RNA–Protein interactions for RNA: ENST00000498213.1

USP54-217, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 4

Gene USP54, Length 815 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-217ENST00000498213 IRF1P10914 325 aa3.92□□□□□ -1.78
USP54-217ENST00000498213 CYP2A6P11509 494 aaPredicted RBP3.92□□□□□ -1.78
USP54-217ENST00000498213 CREB1P16220 341 aa3.92□□□□□ -1.78
USP54-217ENST00000498213 TPH1P17752 444 aa3.92□□□□□ -1.78
USP54-217ENST00000498213 SYT1P21579 422 aa3.92□□□□□ -1.78
USP54-217ENST00000498213 ACVR2AP27037 513 aa3.92□□□□□ -1.78
USP54-217ENST00000498213 IL1R2P27930 398 aa3.92□□□□□ -1.78
USP54-217ENST00000498213 HOXD9P28356 352 aaPredicted RBP3.92□□□□□ -1.78
USP54-217ENST00000498213 OAS2P29728 719 aaKnown RBP3.92□□□□□ -1.78
USP54-217ENST00000498213 UQCRC1P31930 480 aa3.92□□□□□ -1.78
USP54-217ENST00000498213 PTGER4P35408 488 aa3.92□□□□□ -1.78
USP54-217ENST00000498213 HOXD13P35453 343 aa3.92□□□□□ -1.78
USP54-217ENST00000498213 ANP32AP39687 249 aaKnown RBP3.92□□□□□ -1.78
USP54-217ENST00000498213 RPL34P49207 117 aaKnown RBP3.92□□□□□ -1.78
USP54-217ENST00000498213 SUOXP51687 545 aa3.92□□□□□ -1.78
USP54-217ENST00000498213 VAMP7P51809 220 aa3.92□□□□□ -1.78
USP54-217ENST00000498213 PGDP52209 483 aa3.92□□□□□ -1.78
USP54-217ENST00000498213 GALCP54803 685 aa3.92□□□□□ -1.78
USP54-217ENST00000498213 YWHAGP61981 247 aaKnown RBP eCLIP3.92□□□□□ -1.78
USP54-217ENST00000498213 RPS16P62249 146 aaKnown RBP3.92□□□□□ -1.78
USP54-217ENST00000498213 RPS14P62263 151 aaKnown RBP3.92□□□□□ -1.78
USP54-217ENST00000498213 SSBP2P81877 361 aaPredicted RBP3.92□□□□□ -1.78
USP54-217ENST00000498213 SLC20A2Q08357 652 aa3.92□□□□□ -1.78
USP54-217ENST00000498213 BST2Q10589 180 aaKnown RBP3.92□□□□□ -1.78
USP54-217ENST00000498213 FOXD4Q12950 439 aaPredicted RBP3.92□□□□□ -1.78
USP54-217ENST00000498213 PEX6Q13608 980 aa3.92□□□□□ -1.78
USP54-217ENST00000498213 KCNJ12Q14500 433 aa3.92□□□□□ -1.78
USP54-217ENST00000498213 SLC29A2Q14542 456 aa3.92□□□□□ -1.78
USP54-217ENST00000498213 POLD3Q15054 466 aaPredicted RBP3.92□□□□□ -1.78
USP54-217ENST00000498213 STK38Q15208 465 aa3.92□□□□□ -1.78
USP54-217ENST00000498213 POM121L1PQ3SYA9 428 aa3.92□□□□□ -1.78
USP54-217ENST00000498213 SETMARQ53H47 684 aaPredicted RBP3.92□□□□□ -1.78
USP54-217ENST00000498213 ZNF542PQ5EBM4 170 aa3.92□□□□□ -1.78
USP54-217ENST00000498213 RNASE12Q5GAN4 147 aaKnown RBP3.92□□□□□ -1.78
USP54-217ENST00000498213 RNF220Q5VTB9 566 aa3.92□□□□□ -1.78
USP54-217ENST00000498213 NXNQ6DKJ4 435 aa3.92□□□□□ -1.78
USP54-217ENST00000498213 NCEH1Q6PIU2 408 aa3.92□□□□□ -1.78
USP54-217ENST00000498213 LVRNQ6Q4G3 990 aa3.92□□□□□ -1.78
USP54-217ENST00000498213 TPGS1Q6ZTW0 290 aa3.92□□□□□ -1.78
USP54-217ENST00000498213 ADIPOR2Q86V24 386 aa3.92□□□□□ -1.78
USP54-217ENST00000498213 ZDHHC17Q8IUH5 632 aa3.92□□□□□ -1.78
USP54-217ENST00000498213 PHC2Q8IXK0 858 aa3.92□□□□□ -1.78
USP54-217ENST00000498213 GUF1Q8N442 669 aaKnown RBP3.92□□□□□ -1.78
USP54-217ENST00000498213 FBXL13Q8NEE6 735 aa3.92□□□□□ -1.78
USP54-217ENST00000498213 DENND6BQ8NEG7 585 aa3.92□□□□□ -1.78
USP54-217ENST00000498213 SORCS1Q8WY21 1168 aa3.92□□□□□ -1.78
USP54-217ENST00000498213 MAML1Q92585 1016 aa3.92□□□□□ -1.78
USP54-217ENST00000498213 WBP2Q969T9 261 aa3.92□□□□□ -1.78
USP54-217ENST00000498213 RAB7BQ96AH8 199 aa3.92□□□□□ -1.78
USP54-217ENST00000498213 NMD3Q96D46 503 aaKnown RBP3.92□□□□□ -1.78
USP54-217ENST00000498213 ARHGEF26Q96DR7 871 aa3.92□□□□□ -1.78
USP54-217ENST00000498213 PPP1R13BQ96KQ4 1090 aa3.92□□□□□ -1.78
USP54-217ENST00000498213 THAP7Q9BT49 309 aaPredicted RBP3.92□□□□□ -1.78
USP54-217ENST00000498213 EFHD1Q9BUP0 239 aa3.92□□□□□ -1.78
USP54-217ENST00000498213 TRIM5Q9C035 493 aa3.92□□□□□ -1.78
USP54-217ENST00000498213 PRSS22Q9GZN4 317 aa3.92□□□□□ -1.78
USP54-217ENST00000498213 MIS12Q9H081 205 aa3.92□□□□□ -1.78
USP54-217ENST00000498213 VPS16Q9H269 839 aa3.92□□□□□ -1.78
USP54-217ENST00000498213 DPEP3Q9H4B8 488 aa3.92□□□□□ -1.78
USP54-217ENST00000498213 METTL14Q9HCE5 456 aaKnown RBP3.92□□□□□ -1.78
USP54-217ENST00000498213 PRSS16Q9NQE7 514 aa3.92□□□□□ -1.78
USP54-217ENST00000498213 EXOC1Q9NV70 894 aa3.92□□□□□ -1.78
USP54-217ENST00000498213 TMEM30AQ9NV96 361 aa3.92□□□□□ -1.78
USP54-217ENST00000498213 ASNSD1Q9NWL6 643 aa3.92□□□□□ -1.78
USP54-217ENST00000498213 RMND1Q9NWS8 449 aa3.92□□□□□ -1.78
USP54-217ENST00000498213 FBXL12Q9NXK8 326 aa3.92□□□□□ -1.78
USP54-217ENST00000498213 TUBA8Q9NY65 449 aaPredicted RBP3.92□□□□□ -1.78
USP54-217ENST00000498213 PLK2Q9NYY3 685 aa3.92□□□□□ -1.78
USP54-217ENST00000498213 NLGN3Q9NZ94 848 aa3.92□□□□□ -1.78
USP54-217ENST00000498213 ERVW-1Q9UQF0 538 aa3.92□□□□□ -1.78
USP54-217ENST00000498213 CA5BQ9Y2D0 317 aa3.92□□□□□ -1.78
USP54-217ENST00000498213 LOXL2Q9Y4K0 774 aa3.92□□□□□ -1.78
USP54-217ENST00000498213 ATP6V1DQ9Y5K8 247 aa3.92□□□□□ -1.78
USP54-217ENST00000498213 DCHS2Q6V1P9 2916 aa3.92□□□□□ -1.78
USP54-217ENST00000498213 ZNF469Q96JG9 3925 aaPredicted RBP3.92□□□□□ -1.78
USP54-217ENST00000498213 SHANK1Q9Y566 2161 aa3.92□□□□□ -1.78
USP54-217ENST00000498213 DOCK9Q9BZ29 2069 aa3.91□□□□□ -1.78
USP54-217ENST00000498213 MYOFQ9NZM1 2061 aa3.91□□□□□ -1.78
USP54-217ENST00000498213 DIDO1Q9BTC0 2240 aaKnown RBP3.91□□□□□ -1.78
USP54-217ENST00000498213 FAM237AA0A1B0GTK4 181 aa3.91□□□□□ -1.78
USP54-217ENST00000498213 ANKUB1A6NFN9 424 aa3.91□□□□□ -1.78
USP54-217ENST00000498213 AQP7P3A6NL99 342 aa3.91□□□□□ -1.78
USP54-217ENST00000498213 LRRIQ3A6PVS8 624 aaPredicted RBP3.91□□□□□ -1.78
USP54-217ENST00000498213 MCF2LO15068 1137 aa3.91□□□□□ -1.78
USP54-217ENST00000498213 CETN3O15182 167 aa3.91□□□□□ -1.78
USP54-217ENST00000498213 CD3EAPO15446 510 aaKnown RBP3.91□□□□□ -1.78
USP54-217ENST00000498213 PLRG1O43660 514 aaKnown RBP3.91□□□□□ -1.78
USP54-217ENST00000498213 SNX2O60749 519 aa3.91□□□□□ -1.78
USP54-217ENST00000498213 SORBS2O94875 1100 aaKnown RBP3.91□□□□□ -1.78
USP54-217ENST00000498213 KLKB1P03952 638 aa3.91□□□□□ -1.78
USP54-217ENST00000498213 NR3C1P04150 777 aa3.91□□□□□ -1.78
USP54-217ENST00000498213 IGKV2-30P06310 120 aa3.91□□□□□ -1.78
USP54-217ENST00000498213 EPB41P11171 864 aaKnown RBP3.91□□□□□ -1.78
USP54-217ENST00000498213 VDRP11473 427 aa3.91□□□□□ -1.78
USP54-217ENST00000498213 CD19P15391 556 aa3.91□□□□□ -1.78
USP54-217ENST00000498213 CAPN3P20807 821 aa3.91□□□□□ -1.78
USP54-217ENST00000498213 CMA1P23946 247 aa3.91□□□□□ -1.78
USP54-217ENST00000498213 ITGA3P26006 1051 aa3.91□□□□□ -1.78
USP54-217ENST00000498213 HLA-FP30511 346 aa3.91□□□□□ -1.78
USP54-217ENST00000498213 PIK3CAP42336 1068 aa3.91□□□□□ -1.78
Retrieved 100 of 20,778 RNA–protein pairs in 26.9 ms