RNA–Protein interactions for RNA: ENST00000514093.5

SQSTM1-215, Transcript of sequestosome 1, humanhuman

TSL 5

Gene SQSTM1, Length 842 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-215ENST00000514093 ARHGAP25P42331 645 aa19.47■□□□□ 0.71
SQSTM1-215ENST00000514093 GEMP55040 296 aa19.47■□□□□ 0.71
SQSTM1-215ENST00000514093 TFDP2Q14188 446 aa19.47■□□□□ 0.71
SQSTM1-215ENST00000514093 RANBP10Q6VN20 620 aa19.47■□□□□ 0.71
SQSTM1-215ENST00000514093 CLEC17AQ6ZS10 378 aa19.47■□□□□ 0.71
SQSTM1-215ENST00000514093 TAS2R42Q7RTR8 314 aa19.47■□□□□ 0.71
SQSTM1-215ENST00000514093 PRSS58Q8IYP2 241 aa19.47■□□□□ 0.71
SQSTM1-215ENST00000514093 TBC1D21Q8IYX1 336 aa19.47■□□□□ 0.71
SQSTM1-215ENST00000514093 C2orf73Q8N5S3 287 aaPredicted RBP19.47■□□□□ 0.71
SQSTM1-215ENST00000514093 P3H4Q92791 437 aa19.47■□□□□ 0.71
SQSTM1-215ENST00000514093 SLC26A1Q9H2B4 701 aa19.47■□□□□ 0.71
SQSTM1-215ENST00000514093 SEMA3GQ9NS98 782 aa19.47■□□□□ 0.71
SQSTM1-215ENST00000514093 C19orf84I3L1E1 186 aa19.46■□□□□ 0.71
SQSTM1-215ENST00000514093 DSCR3O14972 297 aa19.46■□□□□ 0.71
SQSTM1-215ENST00000514093 DIAPH2O60879 1101 aa19.46■□□□□ 0.71
SQSTM1-215ENST00000514093 CRTAMO95727 393 aa19.46■□□□□ 0.71
SQSTM1-215ENST00000514093 ACRV1P26436 265 aa19.46■□□□□ 0.71
SQSTM1-215ENST00000514093 ACADLP28330 430 aa19.46■□□□□ 0.71
SQSTM1-215ENST00000514093 ADRA1AP35348 466 aa19.46■□□□□ 0.71
SQSTM1-215ENST00000514093 TNFSF10P50591 281 aa19.46■□□□□ 0.71
SQSTM1-215ENST00000514093 ZNF140P52738 457 aaPredicted RBP19.46■□□□□ 0.71
SQSTM1-215ENST00000514093 MSLNQ13421 630 aaPredicted RBP19.46■□□□□ 0.71
SQSTM1-215ENST00000514093 TESK1Q15569 626 aa19.46■□□□□ 0.71
SQSTM1-215ENST00000514093 SLC18A3Q16572 532 aa19.46■□□□□ 0.71
SQSTM1-215ENST00000514093 LRRC38Q5VT99 294 aa19.46■□□□□ 0.71
SQSTM1-215ENST00000514093 CRB3Q9BUF7 120 aa19.46■□□□□ 0.71
SQSTM1-215ENST00000514093 DDX56Q9NY93 547 aaKnown RBP19.46■□□□□ 0.71
SQSTM1-215ENST00000514093 CIDEBQ9UHD4 219 aa19.46■□□□□ 0.71
SQSTM1-215ENST00000514093 POLG2Q9UHN1 485 aa19.46■□□□□ 0.71
SQSTM1-215ENST00000514093 TRHDEQ9UKU6 1024 aa19.46■□□□□ 0.71
SQSTM1-215ENST00000514093 PRSS21Q9Y6M0 314 aa19.46■□□□□ 0.71
SQSTM1-215ENST00000514093 TRAV17A0A0B4J275 112 aa19.45■□□□□ 0.7
SQSTM1-215ENST00000514093 DYTNA2CJ06 578 aa19.45■□□□□ 0.7
SQSTM1-215ENST00000514093 PRICKLE3O43900 615 aaPredicted RBP19.45■□□□□ 0.7
SQSTM1-215ENST00000514093 WISP2O76076 250 aa19.45■□□□□ 0.7
SQSTM1-215ENST00000514093 HPP00738 406 aa19.45■□□□□ 0.7
SQSTM1-215ENST00000514093 GYPCP04921 128 aa19.45■□□□□ 0.7
SQSTM1-215ENST00000514093 CA7P43166 264 aa19.45■□□□□ 0.7
SQSTM1-215ENST00000514093 FANCCQ00597 558 aa19.45■□□□□ 0.7
SQSTM1-215ENST00000514093 KIR2DS3Q14952 304 aa19.45■□□□□ 0.7
SQSTM1-215ENST00000514093 TAZQ16635 292 aa19.45■□□□□ 0.7
SQSTM1-215ENST00000514093 RPTNQ6XPR3 784 aa19.45■□□□□ 0.7
SQSTM1-215ENST00000514093 SIRT6Q8N6T7 355 aa19.45■□□□□ 0.7
SQSTM1-215ENST00000514093 OR5K2Q8NHB8 316 aa19.45■□□□□ 0.7
SQSTM1-215ENST00000514093 CCDC110Q8TBZ0 833 aa19.45■□□□□ 0.7
SQSTM1-215ENST00000514093 BRIX1Q8TDN6 353 aaKnown RBP19.45■□□□□ 0.7
SQSTM1-215ENST00000514093 VPS50Q96JG6 964 aa19.45■□□□□ 0.7
SQSTM1-215ENST00000514093 QKIQ96PU8 341 aaKnown RBP eCLIP19.45■□□□□ 0.7
SQSTM1-215ENST00000514093 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP19.45■□□□□ 0.78e-9■■□□□ 12.9
SQSTM1-215ENST00000514093 GBA3Q9H227 469 aa19.45■□□□□ 0.7
SQSTM1-215ENST00000514093 SEC14L3Q9UDX4 400 aa19.45■□□□□ 0.7
SQSTM1-215ENST00000514093 MTORP42345 2549 aa19.45■□□□□ 0.7
SQSTM1-215ENST00000514093 VSTM2BA6NLU5 285 aa19.44■□□□□ 0.7
SQSTM1-215ENST00000514093 ANXA9O76027 345 aa19.44■□□□□ 0.7
SQSTM1-215ENST00000514093 ACPPP15309 386 aa19.44■□□□□ 0.7
SQSTM1-215ENST00000514093 RBL1P28749 1068 aa19.44■□□□□ 0.7
SQSTM1-215ENST00000514093 ADORA2A-AS1P86434 159 aa19.44■□□□□ 0.7
SQSTM1-215ENST00000514093 KLC1Q07866 573 aa19.44■□□□□ 0.7
SQSTM1-215ENST00000514093 CDSNQ15517 529 aa19.44■□□□□ 0.7
SQSTM1-215ENST00000514093 GPR33Q49SQ1 333 aa19.44■□□□□ 0.7
SQSTM1-215ENST00000514093 TAX1BP1Q86VP1 789 aa19.44■□□□□ 0.7
SQSTM1-215ENST00000514093 KBTBD2Q8IY47 623 aa19.44■□□□□ 0.7
SQSTM1-215ENST00000514093 AMER2Q8N7J2 671 aa19.44■□□□□ 0.7
SQSTM1-215ENST00000514093 DENND1AQ8TEH3 1009 aa19.44■□□□□ 0.7
SQSTM1-215ENST00000514093 PSMF1Q92530 271 aa19.44■□□□□ 0.7
SQSTM1-215ENST00000514093 ELMO1Q92556 727 aa19.44■□□□□ 0.7
SQSTM1-215ENST00000514093 DNAJC1Q96KC8 554 aaKnown RBP19.44■□□□□ 0.7
SQSTM1-215ENST00000514093 SMARCAL1Q9NZC9 954 aa19.44■□□□□ 0.7
SQSTM1-215ENST00000514093 NXT1Q9UKK6 140 aaKnown RBP19.44■□□□□ 0.7
SQSTM1-215ENST00000514093 TRBV5-4A0A0C4DH59 114 aa19.43■□□□□ 0.7
SQSTM1-215ENST00000514093 BHMG1C9JSJ3 638 aaPredicted RBP19.43■□□□□ 0.7
SQSTM1-215ENST00000514093 LIN7AO14910 233 aaPredicted RBP19.43■□□□□ 0.7
SQSTM1-215ENST00000514093 AP2A1O95782 977 aa19.43■□□□□ 0.7
SQSTM1-215ENST00000514093 COMTP21964 271 aa19.43■□□□□ 0.7
SQSTM1-215ENST00000514093 SOX11P35716 441 aa19.43■□□□□ 0.7
SQSTM1-215ENST00000514093 SPARCL1Q14515 664 aa19.43■□□□□ 0.7
SQSTM1-215ENST00000514093 GRM7Q14831 915 aa19.43■□□□□ 0.7
SQSTM1-215ENST00000514093 IQCB1Q15051 598 aa19.43■□□□□ 0.7
SQSTM1-215ENST00000514093 DBN1Q16643 649 aa19.43■□□□□ 0.7
SQSTM1-215ENST00000514093 KRTAP21-3Q3LHN1 58 aa19.43■□□□□ 0.7
SQSTM1-215ENST00000514093 MTFR2Q6P444 385 aa19.43■□□□□ 0.7
SQSTM1-215ENST00000514093 ARHGEF18Q6ZSZ5 1173 aa19.43■□□□□ 0.7
SQSTM1-215ENST00000514093 CCDC50Q8IVM0 306 aa19.43■□□□□ 0.7
SQSTM1-215ENST00000514093 PIANPQ8IYJ0 282 aa19.43■□□□□ 0.7
SQSTM1-215ENST00000514093 HAS2Q92819 552 aa19.43■□□□□ 0.7
SQSTM1-215ENST00000514093 CAMSAP3Q9P1Y5 1249 aaPredicted RBP19.43■□□□□ 0.7
SQSTM1-215ENST00000514093 MAP2K7O14733 419 aa19.42■□□□□ 0.7
SQSTM1-215ENST00000514093 KCNN4O15554 427 aa19.42■□□□□ 0.7
SQSTM1-215ENST00000514093 USP1O94782 785 aa19.42■□□□□ 0.7
SQSTM1-215ENST00000514093 MED26O95402 600 aa19.42■□□□□ 0.7
SQSTM1-215ENST00000514093 CELA2AP08217 269 aa19.42■□□□□ 0.7
SQSTM1-215ENST00000514093 PRR35P0CG20 571 aa19.42■□□□□ 0.7
SQSTM1-215ENST00000514093 PSMB4P28070 264 aa19.42■□□□□ 0.7
SQSTM1-215ENST00000514093 KIR3DL1P43629 444 aa19.42■□□□□ 0.7
SQSTM1-215ENST00000514093 CSE1LP55060 971 aaKnown RBP19.42■□□□□ 0.7
SQSTM1-215ENST00000514093 UBASH3AP57075 661 aa19.42■□□□□ 0.7
SQSTM1-215ENST00000514093 ASTE1Q2TB18 679 aaPredicted RBP19.42■□□□□ 0.7
SQSTM1-215ENST00000514093 DENND5AQ6IQ26 1287 aa19.42■□□□□ 0.7
SQSTM1-215ENST00000514093 XKRXQ6PP77 449 aa19.42■□□□□ 0.7
SQSTM1-215ENST00000514093 LINC01555Q8NAE3 123 aa19.42■□□□□ 0.7
Retrieved 100 of 20,778 RNA–protein pairs in 26.2 ms