RNA–Protein interactions for RNA: ENST00000526553.5

CD44-223, Transcript of CD44 molecule (Indian blood group), human

TSL 4

Gene CD44, Length 571 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CD44-223	ENST00000526553	SNTB1	Q13884	538 aa	Known RBP	4.16	□□□□□ -1.74
CD44-223	ENST00000526553	TEAD2	Q15562	447 aa		4.16	□□□□□ -1.74
CD44-223	ENST00000526553	TMEM211	Q6ICI0	200 aa		4.16	□□□□□ -1.74
CD44-223	ENST00000526553	GALNTL5	Q7Z4T8	443 aa		4.16	□□□□□ -1.74
CD44-223	ENST00000526553	TMEM173	Q86WV6	379 aa	Predicted RBP	4.16	□□□□□ -1.74
CD44-223	ENST00000526553	MAPKAPK5-AS1	Q8N8E1	139 aa		4.16	□□□□□ -1.74
CD44-223	ENST00000526553	OR10S1	Q8NGN2	331 aa		4.16	□□□□□ -1.74
CD44-223	ENST00000526553	IRGQ	Q8WZA9	623 aa		4.16	□□□□□ -1.74
CD44-223	ENST00000526553	RMDN1	Q96DB5	314 aa		4.16	□□□□□ -1.74
CD44-223	ENST00000526553	WBP1	Q96G27	269 aa		4.16	□□□□□ -1.74
CD44-223	ENST00000526553	GMPPA	Q96IJ6	420 aa	Predicted RBP	4.16	□□□□□ -1.74
CD44-223	ENST00000526553	CFAP57	Q96MR6	1250 aa		4.16	□□□□□ -1.74
CD44-223	ENST00000526553	DGAT2	Q96PD7	388 aa		4.16	□□□□□ -1.74
CD44-223	ENST00000526553	RAB3IP	Q96QF0	476 aa	Predicted RBP	4.16	□□□□□ -1.74
CD44-223	ENST00000526553	OPRPN	Q99935	248 aa	Predicted RBP	4.16	□□□□□ -1.74
CD44-223	ENST00000526553	PFDN4	Q9NQP4	134 aa		4.16	□□□□□ -1.74
CD44-223	ENST00000526553	SDR39U1	Q9NRG7	319 aa	Predicted RBP	4.16	□□□□□ -1.74
CD44-223	ENST00000526553	ATAD3A	Q9NVI7	634 aa		4.16	□□□□□ -1.74
CD44-223	ENST00000526553	TUBE1	Q9UJT0	475 aa		4.16	□□□□□ -1.74
CD44-223	ENST00000526553	MRPS28	Q9Y2Q9	187 aa	Known RBP	4.16	□□□□□ -1.74
CD44-223	ENST00000526553	PYGO1	Q9Y3Y4	419 aa		4.16	□□□□□ -1.74
CD44-223	ENST00000526553	RB1CC1	Q8TDY2	1594 aa		4.15	□□□□□ -1.74
CD44-223	ENST00000526553		A0A087WW49	117 aa		4.15	□□□□□ -1.75
CD44-223	ENST00000526553	FEZF1	A0PJY2	475 aa		4.15	□□□□□ -1.75
CD44-223	ENST00000526553	ARHGEF9	O43307	516 aa		4.15	□□□□□ -1.75
CD44-223	ENST00000526553	ZNF821	O75541	412 aa	Predicted RBP	4.15	□□□□□ -1.75
CD44-223	ENST00000526553	GGPS1	O95749	300 aa		4.15	□□□□□ -1.75
CD44-223	ENST00000526553	BCL10	O95999	233 aa		4.15	□□□□□ -1.75
CD44-223	ENST00000526553	HMBS	P08397	361 aa		4.15	□□□□□ -1.75
CD44-223	ENST00000526553	LUM	P51884	338 aa	Predicted RBP	4.15	□□□□□ -1.75
CD44-223	ENST00000526553	PPP5C	P53041	499 aa		4.15	□□□□□ -1.75
CD44-223	ENST00000526553	CDR2	Q01850	454 aa		4.15	□□□□□ -1.75
CD44-223	ENST00000526553	PPARD	Q03181	441 aa		4.15	□□□□□ -1.75
CD44-223	ENST00000526553	DMPK	Q09013	629 aa		4.15	□□□□□ -1.75
CD44-223	ENST00000526553	COG2	Q14746	738 aa		4.15	□□□□□ -1.75
CD44-223	ENST00000526553	ADAMTSL4-AS1	Q5T5F5	129 aa		4.15	□□□□□ -1.75
CD44-223	ENST00000526553	LCE1F	Q5T754	118 aa		4.15	□□□□□ -1.75
CD44-223	ENST00000526553	IL27RA	Q6UWB1	636 aa		4.15	□□□□□ -1.75
CD44-223	ENST00000526553	ZNF497	Q6ZNH5	498 aa		4.15	□□□□□ -1.75
CD44-223	ENST00000526553	THNSL1	Q8IYQ7	743 aa		4.15	□□□□□ -1.75
CD44-223	ENST00000526553	CFAP206	Q8IYR0	622 aa		4.15	□□□□□ -1.75
CD44-223	ENST00000526553	GPATCH11	Q8N954	259 aa		4.15	□□□□□ -1.75
CD44-223	ENST00000526553	TSPAN14	Q8NG11	270 aa		4.15	□□□□□ -1.75
CD44-223	ENST00000526553	OR2T11	Q8NH01	316 aa		4.15	□□□□□ -1.75
CD44-223	ENST00000526553	MRGPRD	Q8TDS7	321 aa		4.15	□□□□□ -1.75
CD44-223	ENST00000526553	CCDC107	Q8WV48	283 aa		4.15	□□□□□ -1.75
CD44-223	ENST00000526553	HPSE2	Q8WWQ2	592 aa		4.15	□□□□□ -1.75
CD44-223	ENST00000526553	VMP1	Q96GC9	406 aa		4.15	□□□□□ -1.75
CD44-223	ENST00000526553	FNBP1	Q96RU3	617 aa		4.15	□□□□□ -1.75
CD44-223	ENST00000526553	OLFM1	Q99784	485 aa		4.15	□□□□□ -1.75
CD44-223	ENST00000526553	CCDC106	Q9BWC9	280 aa		4.15	□□□□□ -1.75
CD44-223	ENST00000526553	PITPNM3	Q9BZ71	974 aa		4.15	□□□□□ -1.75
CD44-223	ENST00000526553	EQTN	Q9NQ60	294 aa		4.15	□□□□□ -1.75
CD44-223	ENST00000526553	INTS9	Q9NV88	658 aa	Known RBP	4.15	□□□□□ -1.75
CD44-223	ENST00000526553	BARHL2	Q9NY43	387 aa		4.15	□□□□□ -1.75
CD44-223	ENST00000526553	SPHK1	Q9NYA1	384 aa		4.15	□□□□□ -1.75
CD44-223	ENST00000526553	TMEM181	Q9P2C4	612 aa		4.15	□□□□□ -1.75
CD44-223	ENST00000526553	CACNG5	Q9UF02	275 aa		4.15	□□□□□ -1.75
CD44-223	ENST00000526553	TRBC2	A0A5B9	178 aa		4.14	□□□□□ -1.75
CD44-223	ENST00000526553	TMEM221	A6NGB7	291 aa		4.14	□□□□□ -1.75
CD44-223	ENST00000526553	TOMM70	O94826	608 aa		4.14	□□□□□ -1.75
CD44-223	ENST00000526553	RAF1	P04049	648 aa		4.14	□□□□□ -1.75
CD44-223	ENST00000526553	CEBPB	P17676	345 aa		4.14	□□□□□ -1.75
CD44-223	ENST00000526553	MATR3	P43243	847 aa	Known RBP eCLIP	4.14	□□□□□ -1.75
CD44-223	ENST00000526553	MAGEA11	P43364	429 aa		4.14	□□□□□ -1.75
CD44-223	ENST00000526553	BMX	P51813	675 aa		4.14	□□□□□ -1.75
CD44-223	ENST00000526553	TPD52	P55327	224 aa	Predicted RBP	4.14	□□□□□ -1.75
CD44-223	ENST00000526553	B3GALT5-AS1	P59052	145 aa		4.14	□□□□□ -1.75
CD44-223	ENST00000526553	IRX1	P78414	480 aa	Predicted RBP	4.14	□□□□□ -1.75
CD44-223	ENST00000526553	BFSP1	Q12934	665 aa		4.14	□□□□□ -1.75
CD44-223	ENST00000526553	TMEM187	Q14656	261 aa		4.14	□□□□□ -1.75
CD44-223	ENST00000526553	RRS1	Q15050	365 aa	Known RBP	4.14	□□□□□ -1.75
CD44-223	ENST00000526553	ELFN2	Q5R3F8	820 aa		4.14	□□□□□ -1.75
CD44-223	ENST00000526553	RNASEH2B	Q5TBB1	312 aa	Known RBP	4.14	□□□□□ -1.75
CD44-223	ENST00000526553	CYP4A22	Q5TCH4	519 aa		4.14	□□□□□ -1.75
CD44-223	ENST00000526553	CST9LP1	Q5W188	147 aa		4.14	□□□□□ -1.75
CD44-223	ENST00000526553	PSRC1	Q6PGN9	363 aa	Predicted RBP	4.14	□□□□□ -1.75
CD44-223	ENST00000526553	C11orf88	Q6PI97	169 aa		4.14	□□□□□ -1.75
CD44-223	ENST00000526553	PIGZ	Q86VD9	579 aa		4.14	□□□□□ -1.75
CD44-223	ENST00000526553	ARHGAP24	Q8N264	748 aa		4.14	□□□□□ -1.75
CD44-223	ENST00000526553	MARVELD2	Q8N4S9	558 aa		4.14	□□□□□ -1.75
CD44-223	ENST00000526553	VPS33A	Q96AX1	596 aa		4.14	□□□□□ -1.75
CD44-223	ENST00000526553	SPACA9	Q96E40	222 aa	Predicted RBP	4.14	□□□□□ -1.75
CD44-223	ENST00000526553	ARSG	Q96EG1	525 aa		4.14	□□□□□ -1.75
CD44-223	ENST00000526553	PRAC1	Q96KF2	57 aa		4.14	□□□□□ -1.75
CD44-223	ENST00000526553	WNT5B	Q9H1J7	359 aa		4.14	□□□□□ -1.75
CD44-223	ENST00000526553	TBC1D17	Q9HA65	648 aa		4.14	□□□□□ -1.75
CD44-223	ENST00000526553	FGF21	Q9NSA1	209 aa		4.14	□□□□□ -1.75
CD44-223	ENST00000526553	ZDHHC18	Q9NUE0	388 aa		4.14	□□□□□ -1.75
CD44-223	ENST00000526553	GDE1	Q9NZC3	331 aa		4.14	□□□□□ -1.75
CD44-223	ENST00000526553	C5AR2	Q9P296	337 aa		4.14	□□□□□ -1.75
CD44-223	ENST00000526553	B3GAT1	Q9P2W7	334 aa		4.14	□□□□□ -1.75
CD44-223	ENST00000526553	CRNN	Q9UBG3	495 aa	Predicted RBP	4.14	□□□□□ -1.75
CD44-223	ENST00000526553	IL17B	Q9UHF5	180 aa		4.14	□□□□□ -1.75
CD44-223	ENST00000526553	RASAL2	Q9UJF2	1139 aa		4.14	□□□□□ -1.75
CD44-223	ENST00000526553	RIPK3	Q9Y572	518 aa		4.14	□□□□□ -1.75
CD44-223	ENST00000526553		A0A1B0GU03	582 aa		4.13	□□□□□ -1.75
CD44-223	ENST00000526553	KLF11	O14901	512 aa		4.13	□□□□□ -1.75
CD44-223	ENST00000526553	CDC123	O75794	336 aa	Predicted RBP	4.13	□□□□□ -1.75
CD44-223	ENST00000526553	FYN	P06241	537 aa		4.13	□□□□□ -1.75

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