RNA–Protein interactions for RNA: ENST00000538827.5

CD4-208, Transcript of CD4 molecule, humanhuman

TSL 1 (best)

Gene CD4, Length 985 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD4-208ENST00000538827 SEC24CP53992 1094 aa13.74□□□□□ -0.21
CD4-208ENST00000538827 BNC1Q01954 994 aa13.74□□□□□ -0.21
CD4-208ENST00000538827 GRIK2Q13002 908 aa13.74□□□□□ -0.21
CD4-208ENST00000538827 DEFB133Q30KQ1 61 aa13.74□□□□□ -0.21
CD4-208ENST00000538827 TUBB8Q3ZCM7 444 aa13.74□□□□□ -0.21
CD4-208ENST00000538827 PEAR1Q5VY43 1037 aaPredicted RBP13.74□□□□□ -0.21
CD4-208ENST00000538827 ANKS6Q68DC2 871 aa13.74□□□□□ -0.21
CD4-208ENST00000538827 ABRAXAS1Q6UWZ7 409 aa13.74□□□□□ -0.21
CD4-208ENST00000538827 FRMD7Q6ZUT3 714 aa13.74□□□□□ -0.21
CD4-208ENST00000538827 SYTL1Q8IYJ3 562 aa13.74□□□□□ -0.21
CD4-208ENST00000538827 RAB42Q8N4Z0 105 aa13.74□□□□□ -0.21
CD4-208ENST00000538827 FBXO15Q8NCQ5 510 aaPredicted RBP13.74□□□□□ -0.21
CD4-208ENST00000538827 PPFIBP2Q8ND30 876 aa13.74□□□□□ -0.21
CD4-208ENST00000538827 FAM46DQ8NEK8 389 aa13.74□□□□□ -0.21
CD4-208ENST00000538827 ZDHHC1Q8WTX9 485 aa13.74□□□□□ -0.21
CD4-208ENST00000538827 PATE1Q8WXA2 126 aa13.74□□□□□ -0.21
CD4-208ENST00000538827 ATL1Q8WXF7 558 aa13.74□□□□□ -0.21
CD4-208ENST00000538827 JPH3Q8WXH2 748 aaPredicted RBP13.74□□□□□ -0.21
CD4-208ENST00000538827 CHMP6Q96FZ7 201 aa13.74□□□□□ -0.21
CD4-208ENST00000538827 NSUN5Q96P11 429 aaKnown RBP13.74□□□□□ -0.21
CD4-208ENST00000538827 ATG10Q9H0Y0 220 aa13.74□□□□□ -0.21
CD4-208ENST00000538827 GSTO2Q9H4Y5 243 aa13.74□□□□□ -0.21
CD4-208ENST00000538827 MVB12BQ9H7P6 319 aa13.74□□□□□ -0.21
CD4-208ENST00000538827 ZNF395Q9H8N7 513 aaPredicted RBP13.74□□□□□ -0.21
CD4-208ENST00000538827 SLCO1B3Q9NPD5 702 aa13.74□□□□□ -0.21
CD4-208ENST00000538827 SEMA4BQ9NPR2 832 aaPredicted RBP13.74□□□□□ -0.21
CD4-208ENST00000538827 FGFR1OP2Q9NVK5 253 aa13.74□□□□□ -0.21
CD4-208ENST00000538827 OPTCQ9UBM4 332 aa13.74□□□□□ -0.21
CD4-208ENST00000538827 PTBP2Q9UKA9 531 aaKnown RBP13.74□□□□□ -0.21
CD4-208ENST00000538827 ASB1Q9Y576 335 aa13.74□□□□□ -0.21
CD4-208ENST00000538827 ZZEF1O43149 2961 aa13.74□□□□□ -0.21
CD4-208ENST00000538827 PRAMEF33A0A0G2JMD5 474 aa13.73□□□□□ -0.21
CD4-208ENST00000538827 A6NCN8 305 aa13.73□□□□□ -0.21
CD4-208ENST00000538827 PATE3B3GLJ2 98 aa13.73□□□□□ -0.21
CD4-208ENST00000538827 KLF11O14901 512 aa13.73□□□□□ -0.21
CD4-208ENST00000538827 KDM1AO60341 852 aa13.73□□□□□ -0.21
CD4-208ENST00000538827 NPHS1O60500 1241 aa13.73□□□□□ -0.21
CD4-208ENST00000538827 SHOX2O60902 331 aaPredicted RBP13.73□□□□□ -0.21
CD4-208ENST00000538827 PIAS2O75928 621 aa13.73□□□□□ -0.21
CD4-208ENST00000538827 EPN2O95208 641 aa13.73□□□□□ -0.21
CD4-208ENST00000538827 SLC16A8O95907 504 aa13.73□□□□□ -0.21
CD4-208ENST00000538827 VIPP01282 170 aa13.73□□□□□ -0.21
CD4-208ENST00000538827 CHRNGP07510 517 aa13.73□□□□□ -0.21
CD4-208ENST00000538827 MPSTP25325 297 aa13.73□□□□□ -0.21
CD4-208ENST00000538827 IMPA1P29218 277 aa13.73□□□□□ -0.21
CD4-208ENST00000538827 HOXD12P35452 270 aa13.73□□□□□ -0.21
CD4-208ENST00000538827 GDF5P43026 501 aa13.73□□□□□ -0.21
CD4-208ENST00000538827 ARRB1P49407 418 aaPredicted RBP13.73□□□□□ -0.21
CD4-208ENST00000538827 HNMTP50135 292 aa13.73□□□□□ -0.21
CD4-208ENST00000538827 CDH13P55290 713 aa13.73□□□□□ -0.21
CD4-208ENST00000538827 SF3A3Q12874 501 aaKnown RBP eCLIP13.73□□□□□ -0.21
CD4-208ENST00000538827 BIRC2Q13490 618 aa13.73□□□□□ -0.21
CD4-208ENST00000538827 PLCL1Q15111 1095 aa13.73□□□□□ -0.21
CD4-208ENST00000538827 CCDC6Q16204 474 aa13.73□□□□□ -0.21
CD4-208ENST00000538827 CSRP2Q16527 193 aa13.73□□□□□ -0.21
CD4-208ENST00000538827 TRIM61Q5EBN2 209 aa13.73□□□□□ -0.21
CD4-208ENST00000538827 CDKL4Q5MAI5 379 aa13.73□□□□□ -0.21
CD4-208ENST00000538827 AGTRAPQ6RW13 159 aa13.73□□□□□ -0.21
CD4-208ENST00000538827 WASH2PQ6VEQ5 465 aa13.73□□□□□ -0.21
CD4-208ENST00000538827 RGS9BPQ6ZS82 235 aa13.73□□□□□ -0.21
CD4-208ENST00000538827 LRRC70Q7Z2Q7 622 aa13.73□□□□□ -0.21
CD4-208ENST00000538827 GOLGA7Q7Z5G4 137 aa13.73□□□□□ -0.21
CD4-208ENST00000538827 C2orf73Q8N5S3 287 aaPredicted RBP13.73□□□□□ -0.21
CD4-208ENST00000538827 TEX9Q8N6V9 391 aa13.73□□□□□ -0.21
CD4-208ENST00000538827 LMNTD1Q8N9Z9 388 aa13.73□□□□□ -0.21
CD4-208ENST00000538827 CEP76Q8TAP6 659 aa13.73□□□□□ -0.21
CD4-208ENST00000538827 AGR3Q8TD06 166 aa13.73□□□□□ -0.21
CD4-208ENST00000538827 ZNF483Q8TF39 744 aaPredicted RBP13.73□□□□□ -0.21
CD4-208ENST00000538827 PYCR2Q96C36 320 aa13.73□□□□□ -0.21
CD4-208ENST00000538827 CAMK1GQ96NX5 476 aa13.73□□□□□ -0.21
CD4-208ENST00000538827 ELF4Q99607 663 aaPredicted RBP13.73□□□□□ -0.21
CD4-208ENST00000538827 SMOC1Q9H4F8 434 aa13.73□□□□□ -0.21
CD4-208ENST00000538827 WASH6PQ9NQA3 447 aa13.73□□□□□ -0.21
CD4-208ENST00000538827 SEMA4GQ9NTN9 838 aa13.73□□□□□ -0.21
CD4-208ENST00000538827 UCKL1Q9NWZ5 548 aa13.73□□□□□ -0.21
CD4-208ENST00000538827 SPATA7Q9P0W8 599 aa13.73□□□□□ -0.21
CD4-208ENST00000538827 PCTPQ9UKL6 214 aa13.73□□□□□ -0.21
CD4-208ENST00000538827 TNPO3Q9Y5L0 923 aaKnown RBP13.73□□□□□ -0.21
CD4-208ENST00000538827 COLEC10Q9Y6Z7 277 aa13.73□□□□□ -0.21
CD4-208ENST00000538827 FRYQ5TBA9 3013 aa13.73□□□□□ -0.21
CD4-208ENST00000538827 SETXQ7Z333 2677 aaKnown RBP13.73□□□□□ -0.21
CD4-208ENST00000538827 PCDH15Q96QU1 1955 aa13.72□□□□□ -0.21
CD4-208ENST00000538827 GMNCA6NCL1 334 aa13.72□□□□□ -0.21
CD4-208ENST00000538827 EDF1O60869 148 aaKnown RBP13.72□□□□□ -0.21
CD4-208ENST00000538827 STK16O75716 305 aa13.72□□□□□ -0.21
CD4-208ENST00000538827 NDUFS1P28331 727 aa13.72□□□□□ -0.21
CD4-208ENST00000538827 MPLP40238 635 aa13.72□□□□□ -0.21
CD4-208ENST00000538827 PNLIPRP1P54315 467 aa13.72□□□□□ -0.21
CD4-208ENST00000538827 MAZP56270 477 aaKnown RBP13.72□□□□□ -0.21
CD4-208ENST00000538827 TBPL1P62380 186 aa13.72□□□□□ -0.21
CD4-208ENST00000538827 CLCQ05315 142 aa13.72□□□□□ -0.21
CD4-208ENST00000538827 NAE1Q13564 534 aa13.72□□□□□ -0.21
CD4-208ENST00000538827 GTF2H2Q13888 395 aa13.72□□□□□ -0.21
CD4-208ENST00000538827 PCBP2Q15366 365 aaKnown RBP eCLIP13.72□□□□□ -0.21
CD4-208ENST00000538827 PTCHD3Q3KNS1 767 aa13.72□□□□□ -0.21
CD4-208ENST00000538827 THEMIS2Q5TEJ8 643 aa13.72□□□□□ -0.21
CD4-208ENST00000538827 GTF2H2CQ6P1K8 395 aa13.72□□□□□ -0.21
CD4-208ENST00000538827 PRR23CQ6ZRP0 262 aa13.72□□□□□ -0.21
CD4-208ENST00000538827 CRLF3Q8IUI8 442 aa13.72□□□□□ -0.21
CD4-208ENST00000538827 SFTPA2Q8IWL1 248 aa13.72□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 24.3 ms