RNA–Protein interactions for RNA: ENST00000514901.5

NUP54-216, Transcript of nucleoporin 54, humanhuman

TSL 3

Gene NUP54, Length 500 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-216ENST00000514901 FAM153CQ494X1 144 aa13.8□□□□□ -0.2
NUP54-216ENST00000514901 TMTC4Q5T4D3 741 aa13.8□□□□□ -0.2
NUP54-216ENST00000514901 TAOK1Q7L7X3 1001 aa13.8□□□□□ -0.2
NUP54-216ENST00000514901 BPHLQ86WA6 291 aaPredicted RBP13.8□□□□□ -0.2
NUP54-216ENST00000514901 CEP97Q8IW35 865 aa13.8□□□□□ -0.2
NUP54-216ENST00000514901 SLC44A1Q8WWI5 657 aa13.8□□□□□ -0.2
NUP54-216ENST00000514901 SLC41A2Q96JW4 573 aa13.8□□□□□ -0.2
NUP54-216ENST00000514901 HIST1H2AHQ96KK5 128 aa13.8□□□□□ -0.2
NUP54-216ENST00000514901 CCDC138Q96M89 665 aa13.8□□□□□ -0.2
NUP54-216ENST00000514901 OR2A14Q96R47 310 aa13.8□□□□□ -0.2
NUP54-216ENST00000514901 TAAR9Q96RI9 348 aa13.8□□□□□ -0.2
NUP54-216ENST00000514901 PKP4Q99569 1192 aa13.8□□□□□ -0.2
NUP54-216ENST00000514901 HIST1H2AJQ99878 128 aa13.8□□□□□ -0.2
NUP54-216ENST00000514901 ZPBPQ9BS86 351 aa13.8□□□□□ -0.2
NUP54-216ENST00000514901 H2AFJQ9BTM1 129 aa13.8□□□□□ -0.2
NUP54-216ENST00000514901 PITPNM3Q9BZ71 974 aa13.8□□□□□ -0.2
NUP54-216ENST00000514901 ASPSCR1Q9BZE9 553 aa13.8□□□□□ -0.2
NUP54-216ENST00000514901 CHRNA10Q9GZZ6 450 aa13.8□□□□□ -0.2
NUP54-216ENST00000514901 PISDQ9UG56 409 aa13.8□□□□□ -0.2
NUP54-216ENST00000514901 NOVA2Q9UNW9 492 aaKnown RBP13.8□□□□□ -0.2
NUP54-216ENST00000514901 PCDHGA7Q9Y5G6 932 aa13.8□□□□□ -0.2
NUP54-216ENST00000514901 IGF2RP11717 2491 aa13.8□□□□□ -0.2
NUP54-216ENST00000514901 ANKRD12Q6UB98 2062 aa13.79□□□□□ -0.2
NUP54-216ENST00000514901 CDRT15L2A8MXV6 281 aa13.79□□□□□ -0.2
NUP54-216ENST00000514901 C1QTNF9BB2RNN3 333 aa13.79□□□□□ -0.2
NUP54-216ENST00000514901 NVLO15381 856 aaKnown RBP13.79□□□□□ -0.2
NUP54-216ENST00000514901 FAM155BO75949 473 aa13.79□□□□□ -0.2
NUP54-216ENST00000514901 TUBBP07437 444 aa13.79□□□□□ -0.2
NUP54-216ENST00000514901 ENO2P09104 434 aaPredicted RBP13.79□□□□□ -0.2
NUP54-216ENST00000514901 C1QTNF9P0C862 333 aa13.79□□□□□ -0.2
NUP54-216ENST00000514901 ERGP11308 486 aa13.79□□□□□ -0.2
NUP54-216ENST00000514901 CCL4P13236 92 aa13.79□□□□□ -0.2
NUP54-216ENST00000514901 UGT2B7P16662 529 aa13.79□□□□□ -0.2
NUP54-216ENST00000514901 CNTFP26441 200 aa13.79□□□□□ -0.2
NUP54-216ENST00000514901 SLC26A3P40879 764 aa13.79□□□□□ -0.2
NUP54-216ENST00000514901 SEPHS1P49903 392 aa13.79□□□□□ -0.2
NUP54-216ENST00000514901 PNLIPRP1P54315 467 aa13.79□□□□□ -0.2
NUP54-216ENST00000514901 AP1S2P56377 157 aa13.79□□□□□ -0.2
NUP54-216ENST00000514901 ACY1Q03154 408 aa13.79□□□□□ -0.2
NUP54-216ENST00000514901 IL11RAQ14626 422 aa13.79□□□□□ -0.2
NUP54-216ENST00000514901 EFTUD2Q15029 972 aaKnown RBP eCLIP13.79□□□□□ -0.2
NUP54-216ENST00000514901 ZKSCAN8Q15776 578 aaPredicted RBP13.79□□□□□ -0.2
NUP54-216ENST00000514901 UAP1Q16222 522 aaPredicted RBP13.79□□□□□ -0.2
NUP54-216ENST00000514901 TBC1D25Q3MII6 688 aa13.79□□□□□ -0.2
NUP54-216ENST00000514901 CCSMST1Q4G0I0 132 aa13.79□□□□□ -0.2
NUP54-216ENST00000514901 EEF1AKMT2Q5JPI9 291 aaKnown RBP13.79□□□□□ -0.2
NUP54-216ENST00000514901 DCAF12Q5T6F0 453 aa13.79□□□□□ -0.2
NUP54-216ENST00000514901 LGSNQ5TDP6 509 aa13.79□□□□□ -0.2
NUP54-216ENST00000514901 WDR93Q6P2C0 686 aa13.79□□□□□ -0.2
NUP54-216ENST00000514901 TMEM207Q6UWW9 146 aa13.79□□□□□ -0.2
NUP54-216ENST00000514901 CLEC14AQ86T13 490 aa13.79□□□□□ -0.2
NUP54-216ENST00000514901 FAM129CQ86XR2 697 aa13.79□□□□□ -0.2
NUP54-216ENST00000514901 D2HGDHQ8N465 521 aa13.79□□□□□ -0.2
NUP54-216ENST00000514901 BMPERQ8N8U9 685 aa13.79□□□□□ -0.2
NUP54-216ENST00000514901 LINC01555Q8NAE3 123 aa13.79□□□□□ -0.2
NUP54-216ENST00000514901 KDF1Q8NAX2 398 aaPredicted RBP13.79□□□□□ -0.2
NUP54-216ENST00000514901 SMPDL3AQ92484 453 aa13.79□□□□□ -0.2
NUP54-216ENST00000514901 FGF11Q92914 225 aa13.79□□□□□ -0.2
NUP54-216ENST00000514901 IL17FQ96PD4 163 aa13.79□□□□□ -0.2
NUP54-216ENST00000514901 TEFMQ96QE5 360 aaKnown RBP13.79□□□□□ -0.2
NUP54-216ENST00000514901 NRTNQ99748 197 aa13.79□□□□□ -0.2
NUP54-216ENST00000514901 CCDC77Q9BR77 488 aa13.79□□□□□ -0.2
NUP54-216ENST00000514901 DDA1Q9BW61 102 aa13.79□□□□□ -0.2
NUP54-216ENST00000514901 DERL2Q9GZP9 239 aa13.79□□□□□ -0.2
NUP54-216ENST00000514901 ASCL3Q9NQ33 180 aa13.79□□□□□ -0.2
NUP54-216ENST00000514901 INTS7Q9NVH2 962 aaKnown RBP13.79□□□□□ -0.2
NUP54-216ENST00000514901 OCIAD1Q9NX40 245 aa13.79□□□□□ -0.2
NUP54-216ENST00000514901 SLC39A1Q9NY26 324 aa13.79□□□□□ -0.2
NUP54-216ENST00000514901 SPHK1Q9NYA1 384 aa13.79□□□□□ -0.2
NUP54-216ENST00000514901 ZNF180Q9UJW8 692 aa13.79□□□□□ -0.2
NUP54-216ENST00000514901 BTRCQ9Y297 605 aa13.79□□□□□ -0.2
NUP54-216ENST00000514901 PCDHB11Q9Y5F2 797 aa13.79□□□□□ -0.2
NUP54-216ENST00000514901 PCDHGA3Q9Y5H0 932 aa13.79□□□□□ -0.2
NUP54-216ENST00000514901 A0A0J9YY10 115 aa13.78□□□□□ -0.2
NUP54-216ENST00000514901 SLC9B1P1A6NJY1 282 aa13.78□□□□□ -0.2
NUP54-216ENST00000514901 KRT38O76015 456 aa13.78□□□□□ -0.2
NUP54-216ENST00000514901 WISP3O95389 354 aaPredicted RBP13.78□□□□□ -0.2
NUP54-216ENST00000514901 SYF2O95926 243 aaKnown RBP13.78□□□□□ -0.2
NUP54-216ENST00000514901 CAPNS1P04632 268 aa13.78□□□□□ -0.2
NUP54-216ENST00000514901 HGFP14210 728 aa13.78□□□□□ -0.2
NUP54-216ENST00000514901 ITIH1P19827 911 aa13.78□□□□□ -0.2
NUP54-216ENST00000514901 CD82P27701 267 aa13.78□□□□□ -0.2
NUP54-216ENST00000514901 OAS2P29728 719 aaKnown RBP13.78□□□□□ -0.2
NUP54-216ENST00000514901 MAPK10P53779 464 aa13.78□□□□□ -0.2
NUP54-216ENST00000514901 ATP6V0D1P61421 351 aa13.78□□□□□ -0.2
NUP54-216ENST00000514901 NAA25Q14CX7 972 aa13.78□□□□□ -0.2
NUP54-216ENST00000514901 CEACAM20Q6UY09 585 aa13.78□□□□□ -0.2
NUP54-216ENST00000514901 RAPH1Q70E73 1250 aa13.78□□□□□ -0.2
NUP54-216ENST00000514901 FLVCR1-AS1Q8TAF5 88 aa13.78□□□□□ -0.2
NUP54-216ENST00000514901 DENND1AQ8TEH3 1009 aa13.78□□□□□ -0.2
NUP54-216ENST00000514901 DLG3Q92796 817 aa13.78□□□□□ -0.2
NUP54-216ENST00000514901 USP7Q93009 1102 aa13.78□□□□□ -0.2
NUP54-216ENST00000514901 MRRFQ96E11 262 aaKnown RBP13.78□□□□□ -0.2
NUP54-216ENST00000514901 PAFAH2Q99487 392 aa13.78□□□□□ -0.2
NUP54-216ENST00000514901 CAB39LQ9H9S4 337 aa13.78□□□□□ -0.2
NUP54-216ENST00000514901 PDE7BQ9NP56 450 aa13.78□□□□□ -0.2
NUP54-216ENST00000514901 SIDT1Q9NXL6 827 aaKnown RBP13.78□□□□□ -0.2
NUP54-216ENST00000514901 FETUBQ9UGM5 382 aa13.78□□□□□ -0.2
NUP54-216ENST00000514901 CIDEBQ9UHD4 219 aa13.78□□□□□ -0.2
NUP54-216ENST00000514901 PDE10AQ9Y233 779 aa13.78□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 31.1 ms