RNA–Protein interactions for RNA: ENST00000525688.5

CD44-220, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 5

Gene CD44, Length 560 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-220ENST00000525688 TMCO6Q96DC7 493 aa4.66□□□□□ -1.66
CD44-220ENST00000525688 MRPL38Q96DV4 380 aaKnown RBP4.66□□□□□ -1.66
CD44-220ENST00000525688 SGF29Q96ES7 293 aa4.66□□□□□ -1.66
CD44-220ENST00000525688 RRNAD1Q96FB5 475 aaKnown RBP4.66□□□□□ -1.66
CD44-220ENST00000525688 ERO1AQ96HE7 468 aa4.66□□□□□ -1.66
CD44-220ENST00000525688 EPSTI1Q96J88 318 aa4.66□□□□□ -1.66
CD44-220ENST00000525688 HARBI1Q96MB7 349 aa4.66□□□□□ -1.66
CD44-220ENST00000525688 DGAT2Q96PD7 388 aa4.66□□□□□ -1.66
CD44-220ENST00000525688 GAL3ST4Q96RP7 486 aa4.66□□□□□ -1.66
CD44-220ENST00000525688 GFM1Q96RP9 751 aaKnown RBP4.66□□□□□ -1.66
CD44-220ENST00000525688 SRSF8Q9BRL6 282 aaKnown RBP4.66□□□□□ -1.66
CD44-220ENST00000525688 SLC25A23Q9BV35 468 aa4.66□□□□□ -1.66
CD44-220ENST00000525688 TEX13AQ9BXU3 409 aaPredicted RBP4.66□□□□□ -1.66
CD44-220ENST00000525688 MRPL1Q9BYD6 325 aaKnown RBP4.66□□□□□ -1.66
CD44-220ENST00000525688 NFKBIZQ9BYH8 718 aa4.66□□□□□ -1.66
CD44-220ENST00000525688 LRRCC1Q9C099 1032 aa4.66□□□□□ -1.66
CD44-220ENST00000525688 DENND2DQ9H6A0 471 aaPredicted RBP4.66□□□□□ -1.66
CD44-220ENST00000525688 ESRP2Q9H6T0 727 aaKnown RBP4.66□□□□□ -1.66
CD44-220ENST00000525688 FANCEQ9HB96 536 aa4.66□□□□□ -1.66
CD44-220ENST00000525688 SOHLH2Q9NX45 425 aa4.66□□□□□ -1.66
CD44-220ENST00000525688 QPCTLQ9NXS2 382 aa4.66□□□□□ -1.66
CD44-220ENST00000525688 HEY2Q9UBP5 337 aa4.66□□□□□ -1.66
CD44-220ENST00000525688 RCOR1Q9UKL0 485 aa4.66□□□□□ -1.66
CD44-220ENST00000525688 PPIEQ9UNP9 301 aaKnown RBP4.66□□□□□ -1.66
CD44-220ENST00000525688 KCNK7Q9Y2U2 307 aa4.66□□□□□ -1.66
CD44-220ENST00000525688 SNX9Q9Y5X1 595 aa4.66□□□□□ -1.66
CD44-220ENST00000525688 RGPD1P0DJD0 1748 aa4.66□□□□□ -1.66
CD44-220ENST00000525688 TNS1Q9HBL0 1735 aaKnown RBP4.66□□□□□ -1.66
CD44-220ENST00000525688 PLEKHG2Q9H7P9 1386 aa4.65□□□□□ -1.66
CD44-220ENST00000525688 XKRY2A2RUG3 117 aa4.65□□□□□ -1.67
CD44-220ENST00000525688 ENO4A6NNW6 628 aa4.65□□□□□ -1.67
CD44-220ENST00000525688 CXCL11O14625 94 aa4.65□□□□□ -1.67
CD44-220ENST00000525688 DIAPH2O60879 1101 aa4.65□□□□□ -1.67
CD44-220ENST00000525688 MITFO75030 526 aaPredicted RBP4.65□□□□□ -1.67
CD44-220ENST00000525688 ZC3H11AO75152 810 aaKnown RBP eCLIP4.65□□□□□ -1.67
CD44-220ENST00000525688 NDUFB8O95169 186 aa4.65□□□□□ -1.67
CD44-220ENST00000525688 FGBP02675 491 aa4.65□□□□□ -1.67
CD44-220ENST00000525688 HIST1H2ABP04908 130 aa4.65□□□□□ -1.67
CD44-220ENST00000525688 TPM1P09493 284 aa4.65□□□□□ -1.67
CD44-220ENST00000525688 POLR2MP0CAP2 368 aa4.65□□□□□ -1.67
CD44-220ENST00000525688 CYP19A1P11511 503 aaPredicted RBP4.65□□□□□ -1.67
CD44-220ENST00000525688 SRCP12931 536 aa4.65□□□□□ -1.67
CD44-220ENST00000525688 DDX5P17844 614 aaKnown RBP4.65□□□□□ -1.67
CD44-220ENST00000525688 HIST1H2ADP20671 130 aa4.65□□□□□ -1.67
CD44-220ENST00000525688 JAK1P23458 1154 aa4.65□□□□□ -1.67
CD44-220ENST00000525688 MDH1P40925 334 aaKnown RBP4.65□□□□□ -1.67
CD44-220ENST00000525688 METAP2P50579 478 aaKnown RBP eCLIP4.65□□□□□ -1.67
CD44-220ENST00000525688 CAPZA1P52907 286 aa4.65□□□□□ -1.67
CD44-220ENST00000525688 PNLIPRP2P54317 469 aa4.65□□□□□ -1.67
CD44-220ENST00000525688 TAS2R40P59535 323 aa4.65□□□□□ -1.67
CD44-220ENST00000525688 KIAA1024LP59773 190 aa4.65□□□□□ -1.67
CD44-220ENST00000525688 ZP1P60852 638 aa4.65□□□□□ -1.67
CD44-220ENST00000525688 ASIC1P78348 528 aa4.65□□□□□ -1.67
CD44-220ENST00000525688 MRPS34P82930 218 aaKnown RBP4.65□□□□□ -1.67
CD44-220ENST00000525688 SRSF4Q08170 494 aaKnown RBP4.65□□□□□ -1.67
CD44-220ENST00000525688 TRDNQ13061 729 aa4.65□□□□□ -1.67
CD44-220ENST00000525688 GPM6BQ13491 265 aa4.65□□□□□ -1.67
CD44-220ENST00000525688 NEDD9Q14511 834 aa4.65□□□□□ -1.67
CD44-220ENST00000525688 RARS2Q5T160 578 aaKnown RBP4.65□□□□□ -1.67
CD44-220ENST00000525688 STXBP5Q5T5C0 1151 aa4.65□□□□□ -1.67
CD44-220ENST00000525688 MORN5Q5VZ52 161 aa4.65□□□□□ -1.67
CD44-220ENST00000525688 ANKRD54Q6NXT1 300 aa4.65□□□□□ -1.67
CD44-220ENST00000525688 MFSD7Q6UXD7 560 aa4.65□□□□□ -1.67
CD44-220ENST00000525688 PQLC2Q6ZP29 291 aa4.65□□□□□ -1.67
CD44-220ENST00000525688 CLEC17AQ6ZS10 378 aa4.65□□□□□ -1.67
CD44-220ENST00000525688 HIST3H2AQ7L7L0 130 aa4.65□□□□□ -1.67
CD44-220ENST00000525688 BNIPLQ7Z465 357 aa4.65□□□□□ -1.67
CD44-220ENST00000525688 SPATA19Q7Z5L4 167 aa4.65□□□□□ -1.67
CD44-220ENST00000525688 KBTBD6Q86V97 674 aa4.65□□□□□ -1.67
CD44-220ENST00000525688 CEP57Q86XR8 500 aa4.65□□□□□ -1.67
CD44-220ENST00000525688 MMP21Q8N119 569 aa4.65□□□□□ -1.67
CD44-220ENST00000525688 ARL14Q8N4G2 192 aa4.65□□□□□ -1.67
CD44-220ENST00000525688 NIPA2Q8N8Q9 360 aa4.65□□□□□ -1.67
CD44-220ENST00000525688 FAM133AQ8N9E0 248 aa4.65□□□□□ -1.67
CD44-220ENST00000525688 XXYLT1Q8NBI6 393 aa4.65□□□□□ -1.67
CD44-220ENST00000525688 NEK11Q8NG66 645 aa4.65□□□□□ -1.67
CD44-220ENST00000525688 PSMA8Q8TAA3 256 aa4.65□□□□□ -1.67
CD44-220ENST00000525688 TRPC4APQ8TEL6 797 aa4.65□□□□□ -1.67
CD44-220ENST00000525688 NRBF2Q96F24 287 aa4.65□□□□□ -1.67
CD44-220ENST00000525688 ACOX2Q99424 681 aa4.65□□□□□ -1.67
CD44-220ENST00000525688 MGME1Q9BQP7 344 aa4.65□□□□□ -1.67
CD44-220ENST00000525688 CCDC106Q9BWC9 280 aa4.65□□□□□ -1.67
CD44-220ENST00000525688 POLDIP3Q9BY77 421 aaKnown RBP4.65□□□□□ -1.67
CD44-220ENST00000525688 WDR26Q9H7D7 661 aa4.65□□□□□ -1.67
CD44-220ENST00000525688 CISD1Q9NZ45 108 aaKnown RBP4.65□□□□□ -1.67
CD44-220ENST00000525688 CDH7Q9ULB5 785 aa4.65□□□□□ -1.67
CD44-220ENST00000525688 PADI1Q9ULC6 663 aa4.65□□□□□ -1.67
CD44-220ENST00000525688 CMAHPQ9Y471 501 aa4.65□□□□□ -1.67
CD44-220ENST00000525688 HS3ST3B1Q9Y662 390 aa4.65□□□□□ -1.67
CD44-220ENST00000525688 SHANK3Q9BYB0 1731 aa4.65□□□□□ -1.67
CD44-220ENST00000525688 SBF2Q86WG5 1849 aa4.65□□□□□ -1.67
CD44-220ENST00000525688 PARD3Q8TEW0 1356 aa4.65□□□□□ -1.67
CD44-220ENST00000525688 COL3A1P02461 1466 aaPredicted RBP4.64□□□□□ -1.67
CD44-220ENST00000525688 TMEM272A0A1B0GTI8 110 aa4.64□□□□□ -1.67
CD44-220ENST00000525688 A0A1W2PR77 199 aa4.64□□□□□ -1.67
CD44-220ENST00000525688 TCRBV21S2A2A0A5A6 115 aa4.64□□□□□ -1.67
CD44-220ENST00000525688 EME2A4GXA9 379 aaPredicted RBP4.64□□□□□ -1.67
CD44-220ENST00000525688 TO15178 435 aa4.64□□□□□ -1.67
CD44-220ENST00000525688 CYTIPO60759 359 aa4.64□□□□□ -1.67
CD44-220ENST00000525688 SOX30O94993 753 aa4.64□□□□□ -1.67
Retrieved 100 of 20,778 RNA–protein pairs in 22.2 ms