RNA–Protein interactions for RNA: ENST00000490557.1

HMGB1P38-201, Transcript of high mobility group box 1 pseudogene 38, humanhuman

BASIC

Gene HMGB1P38, Length 577 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P38-201ENST00000490557 PHLDA2Q53GA4 152 aa4.42□□□□□ -1.7
HMGB1P38-201ENST00000490557 KLHL26Q53HC5 615 aa4.42□□□□□ -1.7
HMGB1P38-201ENST00000490557 SYT14P1Q58G82 188 aa4.42□□□□□ -1.7
HMGB1P38-201ENST00000490557 SPECC1Q5M775 1068 aa4.42□□□□□ -1.7
HMGB1P38-201ENST00000490557 FFAR4Q5NUL3 377 aa4.42□□□□□ -1.7
HMGB1P38-201ENST00000490557 ARMC3Q5W041 872 aa4.42□□□□□ -1.7
HMGB1P38-201ENST00000490557 CST9LP1Q5W188 147 aa4.42□□□□□ -1.7
HMGB1P38-201ENST00000490557 ADAM5Q6NVV9 412 aa4.42□□□□□ -1.7
HMGB1P38-201ENST00000490557 TMPRSS11BQ86T26 416 aa4.42□□□□□ -1.7
HMGB1P38-201ENST00000490557 APLFQ8IW19 511 aaPredicted RBP4.42□□□□□ -1.7
HMGB1P38-201ENST00000490557 CCDC191Q8NCU4 936 aa4.42□□□□□ -1.7
HMGB1P38-201ENST00000490557 OR6J1Q8NGC5 347 aa4.42□□□□□ -1.7
HMGB1P38-201ENST00000490557 MOB3AQ96BX8 217 aa4.42□□□□□ -1.7
HMGB1P38-201ENST00000490557 ZNF653Q96CK0 615 aa4.42□□□□□ -1.7
HMGB1P38-201ENST00000490557 RMDN1Q96DB5 314 aa4.42□□□□□ -1.7
HMGB1P38-201ENST00000490557 LGALS12Q96DT0 336 aa4.42□□□□□ -1.7
HMGB1P38-201ENST00000490557 LRR1Q96L50 414 aa4.42□□□□□ -1.7
HMGB1P38-201ENST00000490557 GPR88Q9GZN0 384 aa4.42□□□□□ -1.7
HMGB1P38-201ENST00000490557 SDR39U1Q9NRG7 319 aaPredicted RBP4.42□□□□□ -1.7
HMGB1P38-201ENST00000490557 FRMD4AQ9P2Q2 1039 aaPredicted RBP4.42□□□□□ -1.7
HMGB1P38-201ENST00000490557 PCDH11YQ9BZA8 1340 aa4.42□□□□□ -1.7
HMGB1P38-201ENST00000490557 TRIM77I1YAP6 450 aa4.41□□□□□ -1.7
HMGB1P38-201ENST00000490557 C22orf31O95567 290 aa4.41□□□□□ -1.7
HMGB1P38-201ENST00000490557 CDH3P22223 829 aa4.41□□□□□ -1.7
HMGB1P38-201ENST00000490557 ASCL1P50553 236 aa4.41□□□□□ -1.7
HMGB1P38-201ENST00000490557 KRTAP10-9P60411 292 aa4.41□□□□□ -1.7
HMGB1P38-201ENST00000490557 PMP22Q01453 160 aa4.41□□□□□ -1.7
HMGB1P38-201ENST00000490557 PPIGQ13427 754 aaKnown RBP eCLIP4.41□□□□□ -1.7
HMGB1P38-201ENST00000490557 CCDC6Q16204 474 aa4.41□□□□□ -1.7
HMGB1P38-201ENST00000490557 CDC37Q16543 378 aaPredicted RBP4.41□□□□□ -1.7
HMGB1P38-201ENST00000490557 KYNUQ16719 465 aa4.41□□□□□ -1.7
HMGB1P38-201ENST00000490557 VWC2Q2TAL6 325 aa4.41□□□□□ -1.7
HMGB1P38-201ENST00000490557 ITPRIPL2Q3MIP1 535 aa4.41□□□□□ -1.7
HMGB1P38-201ENST00000490557 TMEM30BQ3MIR4 351 aa4.41□□□□□ -1.7
HMGB1P38-201ENST00000490557 CCDC92Q53HC0 331 aaPredicted RBP4.41□□□□□ -1.7
HMGB1P38-201ENST00000490557 TCP11X2Q5H9J9 407 aa4.41□□□□□ -1.7
HMGB1P38-201ENST00000490557 CEP85LQ5SZL2 805 aa4.41□□□□□ -1.7
HMGB1P38-201ENST00000490557 C20orf194Q5TEA3 1177 aa4.41□□□□□ -1.7
HMGB1P38-201ENST00000490557 FAM53AQ6NSI3 398 aaPredicted RBP4.41□□□□□ -1.7
HMGB1P38-201ENST00000490557 FAM198BQ6UWH4 519 aa4.41□□□□□ -1.7
HMGB1P38-201ENST00000490557 EID3Q8N140 333 aa4.41□□□□□ -1.7
HMGB1P38-201ENST00000490557 ZNF611Q8N823 705 aa4.41□□□□□ -1.7
HMGB1P38-201ENST00000490557 NIPA2Q8N8Q9 360 aa4.41□□□□□ -1.7
HMGB1P38-201ENST00000490557 OR11H4Q8NGC9 324 aa4.41□□□□□ -1.7
HMGB1P38-201ENST00000490557 HCAR2Q8TDS4 363 aa4.41□□□□□ -1.7
HMGB1P38-201ENST00000490557 PHLDA1Q8WV24 401 aaPredicted RBP4.41□□□□□ -1.7
HMGB1P38-201ENST00000490557 MRPS27Q92552 414 aaKnown RBP4.41□□□□□ -1.7
HMGB1P38-201ENST00000490557 ARSGQ96EG1 525 aa4.41□□□□□ -1.7
HMGB1P38-201ENST00000490557 CFAP57Q96MR6 1250 aa4.41□□□□□ -1.7
HMGB1P38-201ENST00000490557 RAD9AQ99638 391 aa4.41□□□□□ -1.7
HMGB1P38-201ENST00000490557 RBM4Q9BWF3 364 aaKnown RBP4.41□□□□□ -1.7
HMGB1P38-201ENST00000490557 KRTAP2-2Q9BYT5 123 aa4.41□□□□□ -1.7
HMGB1P38-201ENST00000490557 PITPNM3Q9BZ71 974 aa4.41□□□□□ -1.7
HMGB1P38-201ENST00000490557 PRRG4Q9BZD6 226 aa4.41□□□□□ -1.7
HMGB1P38-201ENST00000490557 PPANQ9NQ55 473 aaKnown RBP4.41□□□□□ -1.7
HMGB1P38-201ENST00000490557 LRWD1Q9UFC0 647 aa4.41□□□□□ -1.7
HMGB1P38-201ENST00000490557 ERRFI1Q9UJM3 462 aaPredicted RBP4.41□□□□□ -1.7
HMGB1P38-201ENST00000490557 KCNK7Q9Y2U2 307 aa4.41□□□□□ -1.7
HMGB1P38-201ENST00000490557 FEZF1A0PJY2 475 aa4.4□□□□□ -1.71
HMGB1P38-201ENST00000490557 FAM170AA1A519 330 aa4.4□□□□□ -1.71
HMGB1P38-201ENST00000490557 NEMP2A6NFY4 417 aa4.4□□□□□ -1.71
HMGB1P38-201ENST00000490557 ZG16O60844 167 aa4.4□□□□□ -1.71
HMGB1P38-201ENST00000490557 CDC123O75794 336 aaPredicted RBP4.4□□□□□ -1.71
HMGB1P38-201ENST00000490557 IGHV2-70P01814 119 aa4.4□□□□□ -1.71
HMGB1P38-201ENST00000490557 FYNP06241 537 aa4.4□□□□□ -1.71
HMGB1P38-201ENST00000490557 FRMD6-AS1P0C7T7 363 aa4.4□□□□□ -1.71
HMGB1P38-201ENST00000490557 HAPLN1P10915 354 aaPredicted RBP4.4□□□□□ -1.71
HMGB1P38-201ENST00000490557 GNB3P16520 340 aa4.4□□□□□ -1.71
HMGB1P38-201ENST00000490557 ERCC2P18074 760 aa4.4□□□□□ -1.71
HMGB1P38-201ENST00000490557 MAGEA11P43364 429 aa4.4□□□□□ -1.71
HMGB1P38-201ENST00000490557 CCR10P46092 362 aa4.4□□□□□ -1.71
HMGB1P38-201ENST00000490557 NR0B1P51843 470 aaKnown RBP4.4□□□□□ -1.71
HMGB1P38-201ENST00000490557 HNRNPKP61978 463 aaKnown RBP eCLIP4.4□□□□□ -1.71
HMGB1P38-201ENST00000490557 ZNF415Q09FC8 603 aa4.4□□□□□ -1.71
HMGB1P38-201ENST00000490557 CUL3Q13618 768 aa4.4□□□□□ -1.71
HMGB1P38-201ENST00000490557 TNIP1Q15025 636 aa4.4□□□□□ -1.71
HMGB1P38-201ENST00000490557 CYP4A22Q5TCH4 519 aa4.4□□□□□ -1.71
HMGB1P38-201ENST00000490557 PRR27Q6MZM9 219 aa4.4□□□□□ -1.71
HMGB1P38-201ENST00000490557 GSG1LQ6UXU4 331 aa4.4□□□□□ -1.71
HMGB1P38-201ENST00000490557 CHST3Q7LGC8 479 aa4.4□□□□□ -1.71
HMGB1P38-201ENST00000490557 NUP54Q7Z3B4 507 aa4.4□□□□□ -1.71
HMGB1P38-201ENST00000490557 RTN4RL2Q86UN3 420 aa4.4□□□□□ -1.71
HMGB1P38-201ENST00000490557 ZSCAN30Q86W11 494 aa4.4□□□□□ -1.71
HMGB1P38-201ENST00000490557 MAPKAPK5-AS1Q8N8E1 139 aa4.4□□□□□ -1.71
HMGB1P38-201ENST00000490557 THAP8Q8NA92 274 aa4.4□□□□□ -1.71
HMGB1P38-201ENST00000490557 TDRD5Q8NAT2 981 aaKnown RBP4.4□□□□□ -1.71
HMGB1P38-201ENST00000490557 TMEM178AQ8NBL3 297 aa4.4□□□□□ -1.71
HMGB1P38-201ENST00000490557 DDHD1Q8NEL9 900 aa4.4□□□□□ -1.71
HMGB1P38-201ENST00000490557 OR13C3Q8NGS6 347 aa4.4□□□□□ -1.71
HMGB1P38-201ENST00000490557 Q9N2K0 584 aa4.4□□□□□ -1.71
HMGB1P38-201ENST00000490557 MYNNQ9NPC7 610 aa4.4□□□□□ -1.71
HMGB1P38-201ENST00000490557 ZNF701Q9NV72 531 aaPredicted RBP4.4□□□□□ -1.71
HMGB1P38-201ENST00000490557 INTS9Q9NV88 658 aaKnown RBP4.4□□□□□ -1.71
HMGB1P38-201ENST00000490557 WDR35Q9P2L0 1181 aa4.4□□□□□ -1.71
HMGB1P38-201ENST00000490557 CFDP1Q9UEE9 299 aaPredicted RBP4.4□□□□□ -1.71
HMGB1P38-201ENST00000490557 RNF150Q9ULK6 438 aa4.4□□□□□ -1.71
HMGB1P38-201ENST00000490557 MRPS28Q9Y2Q9 187 aaKnown RBP4.4□□□□□ -1.71
HMGB1P38-201ENST00000490557 TMED3Q9Y3Q3 217 aa4.4□□□□□ -1.71
HMGB1P38-201ENST00000490557 UBE2CO00762 179 aa4.39□□□□□ -1.71
HMGB1P38-201ENST00000490557 CLDN4O14493 209 aa4.39□□□□□ -1.71
Retrieved 100 of 20,778 RNA–protein pairs in 31.4 ms