RNA–Protein interactions for RNA: ENST00000495528.1

VIM-207, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 962 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-207ENST00000495528 HTR7P34969 479 aa6.47□□□□□ -1.37
VIM-207ENST00000495528 DEKP35659 375 aaKnown RBP6.47□□□□□ -1.37
VIM-207ENST00000495528 STK19P49842 368 aaPredicted RBP6.47□□□□□ -1.37
VIM-207ENST00000495528 YWHAEP62258 255 aaKnown RBP6.47□□□□□ -1.37
VIM-207ENST00000495528 ECT2LQ008S8 904 aa6.47□□□□□ -1.37
VIM-207ENST00000495528 GCNT1Q02742 428 aa6.47□□□□□ -1.37
VIM-207ENST00000495528 CFHR1Q03591 330 aa6.47□□□□□ -1.37
VIM-207ENST00000495528 DEUP1Q05D60 604 aa6.47□□□□□ -1.37
VIM-207ENST00000495528 ILKQ13418 452 aa6.47□□□□□ -1.37
VIM-207ENST00000495528 CDH18Q13634 790 aa6.47□□□□□ -1.37
VIM-207ENST00000495528 ASIC2Q16515 512 aa6.47□□□□□ -1.37
VIM-207ENST00000495528 SLC45A4Q5BKX6 768 aa6.47□□□□□ -1.37
VIM-207ENST00000495528 RNASE12Q5GAN4 147 aaKnown RBP6.47□□□□□ -1.37
VIM-207ENST00000495528 TMTC4Q5T4D3 741 aa6.47□□□□□ -1.37
VIM-207ENST00000495528 NAPEPLDQ6IQ20 393 aa6.47□□□□□ -1.37
VIM-207ENST00000495528 KIRREL2Q6UWL6 708 aa6.47□□□□□ -1.37
VIM-207ENST00000495528 LCLAT1Q6UWP7 414 aa6.47□□□□□ -1.37
VIM-207ENST00000495528 KDM7AQ6ZMT4 941 aa6.47□□□□□ -1.37
VIM-207ENST00000495528 PTCHD4Q6ZW05 846 aa6.47□□□□□ -1.37
VIM-207ENST00000495528 IRF2BP2Q7Z5L9 587 aa6.47□□□□□ -1.37
VIM-207ENST00000495528 PRPF39Q86UA1 669 aaKnown RBP6.47□□□□□ -1.37
VIM-207ENST00000495528 CNGA4Q8IV77 575 aa6.47□□□□□ -1.37
VIM-207ENST00000495528 P3H2Q8IVL5 708 aa6.47□□□□□ -1.37
VIM-207ENST00000495528 FAM71AQ8IYT1 594 aa6.47□□□□□ -1.37
VIM-207ENST00000495528 SLC25A45Q8N413 288 aa6.47□□□□□ -1.37
VIM-207ENST00000495528 ZNF557Q8N988 423 aaPredicted RBP6.47□□□□□ -1.37
VIM-207ENST00000495528 FAM98AQ8NCA5 519 aaKnown RBP6.47□□□□□ -1.37
VIM-207ENST00000495528 DQX1Q8TE96 717 aaKnown RBP6.47□□□□□ -1.37
VIM-207ENST00000495528 ABHD5Q8WTS1 349 aa6.47□□□□□ -1.37
VIM-207ENST00000495528 RFFLQ8WZ73 363 aa6.47□□□□□ -1.37
VIM-207ENST00000495528 IRGQQ8WZA9 623 aa6.47□□□□□ -1.37
VIM-207ENST00000495528 SHC3Q92529 594 aa6.47□□□□□ -1.37
VIM-207ENST00000495528 FAM131CQ96AQ9 280 aa6.47□□□□□ -1.37
VIM-207ENST00000495528 NAF1Q96HR8 494 aaKnown RBP6.47□□□□□ -1.37
VIM-207ENST00000495528 FAM81BQ96LP2 452 aa6.47□□□□□ -1.37
VIM-207ENST00000495528 CHP1Q99653 195 aa6.47□□□□□ -1.37
VIM-207ENST00000495528 DDX50Q9BQ39 737 aaKnown RBP6.47□□□□□ -1.37
VIM-207ENST00000495528 MIS12Q9H081 205 aa6.47□□□□□ -1.37
VIM-207ENST00000495528 ACP6Q9NPH0 428 aa6.47□□□□□ -1.37
VIM-207ENST00000495528 ZNHIT6Q9NWK9 470 aaKnown RBP6.47□□□□□ -1.37
VIM-207ENST00000495528 AIPL1Q9NZN9 384 aa6.47□□□□□ -1.37
VIM-207ENST00000495528 SARDHQ9UL12 918 aa6.47□□□□□ -1.37
VIM-207ENST00000495528 KIAA1257Q9ULG3 409 aa6.47□□□□□ -1.37
VIM-207ENST00000495528 NAALADL1Q9UQQ1 740 aa6.47□□□□□ -1.37
VIM-207ENST00000495528 CA5BQ9Y2D0 317 aa6.47□□□□□ -1.37
VIM-207ENST00000495528 HELZ2Q9BYK8 2649 aaKnown RBP6.47□□□□□ -1.37
VIM-207ENST00000495528 PTPRQQ9UMZ3 2332 aa6.47□□□□□ -1.37
VIM-207ENST00000495528 SHROOM3Q8TF72 1996 aa6.46□□□□□ -1.37
VIM-207ENST00000495528 TYW5A2RUC4 315 aaKnown RBP6.46□□□□□ -1.38
VIM-207ENST00000495528 F8VZ95 297 aa6.46□□□□□ -1.38
VIM-207ENST00000495528 PIP5K1BO14986 540 aa6.46□□□□□ -1.38
VIM-207ENST00000495528 RTN2O75298 545 aa6.46□□□□□ -1.38
VIM-207ENST00000495528 WDR47O94967 919 aa6.46□□□□□ -1.38
VIM-207ENST00000495528 MOCS3O95396 460 aa6.46□□□□□ -1.38
VIM-207ENST00000495528 MOCS2O96007 188 aaPredicted RBP6.46□□□□□ -1.38
VIM-207ENST00000495528 PLEKP08567 350 aaPredicted RBP6.46□□□□□ -1.38
VIM-207ENST00000495528 CCDC172P0C7W6 258 aa6.46□□□□□ -1.38
VIM-207ENST00000495528 GIMD1P0DJR0 217 aa6.46□□□□□ -1.38
VIM-207ENST00000495528 TMEM225BP0DP42 221 aa6.46□□□□□ -1.38
VIM-207ENST00000495528 FERP16591 822 aa6.46□□□□□ -1.38
VIM-207ENST00000495528 TNFAIP3P21580 790 aa6.46□□□□□ -1.38
VIM-207ENST00000495528 ACTN2P35609 894 aa6.46□□□□□ -1.38
VIM-207ENST00000495528 DIO1P49895 249 aa6.46□□□□□ -1.38
VIM-207ENST00000495528 ELLP55199 621 aaPredicted RBP6.46□□□□□ -1.38
VIM-207ENST00000495528 GSDMDP57764 484 aa6.46□□□□□ -1.38
VIM-207ENST00000495528 KLHL30Q0D2K2 578 aa6.46□□□□□ -1.38
VIM-207ENST00000495528 BIRC2Q13490 618 aa6.46□□□□□ -1.38
VIM-207ENST00000495528 SMN1Q16637 294 aaKnown RBP6.46□□□□□ -1.38
VIM-207ENST00000495528 MAPKAPK3Q16644 382 aa6.46□□□□□ -1.38
VIM-207ENST00000495528 POM121L1PQ3SYA9 428 aa6.46□□□□□ -1.38
VIM-207ENST00000495528 TAF3Q5VWG9 929 aa6.46□□□□□ -1.38
VIM-207ENST00000495528 SYPL2Q5VXT5 272 aa6.46□□□□□ -1.38
VIM-207ENST00000495528 WDR59Q6PJI9 974 aa6.46□□□□□ -1.38
VIM-207ENST00000495528 SLC47A2Q86VL8 602 aa6.46□□□□□ -1.38
VIM-207ENST00000495528 CCDC117Q8IWD4 279 aaPredicted RBP6.46□□□□□ -1.38
VIM-207ENST00000495528 LRRC8AQ8IWT6 810 aa6.46□□□□□ -1.38
VIM-207ENST00000495528 LGI2Q8N0V4 545 aa6.46□□□□□ -1.38
VIM-207ENST00000495528 ZNF606Q8WXB4 792 aa6.46□□□□□ -1.38
VIM-207ENST00000495528 SYN2Q92777 582 aaPredicted RBP6.46□□□□□ -1.38
VIM-207ENST00000495528 DAZAP1Q96EP5 407 aaKnown RBP6.46□□□□□ -1.38
VIM-207ENST00000495528 VPS50Q96JG6 964 aa6.46□□□□□ -1.38
VIM-207ENST00000495528 HSFY1Q96LI6 401 aa6.46□□□□□ -1.38
VIM-207ENST00000495528 PANX2Q96RD6 677 aa6.46□□□□□ -1.38
VIM-207ENST00000495528 AGPAT1Q99943 283 aa6.46□□□□□ -1.38
VIM-207ENST00000495528 THAP7Q9BT49 309 aaPredicted RBP6.46□□□□□ -1.38
VIM-207ENST00000495528 HAUS4Q9H6D7 363 aa6.46□□□□□ -1.38
VIM-207ENST00000495528 EPS8L2Q9H6S3 715 aa6.46□□□□□ -1.38
VIM-207ENST00000495528 ABHD10Q9NUJ1 306 aa6.46□□□□□ -1.38
VIM-207ENST00000495528 CYTH4Q9UIA0 394 aa6.46□□□□□ -1.38
VIM-207ENST00000495528 MYO6Q9UM54 1294 aa6.46□□□□□ -1.38
VIM-207ENST00000495528 CNTN6Q9UQ52 1028 aa6.46□□□□□ -1.38
VIM-207ENST00000495528 COL5A1P20908 1838 aaPredicted RBP6.46□□□□□ -1.38
VIM-207ENST00000495528 SETXQ7Z333 2677 aaKnown RBP6.45□□□□□ -1.38
VIM-207ENST00000495528 FAM170AA1A519 330 aa6.45□□□□□ -1.38
VIM-207ENST00000495528 F5H423 210 aaPredicted RBP6.45□□□□□ -1.38
VIM-207ENST00000495528 J3QKU1 62 aa6.45□□□□□ -1.38
VIM-207ENST00000495528 M0QYV0 167 aa6.45□□□□□ -1.38
VIM-207ENST00000495528 SLC7A4O43246 635 aa6.45□□□□□ -1.38
VIM-207ENST00000495528 PLRG1O43660 514 aaKnown RBP6.45□□□□□ -1.38
VIM-207ENST00000495528 MAGEC1O60732 1142 aa6.45□□□□□ -1.38
Retrieved 100 of 20,778 RNA–protein pairs in 29.7 ms