RNA–Protein interactions for RNA: ENST00000495039.1

VPS50-219, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 1 (best)

Gene VPS50, Length 1,115 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-219ENST00000495039 CPSF2Q9P2I0 782 aaKnown RBP3.21□□□□□ -1.9
VPS50-219ENST00000495039 CLIP2Q9UDT6 1046 aa3.21□□□□□ -1.9
VPS50-219ENST00000495039 TDRD15B5MCY1 1934 aaKnown RBP3.21□□□□□ -1.9
VPS50-219ENST00000495039 IGKV6D-21A0A0A0MT36 114 aa3.2□□□□□ -1.9
VPS50-219ENST00000495039 IGLV9-49A0A0B4J1Y8 123 aa3.2□□□□□ -1.9
VPS50-219ENST00000495039 TEX13DA0A0J9YY54 714 aaPredicted RBP3.2□□□□□ -1.9
VPS50-219ENST00000495039 ELOVL7A1L3X0 281 aa3.2□□□□□ -1.9
VPS50-219ENST00000495039 GLOD5A6NK44 160 aa3.2□□□□□ -1.9
VPS50-219ENST00000495039 TO15178 435 aa3.2□□□□□ -1.9
VPS50-219ENST00000495039 BCL2L11O43521 198 aa3.2□□□□□ -1.9
VPS50-219ENST00000495039 GCNT3O95395 438 aa3.2□□□□□ -1.9
VPS50-219ENST00000495039 BCL10O95999 233 aa3.2□□□□□ -1.9
VPS50-219ENST00000495039 H1F0P07305 194 aaKnown RBP3.2□□□□□ -1.9
VPS50-219ENST00000495039 NR2F1P10589 423 aa3.2□□□□□ -1.9
VPS50-219ENST00000495039 CDR2Q01850 454 aa3.2□□□□□ -1.9
VPS50-219ENST00000495039 GPR17Q13304 367 aa3.2□□□□□ -1.9
VPS50-219ENST00000495039 CYP4A22Q5TCH4 519 aa3.2□□□□□ -1.9
VPS50-219ENST00000495039 GARNL3Q5VVW2 1013 aa3.2□□□□□ -1.9
VPS50-219ENST00000495039 GPR139Q6DWJ6 353 aa3.2□□□□□ -1.9
VPS50-219ENST00000495039 FBXO39Q8N4B4 442 aa3.2□□□□□ -1.9
VPS50-219ENST00000495039 MINDY1Q8N5J2 469 aa3.2□□□□□ -1.9
VPS50-219ENST00000495039 ZNF622Q969S3 477 aaKnown RBP eCLIP3.2□□□□□ -1.9
VPS50-219ENST00000495039 PTERQ96BW5 349 aa3.2□□□□□ -1.9
VPS50-219ENST00000495039 MTERF3Q96E29 417 aa3.2□□□□□ -1.9
VPS50-219ENST00000495039 ZNF582Q96NG8 517 aaPredicted RBP3.2□□□□□ -1.9
VPS50-219ENST00000495039 OR6C1Q96RD1 312 aa3.2□□□□□ -1.9
VPS50-219ENST00000495039 APOL6Q9BWW8 343 aa3.2□□□□□ -1.9
VPS50-219ENST00000495039 KLHL4Q9C0H6 718 aa3.2□□□□□ -1.9
VPS50-219ENST00000495039 SLA2Q9H6Q3 261 aa3.2□□□□□ -1.9
VPS50-219ENST00000495039 PANK3Q9H999 370 aa3.2□□□□□ -1.9
VPS50-219ENST00000495039 CHST11Q9NPF2 352 aa3.2□□□□□ -1.9
VPS50-219ENST00000495039 MBNL1Q9NR56 388 aaKnown RBP3.2□□□□□ -1.9
VPS50-219ENST00000495039 NPAP1Q9NZP6 1156 aa3.2□□□□□ -1.9
VPS50-219ENST00000495039 MORF4L1Q9UBU8 362 aa3.2□□□□□ -1.9
VPS50-219ENST00000495039 ZDHHC2Q9UIJ5 367 aa3.2□□□□□ -1.9
VPS50-219ENST00000495039 SLC7A7Q9UM01 511 aa3.2□□□□□ -1.9
VPS50-219ENST00000495039 TTLL3Q9Y4R7 772 aa3.2□□□□□ -1.9
VPS50-219ENST00000495039 MAGED1Q9Y5V3 778 aaPredicted RBP3.2□□□□□ -1.9
VPS50-219ENST00000495039 ZNF541Q9H0D2 1346 aa3.19□□□□□ -1.9
VPS50-219ENST00000495039 CROCCQ5TZA2 2017 aa3.19□□□□□ -1.9
VPS50-219ENST00000495039 hCG_1809904A0A1W2PP81 198 aa3.19□□□□□ -1.9
VPS50-219ENST00000495039 A0A1W2PPE2 198 aa3.19□□□□□ -1.9
VPS50-219ENST00000495039 A0A1W2PR64 198 aa3.19□□□□□ -1.9
VPS50-219ENST00000495039 MED19A0JLT2 244 aaPredicted RBP3.19□□□□□ -1.9
VPS50-219ENST00000495039 FIBPO43427 364 aa3.19□□□□□ -1.9
VPS50-219ENST00000495039 TSPAN1O60635 241 aa3.19□□□□□ -1.9
VPS50-219ENST00000495039 NXPH2O95156 264 aa3.19□□□□□ -1.9
VPS50-219ENST00000495039 AKR1B1P15121 316 aa3.19□□□□□ -1.9
VPS50-219ENST00000495039 CKMT2P17540 419 aa3.19□□□□□ -1.9
VPS50-219ENST00000495039 GABRA5P31644 462 aa3.19□□□□□ -1.9
VPS50-219ENST00000495039 RAD52P43351 418 aa3.19□□□□□ -1.9
VPS50-219ENST00000495039 LIG4P49917 911 aa3.19□□□□□ -1.9
VPS50-219ENST00000495039 CDH11P55287 796 aa3.19□□□□□ -1.9
VPS50-219ENST00000495039 HUNKP57058 714 aa3.19□□□□□ -1.9
VPS50-219ENST00000495039 CDK3Q00526 305 aa3.19□□□□□ -1.9
VPS50-219ENST00000495039 CALD1Q05682 793 aaKnown RBP3.19□□□□□ -1.9
VPS50-219ENST00000495039 PRKAA1Q13131 559 aa3.19□□□□□ -1.9
VPS50-219ENST00000495039 DRP2Q13474 957 aa3.19□□□□□ -1.9
VPS50-219ENST00000495039 BECN1Q14457 450 aa3.19□□□□□ -1.9
VPS50-219ENST00000495039 C16orf54Q6UWD8 224 aa3.19□□□□□ -1.9
VPS50-219ENST00000495039 PRPF39Q86UA1 669 aaKnown RBP3.19□□□□□ -1.9
VPS50-219ENST00000495039 CEP57Q86XR8 500 aa3.19□□□□□ -1.9
VPS50-219ENST00000495039 CCDC89Q8N998 374 aa3.19□□□□□ -1.9
VPS50-219ENST00000495039 LPGAT1Q92604 370 aa3.19□□□□□ -1.9
VPS50-219ENST00000495039 DAZLQ92904 295 aaKnown RBP3.19□□□□□ -1.9
VPS50-219ENST00000495039 ABHD1Q96SE0 405 aa3.19□□□□□ -1.9
VPS50-219ENST00000495039 KRT12Q99456 494 aa3.19□□□□□ -1.9
VPS50-219ENST00000495039 C16orf70Q9BSU1 422 aa3.19□□□□□ -1.9
VPS50-219ENST00000495039 RPP25Q9BUL9 199 aaKnown RBP3.19□□□□□ -1.9
VPS50-219ENST00000495039 SLC35C2Q9NQQ7 365 aa3.19□□□□□ -1.9
VPS50-219ENST00000495039 OLFML3Q9NRN5 406 aa3.19□□□□□ -1.9
VPS50-219ENST00000495039 ANKEF1Q9NU02 776 aa3.19□□□□□ -1.9
VPS50-219ENST00000495039 NUDT4Q9NZJ9 180 aa3.19□□□□□ -1.9
VPS50-219ENST00000495039 IGHV3OR16-10A0A075B7F0 116 aa3.18□□□□□ -1.9
VPS50-219ENST00000495039 PRSS51A0A1B0GVH4 220 aa3.18□□□□□ -1.9
VPS50-219ENST00000495039 MEX3AA1L020 520 aaKnown RBP3.18□□□□□ -1.9
VPS50-219ENST00000495039 SYNDIG1LA6NDD5 238 aa3.18□□□□□ -1.9
VPS50-219ENST00000495039 HEPACAM2A8MVW5 462 aa3.18□□□□□ -1.9
VPS50-219ENST00000495039 DNM1LO00429 736 aa3.18□□□□□ -1.9
VPS50-219ENST00000495039 SOCS3O14543 225 aa3.18□□□□□ -1.9
VPS50-219ENST00000495039 ADAM20O43506 726 aa3.18□□□□□ -1.9
VPS50-219ENST00000495039 XRCC3O43542 346 aa3.18□□□□□ -1.9
VPS50-219ENST00000495039 KHDRBS3O75525 346 aaKnown RBP3.18□□□□□ -1.9
VPS50-219ENST00000495039 CREG1O75629 220 aa3.18□□□□□ -1.9
VPS50-219ENST00000495039 CLDN1O95832 211 aa3.18□□□□□ -1.9
VPS50-219ENST00000495039 ABCB1P08183 1280 aaPredicted RBP3.18□□□□□ -1.9
VPS50-219ENST00000495039 MAGEA11P43364 429 aa3.18□□□□□ -1.9
VPS50-219ENST00000495039 RPS18P62269 152 aaKnown RBP3.18□□□□□ -1.9
VPS50-219ENST00000495039 TRA2BP62995 288 aaKnown RBP3.18□□□□□ -1.9
VPS50-219ENST00000495039 UBXN2AP68543 259 aa3.18□□□□□ -1.9
VPS50-219ENST00000495039 PRPF4BQ13523 1007 aaKnown RBP3.18□□□□□ -1.9
VPS50-219ENST00000495039 NR1D2Q14995 579 aa3.18□□□□□ -1.9
VPS50-219ENST00000495039 SNAPC1Q16533 368 aa3.18□□□□□ -1.9
VPS50-219ENST00000495039 HLA-BQ31612 363 aa3.18□□□□□ -1.9
VPS50-219ENST00000495039 WLSQ5T9L3 541 aa3.18□□□□□ -1.9
VPS50-219ENST00000495039 FIGLAQ6QHK4 219 aa3.18□□□□□ -1.9
VPS50-219ENST00000495039 DENND5BQ6ZUT9 1274 aa3.18□□□□□ -1.9
VPS50-219ENST00000495039 TMEM173Q86WV6 379 aaPredicted RBP3.18□□□□□ -1.9
VPS50-219ENST00000495039 HPS6Q86YV9 775 aa3.18□□□□□ -1.9
VPS50-219ENST00000495039 DNAJC22Q8N4W6 341 aa3.18□□□□□ -1.9
Retrieved 100 of 20,778 RNA–protein pairs in 31.7 ms