RNA–Protein interactions for RNA: ENST00000531924.1

VPS28-215, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 3

Gene VPS28, Length 695 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-215ENST00000531924 OR2Y1Q8NGV0 311 aa14.19□□□□□ -0.14
VPS28-215ENST00000531924 TM9SF4Q92544 642 aa14.19□□□□□ -0.14
VPS28-215ENST00000531924 PEX13Q92968 403 aa14.19□□□□□ -0.14
VPS28-215ENST00000531924 PNPLA2Q96AD5 504 aa14.19□□□□□ -0.14
VPS28-215ENST00000531924 GBP5Q96PP8 586 aa14.19□□□□□ -0.14
VPS28-215ENST00000531924 CASS4Q9NQ75 786 aa14.19□□□□□ -0.14
VPS28-215ENST00000531924 EURLQ9NYK6 297 aa14.19□□□□□ -0.14
VPS28-215ENST00000531924 C5AR2Q9P296 337 aa14.19□□□□□ -0.14
VPS28-215ENST00000531924 CIDEBQ9UHD4 219 aa14.19□□□□□ -0.14
VPS28-215ENST00000531924 NAV2Q8IVL1 2488 aa14.19□□□□□ -0.14
VPS28-215ENST00000531924 IQCF5A8MTL0 148 aa14.18□□□□□ -0.14
VPS28-215ENST00000531924 AP3B1O00203 1094 aa14.18□□□□□ -0.14
VPS28-215ENST00000531924 PRMT5O14744 637 aaPredicted RBP14.18□□□□□ -0.14
VPS28-215ENST00000531924 KPNA5O15131 536 aa14.18□□□□□ -0.14
VPS28-215ENST00000531924 CD3EAPO15446 510 aaKnown RBP14.18□□□□□ -0.14
VPS28-215ENST00000531924 NDUFS3O75489 264 aa14.18□□□□□ -0.14
VPS28-215ENST00000531924 SORBS2O94875 1100 aaKnown RBP14.18□□□□□ -0.14
VPS28-215ENST00000531924 S1PR4O95977 384 aa14.18□□□□□ -0.14
VPS28-215ENST00000531924 TPBGLP0DKB5 382 aa14.18□□□□□ -0.14
VPS28-215ENST00000531924 MAGP20916 626 aa14.18□□□□□ -0.14
VPS28-215ENST00000531924 CD9P21926 228 aa14.18□□□□□ -0.14
VPS28-215ENST00000531924 PKLRP30613 574 aa14.18□□□□□ -0.14
VPS28-215ENST00000531924 ARSFP54793 590 aa14.18□□□□□ -0.14
VPS28-215ENST00000531924 ACVR1Q04771 509 aa14.18□□□□□ -0.14
VPS28-215ENST00000531924 ZC3H12BQ5HYM0 836 aaKnown RBP14.18□□□□□ -0.14
VPS28-215ENST00000531924 PCID2Q5JVF3 399 aa14.18□□□□□ -0.14
VPS28-215ENST00000531924 DCAF10Q5QP82 559 aa14.18□□□□□ -0.14
VPS28-215ENST00000531924 TTLL10Q6ZVT0 673 aa14.18□□□□□ -0.14
VPS28-215ENST00000531924 ZNF534Q76KX8 674 aa14.18□□□□□ -0.14
VPS28-215ENST00000531924 LDB1Q86U70 411 aaPredicted RBP14.18□□□□□ -0.14
VPS28-215ENST00000531924 FAM20CQ8IXL6 584 aa14.18□□□□□ -0.14
VPS28-215ENST00000531924 FLVCR1-AS1Q8TAF5 88 aa14.18□□□□□ -0.14
VPS28-215ENST00000531924 ZNF778Q96MU6 729 aa14.18□□□□□ -0.14
VPS28-215ENST00000531924 FOPNLQ96NB1 174 aa14.18□□□□□ -0.14
VPS28-215ENST00000531924 PANX3Q96QZ0 392 aa14.18□□□□□ -0.14
VPS28-215ENST00000531924 SMAD5Q99717 465 aaKnown RBP14.18□□□□□ -0.14
VPS28-215ENST00000531924 RAB11FIP5Q9BXF6 653 aa14.18□□□□□ -0.14
VPS28-215ENST00000531924 P4HTMQ9NXG6 502 aa14.18□□□□□ -0.14
VPS28-215ENST00000531924 GNPTGQ9UJJ9 305 aa14.18□□□□□ -0.14
VPS28-215ENST00000531924 KLHL20Q9Y2M5 609 aa14.18□□□□□ -0.14
VPS28-215ENST00000531924 MRFAP1Q9Y605 127 aa14.18□□□□□ -0.14
VPS28-215ENST00000531924 DOPEY2Q9Y3R5 2298 aa14.17□□□□□ -0.14
VPS28-215ENST00000531924 PFDN6O15212 129 aa14.17□□□□□ -0.14
VPS28-215ENST00000531924 HCRTR1O43613 425 aa14.17□□□□□ -0.14
VPS28-215ENST00000531924 IPO13O94829 963 aaKnown RBP14.17□□□□□ -0.14
VPS28-215ENST00000531924 PEBP1P30086 187 aaKnown RBP14.17□□□□□ -0.14
VPS28-215ENST00000531924 GABRA4P48169 554 aa14.17□□□□□ -0.14
VPS28-215ENST00000531924 BASP1P80723 227 aaKnown RBP14.17□□□□□ -0.14
VPS28-215ENST00000531924 IRAK1BP1Q5VVH5 260 aa14.17□□□□□ -0.14
VPS28-215ENST00000531924 SLC6A19Q695T7 634 aa14.17□□□□□ -0.14
VPS28-215ENST00000531924 C4orf22Q6V702 233 aa14.17□□□□□ -0.14
VPS28-215ENST00000531924 OTOAQ7RTW8 1153 aa14.17□□□□□ -0.14
VPS28-215ENST00000531924 PRUNE1Q86TP1 453 aa14.17□□□□□ -0.14
VPS28-215ENST00000531924 VRK3Q8IV63 474 aa14.17□□□□□ -0.14
VPS28-215ENST00000531924 KRT222Q8N1A0 295 aa14.17□□□□□ -0.14
VPS28-215ENST00000531924 GALNT16Q8N428 558 aa14.17□□□□□ -0.14
VPS28-215ENST00000531924 TTC29Q8NA56 475 aaPredicted RBP14.17□□□□□ -0.14
VPS28-215ENST00000531924 OR2L8Q8NGY9 312 aa14.17□□□□□ -0.14
VPS28-215ENST00000531924 PSMG3-AS1Q96PY0 264 aa14.17□□□□□ -0.14
VPS28-215ENST00000531924 ILKAPQ9H0C8 392 aaPredicted RBP14.17□□□□□ -0.14
VPS28-215ENST00000531924 ATP13A2Q9NQ11 1180 aa14.17□□□□□ -0.14
VPS28-215ENST00000531924 CHRAC1Q9NRG0 131 aa14.17□□□□□ -0.14
VPS28-215ENST00000531924 BFARQ9NZS9 450 aa14.17□□□□□ -0.14
VPS28-215ENST00000531924 TTC7AQ9ULT0 858 aaPredicted RBP14.17□□□□□ -0.14
VPS28-215ENST00000531924 A0A1B0GX78 115 aa14.16□□□□□ -0.14
VPS28-215ENST00000531924 H3BMH7 237 aa14.16□□□□□ -0.14
VPS28-215ENST00000531924 RASGRF2O14827 1237 aa14.16□□□□□ -0.14
VPS28-215ENST00000531924 GPC4O75487 556 aa14.16□□□□□ -0.14
VPS28-215ENST00000531924 SLCO2B1O94956 709 aa14.16□□□□□ -0.14
VPS28-215ENST00000531924 CTSBP07858 339 aa14.16□□□□□ -0.14
VPS28-215ENST00000531924 ZSCAN5DPP0CG00 497 aa14.16□□□□□ -0.14
VPS28-215ENST00000531924 AOAHP28039 575 aa14.16□□□□□ -0.14
VPS28-215ENST00000531924 CDC25BP30305 580 aa14.16□□□□□ -0.14
VPS28-215ENST00000531924 RPL22P35268 128 aaKnown RBP14.16□□□□□ -0.14
VPS28-215ENST00000531924 GRIA3P42263 894 aa14.16□□□□□ -0.14
VPS28-215ENST00000531924 NPY2RP49146 381 aa14.16□□□□□ -0.14
VPS28-215ENST00000531924 SEMA3AQ14563 771 aa14.16□□□□□ -0.14
VPS28-215ENST00000531924 GRM7Q14831 915 aa14.16□□□□□ -0.14
VPS28-215ENST00000531924 MYBPC3Q14896 1274 aa14.16□□□□□ -0.14
VPS28-215ENST00000531924 CCNG2Q16589 344 aa14.16□□□□□ -0.14
VPS28-215ENST00000531924 C4orf17Q53FE4 359 aa14.16□□□□□ -0.14
VPS28-215ENST00000531924 PRR30Q53SZ7 412 aaPredicted RBP14.16□□□□□ -0.14
VPS28-215ENST00000531924 TCTE1Q5JU00 501 aa14.16□□□□□ -0.14
VPS28-215ENST00000531924 SDCCAG8Q86SQ7 713 aaPredicted RBP14.16□□□□□ -0.14
VPS28-215ENST00000531924 LRRC6Q86X45 466 aa14.16□□□□□ -0.14
VPS28-215ENST00000531924 IQCKQ8N0W5 287 aa14.16□□□□□ -0.14
VPS28-215ENST00000531924 MPP5Q8N3R9 675 aa14.16□□□□□ -0.14
VPS28-215ENST00000531924 ZADH2Q8N4Q0 377 aa14.16□□□□□ -0.14
VPS28-215ENST00000531924 RBMXL3Q8N7X1 1067 aaKnown RBP14.16□□□□□ -0.14
VPS28-215ENST00000531924 LINC01555Q8NAE3 123 aa14.16□□□□□ -0.14
VPS28-215ENST00000531924 MAIP1Q8WWC4 291 aa14.16□□□□□ -0.14
VPS28-215ENST00000531924 RAD51AP1Q96B01 352 aa14.16□□□□□ -0.14
VPS28-215ENST00000531924 VPS50Q96JG6 964 aa14.16□□□□□ -0.14
VPS28-215ENST00000531924 IL17FQ96PD4 163 aa14.16□□□□□ -0.14
VPS28-215ENST00000531924 SELENOSQ9BQE4 189 aa14.16□□□□□ -0.14
VPS28-215ENST00000531924 IL22Q9GZX6 179 aa14.16□□□□□ -0.14
VPS28-215ENST00000531924 MARCH4Q9P2E8 410 aaPredicted RBP14.16□□□□□ -0.14
VPS28-215ENST00000531924 CDC23Q9UJX2 597 aa14.16□□□□□ -0.14
VPS28-215ENST00000531924 B3GNT3Q9Y2A9 372 aa14.16□□□□□ -0.14
VPS28-215ENST00000531924 FKBP9O95302 570 aa14.15□□□□□ -0.14
Retrieved 100 of 20,778 RNA–protein pairs in 38.3 ms