RNA–Protein interactions for RNA: ENST00000535915.5

LDLR-203, Transcript of low density lipoprotein receptor, humanhuman

TSL 2 BASIC

Gene LDLR, Length 2,768 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-203ENST00000535915 PNPT1Q8TCS8 783 aaKnown RBP12.83□□□□□ -0.36
LDLR-203ENST00000535915 VOPP1Q96AW1 172 aa12.83□□□□□ -0.36
LDLR-203ENST00000535915 FAM120BQ96EK7 910 aaKnown RBP12.83□□□□□ -0.36
LDLR-203ENST00000535915 BEGAINQ9BUH8 593 aa12.83□□□□□ -0.36
LDLR-203ENST00000535915 PAIP1Q9H074 479 aaKnown RBP12.83□□□□□ -0.36
LDLR-203ENST00000535915 SMG9Q9H0W8 520 aaKnown RBP12.83□□□□□ -0.36
LDLR-203ENST00000535915 CD84Q9UIB8 345 aa12.83□□□□□ -0.36
LDLR-203ENST00000535915 AP3M1Q9Y2T2 418 aa12.83□□□□□ -0.36
LDLR-203ENST00000535915 HELZP42694 1942 aaKnown RBP12.83□□□□□ -0.36
LDLR-203ENST00000535915 A0A1W2PRU2 124 aa12.82□□□□□ -0.36
LDLR-203ENST00000535915 ERN1O75460 977 aaKnown RBP12.82□□□□□ -0.36
LDLR-203ENST00000535915 CREG1O75629 220 aa12.82□□□□□ -0.36
LDLR-203ENST00000535915 UGT2B4P06133 528 aa12.82□□□□□ -0.36
LDLR-203ENST00000535915 TPD52P55327 224 aaPredicted RBP12.82□□□□□ -0.36
LDLR-203ENST00000535915 CLDN8P56748 225 aa12.82□□□□□ -0.36
LDLR-203ENST00000535915 SLC7A9P82251 487 aa12.82□□□□□ -0.36
LDLR-203ENST00000535915 PPP1R8Q12972 351 aaKnown RBP12.82□□□□□ -0.36
LDLR-203ENST00000535915 PON2Q15165 354 aa12.82□□□□□ -0.36
LDLR-203ENST00000535915 CDKL4Q5MAI5 379 aa12.82□□□□□ -0.36
LDLR-203ENST00000535915 ATG9BQ674R7 924 aa12.82□□□□□ -0.36
LDLR-203ENST00000535915 CNKSR3Q6P9H4 555 aa12.82□□□□□ -0.36
LDLR-203ENST00000535915 LRRC70Q7Z2Q7 622 aa12.82□□□□□ -0.36
LDLR-203ENST00000535915 ZNF554Q86TJ5 538 aa12.82□□□□□ -0.36
LDLR-203ENST00000535915 DDX53Q86TM3 631 aaKnown RBP12.82□□□□□ -0.36
LDLR-203ENST00000535915 HOMEZQ8IX15 550 aa12.82□□□□□ -0.36
LDLR-203ENST00000535915 ZBTB8BQ8NAP8 495 aaPredicted RBP12.82□□□□□ -0.36
LDLR-203ENST00000535915 ZNF420Q8TAQ5 688 aaPredicted RBP12.82□□□□□ -0.36
LDLR-203ENST00000535915 ECHDC3Q96DC8 303 aa12.82□□□□□ -0.36
LDLR-203ENST00000535915 CFHR5Q9BXR6 569 aa12.82□□□□□ -0.36
LDLR-203ENST00000535915 OSBPL6Q9BZF3 934 aa12.82□□□□□ -0.36
LDLR-203ENST00000535915 ADNPQ9H2P0 1102 aa12.82□□□□□ -0.36
LDLR-203ENST00000535915 MBD1Q9UIS9 605 aaPredicted RBP12.82□□□□□ -0.36
LDLR-203ENST00000535915 TRBV5-3A0A0A0MS03 114 aa12.82□□□□□ -0.36
LDLR-203ENST00000535915 TRAV19A0A0A6YYK7 116 aa12.82□□□□□ -0.36
LDLR-203ENST00000535915 H3BMQ9 156 aa12.82□□□□□ -0.36
LDLR-203ENST00000535915 ARHGEF15O94989 841 aa12.82□□□□□ -0.36
LDLR-203ENST00000535915 C8GP07360 202 aa12.82□□□□□ -0.36
LDLR-203ENST00000535915 AOAHP28039 575 aa12.82□□□□□ -0.36
LDLR-203ENST00000535915 HLA-FP30511 346 aa12.82□□□□□ -0.36
LDLR-203ENST00000535915 STT3AP46977 705 aa12.82□□□□□ -0.36
LDLR-203ENST00000535915 ZXDCQ2QGD7 858 aaPredicted RBP12.82□□□□□ -0.36
LDLR-203ENST00000535915 SPESP1Q6UW49 350 aa12.82□□□□□ -0.36
LDLR-203ENST00000535915 TMEM26Q6ZUK4 368 aa12.82□□□□□ -0.36
LDLR-203ENST00000535915 THAP5Q7Z6K1 395 aa12.82□□□□□ -0.36
LDLR-203ENST00000535915 C8orf59Q8N0T1 100 aaPredicted RBP12.82□□□□□ -0.36
LDLR-203ENST00000535915 TMEM132CQ8N3T6 1108 aa12.82□□□□□ -0.36
LDLR-203ENST00000535915 DNAJB8Q8NHS0 232 aa12.82□□□□□ -0.36
LDLR-203ENST00000535915 ITCHQ96J02 903 aa12.82□□□□□ -0.36
LDLR-203ENST00000535915 COG8Q96MW5 612 aa12.82□□□□□ -0.36
LDLR-203ENST00000535915 INPP5KQ9BT40 448 aa12.82□□□□□ -0.36
LDLR-203ENST00000535915 SLC12A9Q9BXP2 914 aa12.82□□□□□ -0.36
LDLR-203ENST00000535915 KCNH6Q9H252 994 aa12.82□□□□□ -0.36
LDLR-203ENST00000535915 RMND5AQ9H871 391 aa12.82□□□□□ -0.36
LDLR-203ENST00000535915 HPS4Q9NQG7 708 aa12.82□□□□□ -0.36
LDLR-203ENST00000535915 DCAF13Q9NV06 445 aaKnown RBP12.82□□□□□ -0.36
LDLR-203ENST00000535915 KLHL42Q9P2K6 505 aa12.82□□□□□ -0.36
LDLR-203ENST00000535915 KRT87PA6NCN2 255 aa12.81□□□□□ -0.36
LDLR-203ENST00000535915 C16orf96A6NNT2 1141 aa12.81□□□□□ -0.36
LDLR-203ENST00000535915 FAM220BPB1ANY3 271 aa12.81□□□□□ -0.36
LDLR-203ENST00000535915 LEFTY2O00292 366 aa12.81□□□□□ -0.36
LDLR-203ENST00000535915 LRATO95237 230 aa12.81□□□□□ -0.36
LDLR-203ENST00000535915 ATE1O95260 518 aa12.81□□□□□ -0.36
LDLR-203ENST00000535915 SERPINA1P01009 418 aa12.81□□□□□ -0.36
LDLR-203ENST00000535915 LRG1P02750 347 aa12.81□□□□□ -0.36
LDLR-203ENST00000535915 C1SP09871 688 aa12.81□□□□□ -0.36
LDLR-203ENST00000535915 DCKP27707 260 aa12.81□□□□□ -0.36
LDLR-203ENST00000535915 NRIP1P48552 1158 aa12.81□□□□□ -0.36
LDLR-203ENST00000535915 PTCHD3Q3KNS1 767 aa12.81□□□□□ -0.36
LDLR-203ENST00000535915 TTC23Q5W5X9 447 aa12.81□□□□□ -0.36
LDLR-203ENST00000535915 ZNF773Q6PK81 442 aa12.81□□□□□ -0.36
LDLR-203ENST00000535915 DPY19L3Q6ZPD9 716 aa12.81□□□□□ -0.36
LDLR-203ENST00000535915 GPR149Q86SP6 731 aa12.81□□□□□ -0.36
LDLR-203ENST00000535915 VRK3Q8IV63 474 aa12.81□□□□□ -0.36
LDLR-203ENST00000535915 C10orf111Q8N326 155 aa12.81□□□□□ -0.36
LDLR-203ENST00000535915 TCAIMQ8N3R3 496 aa12.81□□□□□ -0.36
LDLR-203ENST00000535915 SVOPLQ8N434 492 aa12.81□□□□□ -0.36
LDLR-203ENST00000535915 ZNF555Q8NEP9 628 aa12.81□□□□□ -0.36
LDLR-203ENST00000535915 OR52E4Q8NGH9 312 aa12.81□□□□□ -0.36
LDLR-203ENST00000535915 NETO1Q8TDF5 533 aa12.81□□□□□ -0.36
LDLR-203ENST00000535915 RDH12Q96NR8 316 aa12.81□□□□□ -0.36
LDLR-203ENST00000535915 MCCC1Q96RQ3 725 aaPredicted RBP12.81□□□□□ -0.36
LDLR-203ENST00000535915 OSBPL10Q9BXB5 764 aa12.81□□□□□ -0.36
LDLR-203ENST00000535915 BRD9Q9H8M2 597 aa12.81□□□□□ -0.36
LDLR-203ENST00000535915 SERHLQ9NQF3 203 aa12.81□□□□□ -0.36
LDLR-203ENST00000535915 FAM118AQ9NWS6 357 aa12.81□□□□□ -0.36
LDLR-203ENST00000535915 SLC25A13Q9UJS0 675 aa12.81□□□□□ -0.36
LDLR-203ENST00000535915 SH3GLB1Q9Y371 365 aa12.81□□□□□ -0.36
LDLR-203ENST00000535915 A0A096LPI6 279 aa12.81□□□□□ -0.36
LDLR-203ENST00000535915 EIF3FO00303 357 aaPredicted RBP12.81□□□□□ -0.36
LDLR-203ENST00000535915 NRG2O14511 850 aaPredicted RBP12.81□□□□□ -0.36
LDLR-203ENST00000535915 E2F6O75461 281 aa12.81□□□□□ -0.36
LDLR-203ENST00000535915 B3GALT4O96024 378 aa12.81□□□□□ -0.36
LDLR-203ENST00000535915 RETP07949 1114 aa12.81□□□□□ -0.36
LDLR-203ENST00000535915 PRPS2P11908 318 aa12.81□□□□□ -0.36
LDLR-203ENST00000535915 TACR1P25103 407 aa12.81□□□□□ -0.36
LDLR-203ENST00000535915 POLR2IP36954 125 aaKnown RBP12.81□□□□□ -0.36
LDLR-203ENST00000535915 LRIF1Q5T3J3 769 aa12.81□□□□□ -0.36
LDLR-203ENST00000535915 TTC23LQ6PF05 361 aa12.81□□□□□ -0.36
LDLR-203ENST00000535915 ADHFE1Q8IWW8 467 aa12.81□□□□□ -0.36
LDLR-203ENST00000535915 SLC22A15Q8IZD6 547 aa12.81□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 39.4 ms