RNA–Protein interactions for RNA: ENST00000525348.1

CD44-217, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 568 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-217ENST00000525348 KCNK15Q9H427 330 aa3.53□□□□□ -1.84
CD44-217ENST00000525348 PLCXD1Q9NUJ7 323 aa3.53□□□□□ -1.84
CD44-217ENST00000525348 QPCTLQ9NXS2 382 aa3.53□□□□□ -1.84
CD44-217ENST00000525348 SPATA7Q9P0W8 599 aa3.53□□□□□ -1.84
CD44-217ENST00000525348 CLIP2Q9UDT6 1046 aa3.53□□□□□ -1.84
CD44-217ENST00000525348 TUBE1Q9UJT0 475 aa3.53□□□□□ -1.84
CD44-217ENST00000525348 OSGIN1Q9UJX0 560 aa3.53□□□□□ -1.84
CD44-217ENST00000525348 ZNF215Q9UL58 517 aaPredicted RBP3.53□□□□□ -1.84
CD44-217ENST00000525348 MTUS1Q9ULD2 1270 aa3.53□□□□□ -1.84
CD44-217ENST00000525348 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP3.53□□□□□ -1.84
CD44-217ENST00000525348 MMP24Q9Y5R2 645 aa3.53□□□□□ -1.84
CD44-217ENST00000525348 IKBKGQ9Y6K9 419 aa3.53□□□□□ -1.84
CD44-217ENST00000525348 CFTRP13569 1480 aa3.53□□□□□ -1.84
CD44-217ENST00000525348 PBRM1Q86U86 1689 aa3.52□□□□□ -1.85
CD44-217ENST00000525348 KANK1Q14678 1352 aa3.52□□□□□ -1.85
CD44-217ENST00000525348 PIK3R4Q99570 1358 aa3.52□□□□□ -1.85
CD44-217ENST00000525348 NINLQ9Y2I6 1382 aa3.52□□□□□ -1.85
CD44-217ENST00000525348 ITIH6Q6UXX5 1313 aa3.52□□□□□ -1.85
CD44-217ENST00000525348 DIP2BQ9P265 1576 aa3.52□□□□□ -1.85
CD44-217ENST00000525348 IGHV4-4A0A075B6R2 117 aa3.52□□□□□ -1.85
CD44-217ENST00000525348 LOC101059948A0A1B0GTJ6 334 aa3.52□□□□□ -1.85
CD44-217ENST00000525348 A0A1W2PQ09 198 aa3.52□□□□□ -1.85
CD44-217ENST00000525348 A0A1W2PRQ8 180 aa3.52□□□□□ -1.85
CD44-217ENST00000525348 SH2B2O14492 632 aaPredicted RBP3.52□□□□□ -1.85
CD44-217ENST00000525348 GAPDHSO14556 408 aaPredicted RBP3.52□□□□□ -1.85
CD44-217ENST00000525348 ADAMDEC1O15204 470 aa3.52□□□□□ -1.85
CD44-217ENST00000525348 ARHGEF9O43307 516 aa3.52□□□□□ -1.85
CD44-217ENST00000525348 ZWINTO95229 277 aa3.52□□□□□ -1.85
CD44-217ENST00000525348 HSP90AB1P08238 724 aaKnown RBP3.52□□□□□ -1.85
CD44-217ENST00000525348 HMBSP08397 361 aa3.52□□□□□ -1.85
CD44-217ENST00000525348 CA4P22748 312 aa3.52□□□□□ -1.85
CD44-217ENST00000525348 GABRA5P31644 462 aa3.52□□□□□ -1.85
CD44-217ENST00000525348 BMXP51813 675 aa3.52□□□□□ -1.85
CD44-217ENST00000525348 RWDD2BP57060 319 aa3.52□□□□□ -1.85
CD44-217ENST00000525348 PSMC6P62333 389 aa3.52□□□□□ -1.85
CD44-217ENST00000525348 CX3CL1P78423 397 aa3.52□□□□□ -1.85
CD44-217ENST00000525348 KCNJ10P78508 379 aa3.52□□□□□ -1.85
CD44-217ENST00000525348 MC1RQ01726 317 aa3.52□□□□□ -1.85
CD44-217ENST00000525348 CREB5Q02930 508 aa3.52□□□□□ -1.85
CD44-217ENST00000525348 PRPF4BQ13523 1007 aaKnown RBP3.52□□□□□ -1.85
CD44-217ENST00000525348 KRT33BQ14525 404 aa3.52□□□□□ -1.85
CD44-217ENST00000525348 TOMM20Q15388 145 aa3.52□□□□□ -1.85
CD44-217ENST00000525348 TAF7Q15545 349 aaPredicted RBP3.52□□□□□ -1.85
CD44-217ENST00000525348 KRT71Q3SY84 523 aa3.52□□□□□ -1.85
CD44-217ENST00000525348 MDH1BQ5I0G3 518 aa3.52□□□□□ -1.85
CD44-217ENST00000525348 SPDYCQ5MJ68 293 aa3.52□□□□□ -1.85
CD44-217ENST00000525348 HHATQ5VTY9 493 aa3.52□□□□□ -1.85
CD44-217ENST00000525348 TEX38Q6PEX7 206 aa3.52□□□□□ -1.85
CD44-217ENST00000525348 UNC5DQ6UXZ4 953 aa3.52□□□□□ -1.85
CD44-217ENST00000525348 Q6ZSR9 355 aa3.52□□□□□ -1.85
CD44-217ENST00000525348 MCM10Q7L590 875 aa3.52□□□□□ -1.85
CD44-217ENST00000525348 TMEM110Q86TL2 294 aa3.52□□□□□ -1.85
CD44-217ENST00000525348 ADIPOR2Q86V24 386 aa3.52□□□□□ -1.85
CD44-217ENST00000525348 EFCAB13Q8IY85 973 aa3.52□□□□□ -1.85
CD44-217ENST00000525348 SLC7A5P1Q8MH63 180 aa3.52□□□□□ -1.85
CD44-217ENST00000525348 ARL6IP6Q8N6S5 226 aa3.52□□□□□ -1.85
CD44-217ENST00000525348 ZNF611Q8N823 705 aa3.52□□□□□ -1.85
CD44-217ENST00000525348 OR5M8Q8NGP6 311 aa3.52□□□□□ -1.85
CD44-217ENST00000525348 OR13J1Q8NGT2 312 aa3.52□□□□□ -1.85
CD44-217ENST00000525348 OR2T6Q8NHC8 308 aa3.52□□□□□ -1.85
CD44-217ENST00000525348 HPSE2Q8WWQ2 592 aa3.52□□□□□ -1.85
CD44-217ENST00000525348 RMDN2Q96LZ7 410 aa3.52□□□□□ -1.85
CD44-217ENST00000525348 GSDMAQ96QA5 445 aa3.52□□□□□ -1.85
CD44-217ENST00000525348 BARD1Q99728 777 aaKnown RBP3.52□□□□□ -1.85
CD44-217ENST00000525348 SLC39A3Q9BRY0 314 aa3.52□□□□□ -1.85
CD44-217ENST00000525348 TRIM7Q9C029 511 aa3.52□□□□□ -1.85
CD44-217ENST00000525348 SPATC1LQ9H0A9 340 aa3.52□□□□□ -1.85
CD44-217ENST00000525348 ABCG4Q9H172 646 aa3.52□□□□□ -1.85
CD44-217ENST00000525348 GHITMQ9H3K2 345 aa3.52□□□□□ -1.85
CD44-217ENST00000525348 BLOC1S4Q9NUP1 217 aa3.52□□□□□ -1.85
CD44-217ENST00000525348 ZNF701Q9NV72 531 aaPredicted RBP3.52□□□□□ -1.85
CD44-217ENST00000525348 TAB2Q9NYJ8 693 aa3.52□□□□□ -1.85
CD44-217ENST00000525348 KLHL8Q9P2G9 620 aaPredicted RBP3.52□□□□□ -1.85
CD44-217ENST00000525348 ASIC3Q9UHC3 531 aa3.52□□□□□ -1.85
CD44-217ENST00000525348 ZNF148Q9UQR1 794 aa3.52□□□□□ -1.85
CD44-217ENST00000525348 TMEM94Q12767 1356 aa3.51□□□□□ -1.85
CD44-217ENST00000525348 DNMBPQ6XZF7 1577 aa3.51□□□□□ -1.85
CD44-217ENST00000525348 A0A087WW49 117 aa3.51□□□□□ -1.85
CD44-217ENST00000525348 A0A0B4J203 849 aa3.51□□□□□ -1.85
CD44-217ENST00000525348 HYKKA2RU49 373 aa3.51□□□□□ -1.85
CD44-217ENST00000525348 TMCO5BA8MYB1 307 aa3.51□□□□□ -1.85
CD44-217ENST00000525348 B4DLN1 442 aa3.51□□□□□ -1.85
CD44-217ENST00000525348 CTDSP2O14595 271 aa3.51□□□□□ -1.85
CD44-217ENST00000525348 XRCC3O43542 346 aa3.51□□□□□ -1.85
CD44-217ENST00000525348 ZBED4O75132 1171 aa3.51□□□□□ -1.85
CD44-217ENST00000525348 E2F6O75461 281 aa3.51□□□□□ -1.85
CD44-217ENST00000525348 PIGNO95427 931 aa3.51□□□□□ -1.85
CD44-217ENST00000525348 EDN1P05305 212 aa3.51□□□□□ -1.85
CD44-217ENST00000525348 GPIP06744 558 aa3.51□□□□□ -1.85
CD44-217ENST00000525348 HSPA5P11021 654 aaKnown RBP3.51□□□□□ -1.85
CD44-217ENST00000525348 GLULP15104 373 aa3.51□□□□□ -1.85
CD44-217ENST00000525348 TRIM21P19474 475 aaKnown RBP3.51□□□□□ -1.85
CD44-217ENST00000525348 EFNA1P20827 205 aaPredicted RBP3.51□□□□□ -1.85
CD44-217ENST00000525348 HOXD13P35453 343 aa3.51□□□□□ -1.85
CD44-217ENST00000525348 TNNT3P45378 269 aaPredicted RBP3.51□□□□□ -1.85
CD44-217ENST00000525348 MRPL12P52815 198 aaKnown RBP3.51□□□□□ -1.85
CD44-217ENST00000525348 GEMIN4P57678 1058 aaKnown RBP3.51□□□□□ -1.85
CD44-217ENST00000525348 BPIFB3P59826 476 aa3.51□□□□□ -1.85
CD44-217ENST00000525348 COX10Q12887 443 aa3.51□□□□□ -1.85
CD44-217ENST00000525348 RABL6Q3YEC7 729 aaPredicted RBP3.51□□□□□ -1.85
Retrieved 100 of 20,778 RNA–protein pairs in 37.5 ms