RNA–Protein interactions for RNA: ENST00000512946.5

LIMCH1-217, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 5,057 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-217ENST00000512946 LOC100509620A0A075B734 347 aa11.02□□□□□ -0.65
LIMCH1-217ENST00000512946 OR6C6A6NF89 314 aa11.02□□□□□ -0.65
LIMCH1-217ENST00000512946 ENDOD1O94919 500 aa11.02□□□□□ -0.65
LIMCH1-217ENST00000512946 CXCL8P10145 99 aa11.02□□□□□ -0.65
LIMCH1-217ENST00000512946 FMO3P31513 532 aa11.02□□□□□ -0.65
LIMCH1-217ENST00000512946 ATP5C1P36542 298 aaKnown RBP11.02□□□□□ -0.65
LIMCH1-217ENST00000512946 ALDH3B1P43353 468 aa11.02□□□□□ -0.65
LIMCH1-217ENST00000512946 SOX9P48436 509 aa11.02□□□□□ -0.65
LIMCH1-217ENST00000512946 ORC1Q13415 861 aa11.02□□□□□ -0.65
LIMCH1-217ENST00000512946 ARL6IP1Q15041 203 aa11.02□□□□□ -0.65
LIMCH1-217ENST00000512946 LGI4Q8N135 537 aa11.02□□□□□ -0.65
LIMCH1-217ENST00000512946 SLC2A14Q8TDB8 520 aa11.02□□□□□ -0.65
LIMCH1-217ENST00000512946 COQ8BQ96D53 544 aa11.02□□□□□ -0.65
LIMCH1-217ENST00000512946 UROC1Q96N76 676 aa11.02□□□□□ -0.65
LIMCH1-217ENST00000512946 TMEM209Q96SK2 561 aa11.02□□□□□ -0.65
LIMCH1-217ENST00000512946 PIH1D1Q9NWS0 290 aaKnown RBP11.02□□□□□ -0.65
LIMCH1-217ENST00000512946 UGGT1Q9NYU2 1555 aa11.01□□□□□ -0.65
LIMCH1-217ENST00000512946 SALL1Q9NSC2 1324 aa11.01□□□□□ -0.65
LIMCH1-217ENST00000512946 C13orf42A0A1B0GVH6 325 aa11.01□□□□□ -0.65
LIMCH1-217ENST00000512946 ARPC2O15144 300 aa11.01□□□□□ -0.65
LIMCH1-217ENST00000512946 LGR5O75473 907 aa11.01□□□□□ -0.65
LIMCH1-217ENST00000512946 PDYNP01213 254 aa11.01□□□□□ -0.65
LIMCH1-217ENST00000512946 MT-ND5P03915 603 aa11.01□□□□□ -0.65
LIMCH1-217ENST00000512946 CAP2P40123 477 aa11.01□□□□□ -0.65
LIMCH1-217ENST00000512946 HERV-K104P61576 105 aa11.01□□□□□ -0.65
LIMCH1-217ENST00000512946 CTBP1Q13363 440 aa11.01□□□□□ -0.65
LIMCH1-217ENST00000512946 DNASE1L3Q13609 305 aa11.01□□□□□ -0.65
LIMCH1-217ENST00000512946 ZNF460Q14592 562 aa11.01□□□□□ -0.65
LIMCH1-217ENST00000512946 AMHR2Q16671 573 aa11.01□□□□□ -0.65
LIMCH1-217ENST00000512946 TEX44Q53QW1 395 aa11.01□□□□□ -0.65
LIMCH1-217ENST00000512946 ATAD3CQ5T2N8 411 aa11.01□□□□□ -0.65
LIMCH1-217ENST00000512946 ZNF772Q68DY9 489 aaPredicted RBP11.01□□□□□ -0.65
LIMCH1-217ENST00000512946 PNCKQ6P2M8 343 aa11.01□□□□□ -0.65
LIMCH1-217ENST00000512946 DET1Q7L5Y6 550 aa11.01□□□□□ -0.65
LIMCH1-217ENST00000512946 ARL14Q8N4G2 192 aa11.01□□□□□ -0.65
LIMCH1-217ENST00000512946 DNASE1L2Q92874 299 aa11.01□□□□□ -0.65
LIMCH1-217ENST00000512946 AZIN2Q96A70 460 aa11.01□□□□□ -0.65
LIMCH1-217ENST00000512946 ZNF486Q96H40 463 aaPredicted RBP11.01□□□□□ -0.65
LIMCH1-217ENST00000512946 HNRNPABQ99729 332 aaKnown RBP11.01□□□□□ -0.65
LIMCH1-217ENST00000512946 VRK1Q99986 396 aaPredicted RBP11.01□□□□□ -0.65
LIMCH1-217ENST00000512946 ULBP1Q9BZM6 244 aa11.01□□□□□ -0.65
LIMCH1-217ENST00000512946 DNAJC5Q9H3Z4 198 aa11.01□□□□□ -0.65
LIMCH1-217ENST00000512946 IPPKQ9H8X2 491 aa11.01□□□□□ -0.65
LIMCH1-217ENST00000512946 STUB1Q9UNE7 303 aa11.01□□□□□ -0.65
LIMCH1-217ENST00000512946 CA5BQ9Y2D0 317 aa11.01□□□□□ -0.65
LIMCH1-217ENST00000512946 ZNF878C9JN71 531 aa11.01□□□□□ -0.65
LIMCH1-217ENST00000512946 ALDH2P05091 517 aa11.01□□□□□ -0.65
LIMCH1-217ENST00000512946 UCHL1P09936 223 aa11.01□□□□□ -0.65
LIMCH1-217ENST00000512946 HOXD8P13378 290 aaPredicted RBP11.01□□□□□ -0.65
LIMCH1-217ENST00000512946 FNTBP49356 437 aa11.01□□□□□ -0.65
LIMCH1-217ENST00000512946 IDH3GP51553 393 aaPredicted RBP11.01□□□□□ -0.65
LIMCH1-217ENST00000512946 SCGB2B2Q4G0G5 96 aa11.01□□□□□ -0.65
LIMCH1-217ENST00000512946 RALGPS1Q5JS13 557 aa11.01□□□□□ -0.65
LIMCH1-217ENST00000512946 ZNF366Q8N895 744 aa11.01□□□□□ -0.65
LIMCH1-217ENST00000512946 PURBQ96QR8 312 aaKnown RBP11.01□□□□□ -0.65
LIMCH1-217ENST00000512946 TREX2Q9BQ50 279 aaPredicted RBP11.01□□□□□ -0.65
LIMCH1-217ENST00000512946 CDT1Q9H211 546 aa11.01□□□□□ -0.65
LIMCH1-217ENST00000512946 RHBGQ9H310 441 aa11.01□□□□□ -0.65
LIMCH1-217ENST00000512946 ENY2Q9NPA8 101 aa11.01□□□□□ -0.65
LIMCH1-217ENST00000512946 ATP7AQ04656 1500 aa11.01□□□□□ -0.65
LIMCH1-217ENST00000512946 NAP1L6A6NFF2 107 aa11.01□□□□□ -0.65
LIMCH1-217ENST00000512946 EFCAB7A8K855 629 aa11.01□□□□□ -0.65
LIMCH1-217ENST00000512946 F8W036 122 aa11.01□□□□□ -0.65
LIMCH1-217ENST00000512946 SGCEO43556 437 aa11.01□□□□□ -0.65
LIMCH1-217ENST00000512946 LCMT2O60294 686 aaKnown RBP11.01□□□□□ -0.65
LIMCH1-217ENST00000512946 OAZ2O95190 189 aa11.01□□□□□ -0.65
LIMCH1-217ENST00000512946 SLC34A2O95436 690 aa11.01□□□□□ -0.65
LIMCH1-217ENST00000512946 SLC16A8O95907 504 aa11.01□□□□□ -0.65
LIMCH1-217ENST00000512946 TFPIP10646 304 aa11.01□□□□□ -0.65
LIMCH1-217ENST00000512946 ATP4BP51164 291 aa11.01□□□□□ -0.65
LIMCH1-217ENST00000512946 PRKXP51817 358 aa11.01□□□□□ -0.65
LIMCH1-217ENST00000512946 SPOCK1Q08629 439 aa11.01□□□□□ -0.65
LIMCH1-217ENST00000512946 CD47Q08722 323 aa11.01□□□□□ -0.65
LIMCH1-217ENST00000512946 UBAP2Q5T6F2 1119 aaKnown RBP11.01□□□□□ -0.65
LIMCH1-217ENST00000512946 RFWD3Q6PCD5 774 aa11.01□□□□□ -0.65
LIMCH1-217ENST00000512946 GDPGP1Q6ZNW5 385 aa11.01□□□□□ -0.65
LIMCH1-217ENST00000512946 FAM46DQ8NEK8 389 aa11.01□□□□□ -0.65
LIMCH1-217ENST00000512946 GPRC5AQ8NFJ5 357 aa11.01□□□□□ -0.65
LIMCH1-217ENST00000512946 RRNAD1Q96FB5 475 aaKnown RBP11.01□□□□□ -0.65
LIMCH1-217ENST00000512946 UCK2Q9BZX2 261 aa11.01□□□□□ -0.65
LIMCH1-217ENST00000512946 TMEM185BQ9H7F4 350 aa11.01□□□□□ -0.65
LIMCH1-217ENST00000512946 PPP4R1LQ9P1A2 415 aa11.01□□□□□ -0.65
LIMCH1-217ENST00000512946 RIMKLBQ9ULI2 386 aa11.01□□□□□ -0.65
LIMCH1-217ENST00000512946 B3GNT3Q9Y2A9 372 aa11.01□□□□□ -0.65
LIMCH1-217ENST00000512946 CTTNBP2Q8WZ74 1663 aa11.01□□□□□ -0.65
LIMCH1-217ENST00000512946 A0A075B6Q4 140 aa11.01□□□□□ -0.65
LIMCH1-217ENST00000512946 AP2A1O95782 977 aa11.01□□□□□ -0.65
LIMCH1-217ENST00000512946 ASGR1P07306 291 aa11.01□□□□□ -0.65
LIMCH1-217ENST00000512946 C8GP07360 202 aa11.01□□□□□ -0.65
LIMCH1-217ENST00000512946 XRCC1P18887 633 aaPredicted RBP11.01□□□□□ -0.65
LIMCH1-217ENST00000512946 AQP1P29972 269 aa11.01□□□□□ -0.65
LIMCH1-217ENST00000512946 PBX1P40424 430 aa11.01□□□□□ -0.65
LIMCH1-217ENST00000512946 ABRAXAS2Q15018 415 aa11.01□□□□□ -0.65
LIMCH1-217ENST00000512946 UAP1L1Q3KQV9 507 aa11.01□□□□□ -0.65
LIMCH1-217ENST00000512946 KRBOX4Q5JUW0 171 aa11.01□□□□□ -0.65
LIMCH1-217ENST00000512946 IRF2BP2Q7Z5L9 587 aa11.01□□□□□ -0.65
LIMCH1-217ENST00000512946 PSD4Q8NDX1 1056 aa11.01□□□□□ -0.65
LIMCH1-217ENST00000512946 TMBIM1Q969X1 311 aa11.01□□□□□ -0.65
LIMCH1-217ENST00000512946 ERLEC1Q96DZ1 483 aa11.01□□□□□ -0.65
LIMCH1-217ENST00000512946 MRPL45Q9BRJ2 306 aaKnown RBP11.01□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 26.6 ms