RNA–Protein interactions for RNA: ENST00000494566.5

CCDC88B-210, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 2,909 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-210ENST00000494566 DAG1Q14118 895 aa16.14■□□□□ 0.17
CCDC88B-210ENST00000494566 ZNF829Q3KNS6 432 aaPredicted RBP16.14■□□□□ 0.17
CCDC88B-210ENST00000494566 PLEKHG6Q3KR16 790 aa16.14■□□□□ 0.17
CCDC88B-210ENST00000494566 SPANXN4Q5MJ08 99 aa16.14■□□□□ 0.17
CCDC88B-210ENST00000494566 CERS6Q6ZMG9 384 aa16.14■□□□□ 0.17
CCDC88B-210ENST00000494566 HID1Q8IV36 788 aa16.14■□□□□ 0.17
CCDC88B-210ENST00000494566 LIX1Q8N485 282 aa16.14■□□□□ 0.17
CCDC88B-210ENST00000494566 PNPT1Q8TCS8 783 aaKnown RBP16.14■□□□□ 0.17
CCDC88B-210ENST00000494566 ELMO1Q92556 727 aa16.14■□□□□ 0.17
CCDC88B-210ENST00000494566 RHBDF1Q96CC6 855 aa16.14■□□□□ 0.17
CCDC88B-210ENST00000494566 RASSF1Q9NS23 344 aa16.14■□□□□ 0.17
CCDC88B-210ENST00000494566 HECAQ9UBI9 543 aaPredicted RBP16.14■□□□□ 0.17
CCDC88B-210ENST00000494566 ZNF490Q9ULM2 529 aaPredicted RBP16.14■□□□□ 0.17
CCDC88B-210ENST00000494566 NEUROG3Q9Y4Z2 214 aa16.14■□□□□ 0.17
CCDC88B-210ENST00000494566 OBSL1O75147 1896 aa16.13■□□□□ 0.17
CCDC88B-210ENST00000494566 SCN8AQ9UQD0 1980 aa16.13■□□□□ 0.17
CCDC88B-210ENST00000494566 GFRA2O00451 464 aa16.13■□□□□ 0.17
CCDC88B-210ENST00000494566 HTR1AP08908 422 aa16.13■□□□□ 0.17
CCDC88B-210ENST00000494566 LHCGRP22888 699 aa16.13■□□□□ 0.17
CCDC88B-210ENST00000494566 EIF2B2P49770 351 aaKnown RBP16.13■□□□□ 0.17
CCDC88B-210ENST00000494566 HLCSP50747 726 aa16.13■□□□□ 0.17
CCDC88B-210ENST00000494566 FOXM1Q08050 763 aa16.13■□□□□ 0.17
CCDC88B-210ENST00000494566 COQ5Q5HYK3 327 aa16.13■□□□□ 0.17
CCDC88B-210ENST00000494566 GPRC6AQ5T6X5 926 aa16.13■□□□□ 0.17
CCDC88B-210ENST00000494566 ZNF783Q6ZMS7 281 aa16.13■□□□□ 0.17
CCDC88B-210ENST00000494566 PDPRQ8NCN5 879 aa16.13■□□□□ 0.17
CCDC88B-210ENST00000494566 CGREF1Q99674 301 aa16.13■□□□□ 0.17
CCDC88B-210ENST00000494566 HERC2P3Q9BVR0 1158 aa16.13■□□□□ 0.17
CCDC88B-210ENST00000494566 LRRC3Q9BY71 257 aa16.13■□□□□ 0.17
CCDC88B-210ENST00000494566 ATP13A3Q9H7F0 1226 aa16.13■□□□□ 0.17
CCDC88B-210ENST00000494566 HCFC1R1Q9NWW0 138 aa16.13■□□□□ 0.17
CCDC88B-210ENST00000494566 SLCO3A1Q9UIG8 710 aa16.13■□□□□ 0.17
CCDC88B-210ENST00000494566 CCL27Q9Y4X3 112 aa16.13■□□□□ 0.17
CCDC88B-210ENST00000494566 OARD1Q9Y530 152 aa16.13■□□□□ 0.17
CCDC88B-210ENST00000494566 SEC22BO75396 215 aa16.13■□□□□ 0.17
CCDC88B-210ENST00000494566 UGT2B4P06133 528 aa16.13■□□□□ 0.17
CCDC88B-210ENST00000494566 CD9P21926 228 aa16.13■□□□□ 0.17
CCDC88B-210ENST00000494566 DGKAP23743 735 aa16.13■□□□□ 0.17
CCDC88B-210ENST00000494566 B4GALNT1Q00973 533 aa16.13■□□□□ 0.17
CCDC88B-210ENST00000494566 OCA2Q04671 838 aa16.13■□□□□ 0.17
CCDC88B-210ENST00000494566 CD47Q08722 323 aa16.13■□□□□ 0.17
CCDC88B-210ENST00000494566 VAC14Q08AM6 782 aa16.13■□□□□ 0.17
CCDC88B-210ENST00000494566 DPY19L1Q2PZI1 675 aa16.13■□□□□ 0.17
CCDC88B-210ENST00000494566 POM121L1PQ3SYA9 428 aa16.13■□□□□ 0.17
CCDC88B-210ENST00000494566 BROXQ5VW32 411 aa16.13■□□□□ 0.17
CCDC88B-210ENST00000494566 SULT1C3Q6IMI6 304 aa16.13■□□□□ 0.17
CCDC88B-210ENST00000494566 SUSD1Q6UWL2 747 aa16.13■□□□□ 0.17
CCDC88B-210ENST00000494566 SPARTQ8N0X7 666 aa16.13■□□□□ 0.17
CCDC88B-210ENST00000494566 OR2T12Q8NG77 320 aa16.13■□□□□ 0.17
CCDC88B-210ENST00000494566 VOPP1Q96AW1 172 aa16.13■□□□□ 0.17
CCDC88B-210ENST00000494566 ULK4Q96C45 1275 aa16.13■□□□□ 0.17
CCDC88B-210ENST00000494566 PDLIM5Q96HC4 596 aaKnown RBP16.13■□□□□ 0.17
CCDC88B-210ENST00000494566 CD244Q9BZW8 370 aa16.13■□□□□ 0.17
CCDC88B-210ENST00000494566 RIBC2Q9H4K1 309 aa16.13■□□□□ 0.17
CCDC88B-210ENST00000494566 HEBP1Q9NRV9 189 aa16.13■□□□□ 0.17
CCDC88B-210ENST00000494566 PAK1IP1Q9NWT1 392 aaPredicted RBP16.13■□□□□ 0.17
CCDC88B-210ENST00000494566 BAG5Q9UL15 447 aa16.13■□□□□ 0.17
CCDC88B-210ENST00000494566 TNPO3Q9Y5L0 923 aaKnown RBP16.13■□□□□ 0.17
CCDC88B-210ENST00000494566 TRIM43BA6NCK2 446 aa16.12■□□□□ 0.17
CCDC88B-210ENST00000494566 TGM5O43548 720 aa16.12■□□□□ 0.17
CCDC88B-210ENST00000494566 PRSS23O95084 383 aa16.12■□□□□ 0.17
CCDC88B-210ENST00000494566 ZNF682O95780 498 aa16.12■□□□□ 0.17
CCDC88B-210ENST00000494566 ALPLP05186 524 aa16.12■□□□□ 0.17
CCDC88B-210ENST00000494566 ACRP10323 421 aa16.12■□□□□ 0.17
CCDC88B-210ENST00000494566 SRCP12931 536 aa16.12■□□□□ 0.17
CCDC88B-210ENST00000494566 HLA-FP30511 346 aa16.12■□□□□ 0.17
CCDC88B-210ENST00000494566 SPAM1P38567 509 aa16.12■□□□□ 0.17
CCDC88B-210ENST00000494566 ZXDCQ2QGD7 858 aaPredicted RBP16.12■□□□□ 0.17
CCDC88B-210ENST00000494566 TRIM16LQ309B1 348 aa16.12■□□□□ 0.17
CCDC88B-210ENST00000494566 ZNF773Q6PK81 442 aa16.12■□□□□ 0.17
CCDC88B-210ENST00000494566 VRK3Q8IV63 474 aa16.12■□□□□ 0.17
CCDC88B-210ENST00000494566 RGL4Q8IZJ4 473 aa16.12■□□□□ 0.17
CCDC88B-210ENST00000494566 C8orf59Q8N0T1 100 aaPredicted RBP16.12■□□□□ 0.17
CCDC88B-210ENST00000494566 NXPE1Q8N323 547 aa16.12■□□□□ 0.17
CCDC88B-210ENST00000494566 OR13F1Q8NGS4 319 aa16.12■□□□□ 0.17
CCDC88B-210ENST00000494566 NDNFQ8TB73 568 aa16.12■□□□□ 0.17
CCDC88B-210ENST00000494566 OSCP1Q8WVF1 389 aa16.12■□□□□ 0.17
CCDC88B-210ENST00000494566 ISG20Q96AZ6 181 aaKnown RBP16.12■□□□□ 0.17
CCDC88B-210ENST00000494566 CORO1BQ9BR76 489 aa16.12■□□□□ 0.17
CCDC88B-210ENST00000494566 AMBNQ9NP70 447 aa16.12■□□□□ 0.17
CCDC88B-210ENST00000494566 LSM7Q9UK45 103 aaKnown RBP16.12■□□□□ 0.17
CCDC88B-210ENST00000494566 IGSF6O95976 241 aa16.12■□□□□ 0.17
CCDC88B-210ENST00000494566 ANXA6P08133 673 aa16.12■□□□□ 0.17
CCDC88B-210ENST00000494566 ENO2P09104 434 aaPredicted RBP16.12■□□□□ 0.17
CCDC88B-210ENST00000494566 CCR7P32248 378 aa16.12■□□□□ 0.17
CCDC88B-210ENST00000494566 SF1Q15637 639 aaKnown RBP16.12■□□□□ 0.17
CCDC88B-210ENST00000494566 FAM98BQ52LJ0 330 aaKnown RBP16.12■□□□□ 0.17
CCDC88B-210ENST00000494566 PAGE2BQ5JRK9 111 aa16.12■□□□□ 0.17
CCDC88B-210ENST00000494566 ZNF648Q5T619 568 aaPredicted RBP16.12■□□□□ 0.17
CCDC88B-210ENST00000494566 ASTLQ6HA08 431 aaPredicted RBP16.12■□□□□ 0.17
CCDC88B-210ENST00000494566 PTRH1Q86Y79 214 aaKnown RBP16.12■□□□□ 0.17
CCDC88B-210ENST00000494566 CROCCP3Q8IVE0 287 aa16.12■□□□□ 0.17
CCDC88B-210ENST00000494566 CHST14Q8NCH0 376 aa16.12■□□□□ 0.17
CCDC88B-210ENST00000494566 OR2AP1Q8NGE2 309 aa16.12■□□□□ 0.17
CCDC88B-210ENST00000494566 MRPS31Q92665 395 aaKnown RBP16.12■□□□□ 0.17
CCDC88B-210ENST00000494566 GLMNQ92990 594 aa16.12■□□□□ 0.17
CCDC88B-210ENST00000494566 REV3LO60673 3130 aa16.12■□□□□ 0.17
CCDC88B-210ENST00000494566 BCAS1O75363 584 aaPredicted RBP16.12■□□□□ 0.17
CCDC88B-210ENST00000494566 DEAF1O75398 565 aaPredicted RBP16.12■□□□□ 0.17
CCDC88B-210ENST00000494566 GLUD1P00367 558 aa16.12■□□□□ 0.17
Retrieved 100 of 20,778 RNA–protein pairs in 25.4 ms