000540010 CD320Q9NPF0 282 aa9.76□□□□□ -0.85
TRAF1-202ENST00000540010 RPRD1BQ9NQG5 326 aaKnown RBP9.76□□□□□ -0.85
TRAF1-202ENST00000540010 VPS51Q9UID3 782 aa9.76□□□□□ -0.85
TRAF1-202ENST00000540010 ECI2O75521 394 aa9.76□□□□□ -0.85
TRAF1-202ENST00000540010 CLDN9O95484 217 aa9.76□□□□□ -0.85
TRAF1-202ENST00000540010 SNAP29O95721 258 aa9.76□□□□□ -0.85
TRAF1-202ENST00000540010 UGT2B4P06133 528 aa9.76□□□□□ -0.85
TRAF1-202ENST00000540010 ALOX5P09917 674 aa9.76□□□□□ -0.85
TRAF1-202ENST00000540010 ERVK-8P63133 956 aa9.76□□□□□ -0.85
TRAF1-202ENST00000540010 MEP1AQ16819 746 aa9.76□□□□□ -0.85
TRAF1-202ENST00000540010 LRRC73Q5JTD7 316 aa9.76□□□□□ -0.85
TRAF1-202ENST00000540010 C11orf88Q6PI97 169 aa9.76□□□□□ -0.85
TRAF1-202ENST00000540010 CCDC80Q76M96 950 aa9.76□□□□□ -0.85
TRAF1-202ENST00000540010 CDH24Q86UP0 819 aa9.76□□□□□ -0.85
TRAF1-202ENST00000540010 HID1Q8IV36 788 aa9.76□□□□□ -0.85
TRAF1-202ENST00000540010 ST13P5Q8NFI4 369 aaPredicted RBP9.76□□□□□ -0.85
TRAF1-202ENST00000540010 ISL2Q96A47 359 aa9.76□□□□□ -0.85
TRAF1-202ENST00000540010 MARCH7Q9H992 704 aa9.76□□□□□ -0.85
TRAF1-202ENST00000540010 PDFQ9HBH1 243 aa9.76□□□□□ -0.85
TRAF1-202ENST00000540010 C8orf4Q9NR00 106 aa9.76□□□□□ -0.85
TRAF1-202ENST00000540010 ST14Q9Y5Y6 855 aa9.76□□□□□ -0.85
TRAF1-202ENST00000540010 GLYATL1P3A0A0U1RQE8 302 aa9.75□□□□□ -0.85
TRAF1-202ENST00000540010 G3V2L1 256 aa9.75□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 11.2 ms