RNA–Protein interactions for RNA: ENST00000537004.5

CLIP1-208, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 1 (best)

Gene CLIP1, Length 2,000 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-208ENST00000537004 IQCF5A8MTL0 148 aa11.66□□□□□ -0.54
CLIP1-208ENST00000537004 CASC3O15234 703 aaKnown RBP11.66□□□□□ -0.54
CLIP1-208ENST00000537004 AQP9O43315 295 aa11.66□□□□□ -0.54
CLIP1-208ENST00000537004 SKAP2O75563 359 aaPredicted RBP11.66□□□□□ -0.54
CLIP1-208ENST00000537004 ZNF7P17097 686 aaPredicted RBP11.66□□□□□ -0.54
CLIP1-208ENST00000537004 TSPAN8P19075 237 aa11.66□□□□□ -0.54
CLIP1-208ENST00000537004 PRDX6P30041 224 aa11.66□□□□□ -0.54
CLIP1-208ENST00000537004 CA5AP35218 305 aa11.66□□□□□ -0.54
CLIP1-208ENST00000537004 SPAM1P38567 509 aa11.66□□□□□ -0.54
CLIP1-208ENST00000537004 CLCN7P51798 805 aa11.66□□□□□ -0.54
CLIP1-208ENST00000537004 PTSQ03393 145 aa11.66□□□□□ -0.54
CLIP1-208ENST00000537004 BTKQ06187 659 aa11.66□□□□□ -0.54
CLIP1-208ENST00000537004 PTK2BQ14289 1009 aa11.66□□□□□ -0.54
CLIP1-208ENST00000537004 NFATC4Q14934 902 aa11.66□□□□□ -0.54
CLIP1-208ENST00000537004 ALG11Q2TAA5 492 aa11.66□□□□□ -0.54
CLIP1-208ENST00000537004 WASHC2DQ5SRD0 308 aa11.66□□□□□ -0.54
CLIP1-208ENST00000537004 CPNE9Q8IYJ1 553 aa11.66□□□□□ -0.54
CLIP1-208ENST00000537004 KIRREL3Q8IZU9 778 aa11.66□□□□□ -0.54
CLIP1-208ENST00000537004 NUS1Q96E22 293 aa11.66□□□□□ -0.54
CLIP1-208ENST00000537004 PDXPQ96GD0 296 aa11.66□□□□□ -0.54
CLIP1-208ENST00000537004 APOLD1Q96LR9 279 aa11.66□□□□□ -0.54
CLIP1-208ENST00000537004 TTC1Q99614 292 aa11.66□□□□□ -0.54
CLIP1-208ENST00000537004 BOCQ9BWV1 1114 aa11.66□□□□□ -0.54
CLIP1-208ENST00000537004 G3BP2Q9UN86 482 aaKnown RBP11.66□□□□□ -0.54
CLIP1-208ENST00000537004 TRAF6Q9Y4K3 522 aa11.66□□□□□ -0.54
CLIP1-208ENST00000537004 LY6G6EA0A0G2JKS1 128 aa11.65□□□□□ -0.54
CLIP1-208ENST00000537004 A0A1W2PQ67 120 aa11.65□□□□□ -0.54
CLIP1-208ENST00000537004 LRRC14BA6NHZ5 514 aa11.65□□□□□ -0.54
CLIP1-208ENST00000537004 COX4I1P13073 169 aa11.65□□□□□ -0.54
CLIP1-208ENST00000537004 CKMT2P17540 419 aa11.65□□□□□ -0.54
CLIP1-208ENST00000537004 UGT1A6P19224 532 aa11.65□□□□□ -0.54
CLIP1-208ENST00000537004 UGT1A1P22309 533 aa11.65□□□□□ -0.54
CLIP1-208ENST00000537004 UGT1A4P22310 534 aa11.65□□□□□ -0.54
CLIP1-208ENST00000537004 RPS3P23396 243 aaKnown RBP eCLIP11.65□□□□□ -0.54
CLIP1-208ENST00000537004 CCND1P24385 295 aa11.65□□□□□ -0.54
CLIP1-208ENST00000537004 ACRV1P26436 265 aa11.65□□□□□ -0.54
CLIP1-208ENST00000537004 UGT1A3P35503 534 aa11.65□□□□□ -0.54
CLIP1-208ENST00000537004 UGT1A5P35504 534 aa11.65□□□□□ -0.54
CLIP1-208ENST00000537004 HK3P52790 923 aa11.65□□□□□ -0.54
CLIP1-208ENST00000537004 CDH13P55290 713 aa11.65□□□□□ -0.54
CLIP1-208ENST00000537004 ARHGEF7Q14155 803 aa11.65□□□□□ -0.54
CLIP1-208ENST00000537004 CHRNA6Q15825 494 aa11.65□□□□□ -0.54
CLIP1-208ENST00000537004 TMEM198Q66K66 360 aa11.65□□□□□ -0.54
CLIP1-208ENST00000537004 PTRHD1Q6GMV3 140 aaKnown RBP11.65□□□□□ -0.54
CLIP1-208ENST00000537004 PNCKQ6P2M8 343 aa11.65□□□□□ -0.54
CLIP1-208ENST00000537004 UNQ6494/PRO21346Q6UXR6 183 aa11.65□□□□□ -0.54
CLIP1-208ENST00000537004 FBXO39Q8N4B4 442 aa11.65□□□□□ -0.54
CLIP1-208ENST00000537004 CPSF7Q8N684 471 aaKnown RBP11.65□□□□□ -0.54
CLIP1-208ENST00000537004 GATA6Q92908 595 aa11.65□□□□□ -0.54
CLIP1-208ENST00000537004 SCAMP4Q969E2 229 aa11.65□□□□□ -0.54
CLIP1-208ENST00000537004 DTD2Q96FN9 168 aa11.65□□□□□ -0.54
CLIP1-208ENST00000537004 CATSPER2Q96P56 530 aa11.65□□□□□ -0.54
CLIP1-208ENST00000537004 ZNF385DQ9H6B1 395 aa11.65□□□□□ -0.54
CLIP1-208ENST00000537004 MEAF6Q9HAF1 191 aa11.65□□□□□ -0.54
CLIP1-208ENST00000537004 FGF22Q9HCT0 170 aa11.65□□□□□ -0.54
CLIP1-208ENST00000537004 CRLS1Q9UJA2 301 aa11.65□□□□□ -0.54
CLIP1-208ENST00000537004 MCM8Q9UJA3 840 aa11.65□□□□□ -0.54
CLIP1-208ENST00000537004 GNPTGQ9UJJ9 305 aa11.65□□□□□ -0.54
CLIP1-208ENST00000537004 DHRS7Q9Y394 339 aa11.65□□□□□ -0.54
CLIP1-208ENST00000537004 MSRB2Q9Y3D2 182 aa11.65□□□□□ -0.54
CLIP1-208ENST00000537004 NEUROG3Q9Y4Z2 214 aa11.65□□□□□ -0.54
CLIP1-208ENST00000537004 SEC23IPQ9Y6Y8 1000 aaKnown RBP11.65□□□□□ -0.54
CLIP1-208ENST00000537004 U3KQA8 63 aa11.65□□□□□ -0.54
CLIP1-208ENST00000537004 APC2O95996 2303 aa11.65□□□□□ -0.54
CLIP1-208ENST00000537004 LOC100653049A0A140TA62 436 aa11.65□□□□□ -0.54
CLIP1-208ENST00000537004 CCDC189A1A4V9 331 aa11.65□□□□□ -0.54
CLIP1-208ENST00000537004 H3BM21 787 aa11.65□□□□□ -0.54
CLIP1-208ENST00000537004 SLC22A2O15244 555 aa11.65□□□□□ -0.54
CLIP1-208ENST00000537004 ENTPD5O75356 428 aa11.65□□□□□ -0.54
CLIP1-208ENST00000537004 KRT34O76011 436 aa11.65□□□□□ -0.54
CLIP1-208ENST00000537004 CYP2A6P11509 494 aaPredicted RBP11.65□□□□□ -0.54
CLIP1-208ENST00000537004 PIK3R1P27986 724 aa11.65□□□□□ -0.54
CLIP1-208ENST00000537004 TRIM23P36406 574 aa11.65□□□□□ -0.54
CLIP1-208ENST00000537004 SRP54P61011 504 aaKnown RBP11.65□□□□□ -0.54
CLIP1-208ENST00000537004 SH3BP2P78314 561 aa11.65□□□□□ -0.54
CLIP1-208ENST00000537004 DAB2P98082 770 aa11.65□□□□□ -0.54
CLIP1-208ENST00000537004 GPR33Q49SQ1 333 aa11.65□□□□□ -0.54
CLIP1-208ENST00000537004 WLSQ5T9L3 541 aa11.65□□□□□ -0.54
CLIP1-208ENST00000537004 LYPLAL1Q5VWZ2 237 aa11.65□□□□□ -0.54
CLIP1-208ENST00000537004 CLEC6AQ6EIG7 209 aa11.65□□□□□ -0.54
CLIP1-208ENST00000537004 NXPE1Q8N323 547 aa11.65□□□□□ -0.54
CLIP1-208ENST00000537004 GPR26Q8NDV2 337 aa11.65□□□□□ -0.54
CLIP1-208ENST00000537004 CEP70Q8NHQ1 597 aa11.65□□□□□ -0.54
CLIP1-208ENST00000537004 NAT14Q8WUY8 206 aa11.65□□□□□ -0.54
CLIP1-208ENST00000537004 OR1E3Q8WZA6 343 aa11.65□□□□□ -0.54
CLIP1-208ENST00000537004 WDR26Q9H7D7 661 aa11.65□□□□□ -0.54
CLIP1-208ENST00000537004 NLGN3Q9NZ94 848 aa11.65□□□□□ -0.54
CLIP1-208ENST00000537004 KMT2BQ9UMN6 2715 aaPredicted RBP11.65□□□□□ -0.55
CLIP1-208ENST00000537004 ASXL3Q9C0F0 2248 aa11.64□□□□□ -0.55
CLIP1-208ENST00000537004 YY2O15391 372 aa11.64□□□□□ -0.55
CLIP1-208ENST00000537004 KLK8O60259 260 aa11.64□□□□□ -0.55
CLIP1-208ENST00000537004 PEX11AO75192 247 aa11.64□□□□□ -0.55
CLIP1-208ENST00000537004 RFPL3O75679 317 aa11.64□□□□□ -0.55
CLIP1-208ENST00000537004 CDK14O94921 469 aa11.64□□□□□ -0.55
CLIP1-208ENST00000537004 FUCA1P04066 466 aa11.64□□□□□ -0.55
CLIP1-208ENST00000537004 C1SP09871 688 aa11.64□□□□□ -0.55
CLIP1-208ENST00000537004 HTR1BP28222 390 aa11.64□□□□□ -0.55
CLIP1-208ENST00000537004 EEF1DP29692 281 aaKnown RBP11.64□□□□□ -0.55
CLIP1-208ENST00000537004 RAP1GDS1P52306 607 aa11.64□□□□□ -0.55
CLIP1-208ENST00000537004 SLC25A3Q00325 362 aa11.64□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 32.1 ms