RNA–Protein interactions for RNA: ENST00000494672.1

CCDC66-222, Transcript of coiled-coil domain containing 66, human

TSL 4

Gene CCDC66, Length 577 nt, Biotype retained intron.

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CCDC66-222	ENST00000494672	GLRA2	P23416	452 aa		4.55	□□□□□ -1.68
CCDC66-222	ENST00000494672	ITGB8	P26012	769 aa		4.55	□□□□□ -1.68
CCDC66-222	ENST00000494672	CNTF	P26441	200 aa		4.55	□□□□□ -1.68
CCDC66-222	ENST00000494672	ALDH4A1	P30038	563 aa		4.55	□□□□□ -1.68
CCDC66-222	ENST00000494672	NMT1	P30419	496 aa	Known RBP	4.55	□□□□□ -1.68
CCDC66-222	ENST00000494672	CCR1	P32246	355 aa		4.55	□□□□□ -1.68
CCDC66-222	ENST00000494672	RFC2	P35250	354 aa		4.55	□□□□□ -1.68
CCDC66-222	ENST00000494672	ACAA2	P42765	397 aa	Known RBP	4.55	□□□□□ -1.68
CCDC66-222	ENST00000494672	STAR	P49675	285 aa		4.55	□□□□□ -1.68
CCDC66-222	ENST00000494672	GBX2	P52951	348 aa	Predicted RBP	4.55	□□□□□ -1.68
CCDC66-222	ENST00000494672	PSMC5	P62195	406 aa		4.55	□□□□□ -1.68
CCDC66-222	ENST00000494672	RPP30	P78346	268 aa	Known RBP	4.55	□□□□□ -1.68
CCDC66-222	ENST00000494672	IFI35	P80217	286 aa	Predicted RBP	4.55	□□□□□ -1.68
CCDC66-222	ENST00000494672	TRAF3	Q13114	568 aa		4.55	□□□□□ -1.68
CCDC66-222	ENST00000494672	CALCOCO2	Q13137	446 aa		4.55	□□□□□ -1.68
CCDC66-222	ENST00000494672	SF3B4	Q15427	424 aa	Known RBP eCLIP	4.55	□□□□□ -1.68
CCDC66-222	ENST00000494672	TRADD	Q15628	312 aa		4.55	□□□□□ -1.68
CCDC66-222	ENST00000494672	SGSM1	Q2NKQ1	1148 aa		4.55	□□□□□ -1.68
CCDC66-222	ENST00000494672	C1orf141	Q5JVX7	400 aa		4.55	□□□□□ -1.68
CCDC66-222	ENST00000494672	HAUS3	Q68CZ6	603 aa		4.55	□□□□□ -1.68
CCDC66-222	ENST00000494672	PTRHD1	Q6GMV3	140 aa	Known RBP	4.55	□□□□□ -1.68
CCDC66-222	ENST00000494672	WBP2NL	Q6ICG8	309 aa		4.55	□□□□□ -1.68
CCDC66-222	ENST00000494672	DGAT2L7P	Q6IED9	249 aa		4.55	□□□□□ -1.68
CCDC66-222	ENST00000494672	JMJD6	Q6NYC1	403 aa	Predicted RBP	4.55	□□□□□ -1.68
CCDC66-222	ENST00000494672	CASC4	Q6P4E1	433 aa		4.55	□□□□□ -1.68
CCDC66-222	ENST00000494672	KLHL24	Q6TFL4	600 aa		4.55	□□□□□ -1.68
CCDC66-222	ENST00000494672	TMTC3	Q6ZXV5	915 aa		4.55	□□□□□ -1.68
CCDC66-222	ENST00000494672	ANO5	Q75V66	913 aa		4.55	□□□□□ -1.68
CCDC66-222	ENST00000494672	LONP2	Q86WA8	852 aa		4.55	□□□□□ -1.68
CCDC66-222	ENST00000494672	TMC8	Q8IU68	726 aa		4.55	□□□□□ -1.68
CCDC66-222	ENST00000494672	CDKL3	Q8IVW4	592 aa	Predicted RBP	4.55	□□□□□ -1.68
CCDC66-222	ENST00000494672	MAP7D3	Q8IWC1	876 aa		4.55	□□□□□ -1.68
CCDC66-222	ENST00000494672	PHC2	Q8IXK0	858 aa		4.55	□□□□□ -1.68
CCDC66-222	ENST00000494672	SYCE1	Q8N0S2	351 aa		4.55	□□□□□ -1.68
CCDC66-222	ENST00000494672	PYROXD2	Q8N2H3	581 aa		4.55	□□□□□ -1.68
CCDC66-222	ENST00000494672	LIX1	Q8N485	282 aa		4.55	□□□□□ -1.68
CCDC66-222	ENST00000494672	PTGR2	Q8N8N7	351 aa	Predicted RBP	4.55	□□□□□ -1.68
CCDC66-222	ENST00000494672	PPFIBP2	Q8ND30	876 aa		4.55	□□□□□ -1.68
CCDC66-222	ENST00000494672	SLC24A4	Q8NFF2	622 aa		4.55	□□□□□ -1.68
CCDC66-222	ENST00000494672	OR9A1P	Q8NGU1	263 aa		4.55	□□□□□ -1.68
CCDC66-222	ENST00000494672	SCAMP5	Q8TAC9	235 aa		4.55	□□□□□ -1.68
CCDC66-222	ENST00000494672	RAD51AP1	Q96B01	352 aa		4.55	□□□□□ -1.68
CCDC66-222	ENST00000494672	IGSF21	Q96ID5	467 aa		4.55	□□□□□ -1.68
CCDC66-222	ENST00000494672	OPALIN	Q96PE5	141 aa		4.55	□□□□□ -1.68
CCDC66-222	ENST00000494672	TEFM	Q96QE5	360 aa	Known RBP	4.55	□□□□□ -1.68
CCDC66-222	ENST00000494672	PLIN2	Q99541	437 aa		4.55	□□□□□ -1.68
CCDC66-222	ENST00000494672	PKP4	Q99569	1192 aa		4.55	□□□□□ -1.68
CCDC66-222	ENST00000494672	SLC29A1	Q99808	456 aa		4.55	□□□□□ -1.68
CCDC66-222	ENST00000494672	CITED2	Q99967	270 aa	Predicted RBP	4.55	□□□□□ -1.68
CCDC66-222	ENST00000494672	CCDC28B	Q9BUN5	200 aa		4.55	□□□□□ -1.68
CCDC66-222	ENST00000494672	NUP85	Q9BW27	656 aa		4.55	□□□□□ -1.68
CCDC66-222	ENST00000494672	C6orf62	Q9GZU0	229 aa	Predicted RBP	4.55	□□□□□ -1.68
CCDC66-222	ENST00000494672	RHBG	Q9H310	441 aa		4.55	□□□□□ -1.68
CCDC66-222	ENST00000494672	DDX31	Q9H8H2	851 aa	Known RBP	4.55	□□□□□ -1.68
CCDC66-222	ENST00000494672	PRDM8	Q9NQV8	689 aa		4.55	□□□□□ -1.68
CCDC66-222	ENST00000494672	OCIAD1	Q9NX40	245 aa		4.55	□□□□□ -1.68
CCDC66-222	ENST00000494672	KLHL9	Q9P2J3	617 aa		4.55	□□□□□ -1.68
CCDC66-222	ENST00000494672	UXT	Q9UBK9	157 aa	Predicted RBP	4.55	□□□□□ -1.68
CCDC66-222	ENST00000494672	CPSF3	Q9UKF6	684 aa	Known RBP	4.55	□□□□□ -1.68
CCDC66-222	ENST00000494672	ARHGAP26	Q9UNA1	814 aa		4.55	□□□□□ -1.68
CCDC66-222	ENST00000494672	RCE1	Q9Y256	329 aa		4.55	□□□□□ -1.68
CCDC66-222	ENST00000494672	DNAJC16	Q9Y2G8	782 aa		4.55	□□□□□ -1.68
CCDC66-222	ENST00000494672	RPH3A	Q9Y2J0	694 aa	Predicted RBP	4.55	□□□□□ -1.68
CCDC66-222	ENST00000494672	FAM169A	Q9Y6X4	670 aa		4.55	□□□□□ -1.68
CCDC66-222	ENST00000494672	INSR	P06213	1382 aa		4.54	□□□□□ -1.68
CCDC66-222	ENST00000494672	FRMPD4	Q14CM0	1322 aa		4.54	□□□□□ -1.68
CCDC66-222	ENST00000494672		A0A087WYN8	130 aa		4.54	□□□□□ -1.68
CCDC66-222	ENST00000494672	IGHV4-28	A0A0C4DH34	117 aa		4.54	□□□□□ -1.68
CCDC66-222	ENST00000494672		A0A1W2PQ67	120 aa		4.54	□□□□□ -1.68
CCDC66-222	ENST00000494672	TTC26	A0AVF1	554 aa		4.54	□□□□□ -1.68
CCDC66-222	ENST00000494672	TYW5	A2RUC4	315 aa	Known RBP	4.54	□□□□□ -1.68
CCDC66-222	ENST00000494672	MIF4GD	A9UHW6	222 aa	Known RBP	4.54	□□□□□ -1.68
CCDC66-222	ENST00000494672	TMEM114	B3SHH9	223 aa		4.54	□□□□□ -1.68
CCDC66-222	ENST00000494672		E9PBE3	544 aa		4.54	□□□□□ -1.68
CCDC66-222	ENST00000494672	XPO1	O14980	1071 aa	Known RBP	4.54	□□□□□ -1.68
CCDC66-222	ENST00000494672	CACNG3	O60359	315 aa		4.54	□□□□□ -1.68
CCDC66-222	ENST00000494672	SYNCRIP	O60506	623 aa	Known RBP	4.54	□□□□□ -1.68
CCDC66-222	ENST00000494672	CBR3	O75828	277 aa		4.54	□□□□□ -1.68
CCDC66-222	ENST00000494672	KRT36	O76013	467 aa		4.54	□□□□□ -1.68
CCDC66-222	ENST00000494672	DDN	O94850	711 aa	Predicted RBP	4.54	□□□□□ -1.68
CCDC66-222	ENST00000494672	PIGN	O95427	931 aa		4.54	□□□□□ -1.68
CCDC66-222	ENST00000494672	OXSR1	O95747	527 aa	Predicted RBP	4.54	□□□□□ -1.68
CCDC66-222	ENST00000494672	GGPS1	O95749	300 aa		4.54	□□□□□ -1.68
CCDC66-222	ENST00000494672	GNA14	O95837	355 aa		4.54	□□□□□ -1.68
CCDC66-222	ENST00000494672	TFRC	P02786	760 aa	Known RBP	4.54	□□□□□ -1.68
CCDC66-222	ENST00000494672	FYN	P06241	537 aa		4.54	□□□□□ -1.68
CCDC66-222	ENST00000494672	FGF4	P08620	206 aa		4.54	□□□□□ -1.68
CCDC66-222	ENST00000494672	RPS17	P08708	135 aa	Known RBP	4.54	□□□□□ -1.68
CCDC66-222	ENST00000494672	HSMCR30	P0CW71	290 aa		4.54	□□□□□ -1.68
CCDC66-222	ENST00000494672	KRT5	P13647	590 aa		4.54	□□□□□ -1.68
CCDC66-222	ENST00000494672	HOXB8	P17481	243 aa	Predicted RBP	4.54	□□□□□ -1.68
CCDC66-222	ENST00000494672	HLA-F	P30511	346 aa		4.54	□□□□□ -1.68
CCDC66-222	ENST00000494672	HOXD13	P35453	343 aa		4.54	□□□□□ -1.68
CCDC66-222	ENST00000494672	TMED10	P49755	219 aa	Known RBP	4.54	□□□□□ -1.68
CCDC66-222	ENST00000494672	TUB	P50607	506 aa		4.54	□□□□□ -1.68
CCDC66-222	ENST00000494672	MFAP3	P55082	362 aa		4.54	□□□□□ -1.68
CCDC66-222	ENST00000494672	HUNK	P57058	714 aa		4.54	□□□□□ -1.68
CCDC66-222	ENST00000494672	STARD6	P59095	220 aa		4.54	□□□□□ -1.68
CCDC66-222	ENST00000494672	GMFB	P60983	142 aa		4.54	□□□□□ -1.68
CCDC66-222	ENST00000494672	SRP54	P61011	504 aa	Known RBP	4.54	□□□□□ -1.68

Retrieved 100 of 20,778 RNA–protein pairs in 24.3 ms