RNA–Protein interactions for RNA: ENST00000487284.2

CUX1-209, Transcript of cut like homeobox 1, humanhuman

TSL 2

Gene CUX1, Length 1,566 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-209ENST00000487284 UBDO15205 165 aa13.81□□□□□ -0.2
CUX1-209ENST00000487284 GSC2O15499 205 aa13.81□□□□□ -0.2
CUX1-209ENST00000487284 HRO43593 1189 aa13.81□□□□□ -0.2
CUX1-209ENST00000487284 ATP6AP2O75787 350 aa13.81□□□□□ -0.2
CUX1-209ENST00000487284 GPR89BP0CG08 455 aa13.81□□□□□ -0.2
CUX1-209ENST00000487284 PRR35P0CG20 571 aa13.81□□□□□ -0.2
CUX1-209ENST00000487284 SP9P0CG40 484 aa13.81□□□□□ -0.2
CUX1-209ENST00000487284 EPB42P16452 691 aa13.81□□□□□ -0.2
CUX1-209ENST00000487284 PDHA2P29803 388 aa13.81□□□□□ -0.2
CUX1-209ENST00000487284 ATP4BP51164 291 aa13.81□□□□□ -0.2
CUX1-209ENST00000487284 CCNG1P51959 295 aa13.81□□□□□ -0.2
CUX1-209ENST00000487284 PLOD1Q02809 727 aaPredicted RBP13.81□□□□□ -0.2
CUX1-209ENST00000487284 ABRQ12979 859 aa13.81□□□□□ -0.2
CUX1-209ENST00000487284 SQLEQ14534 574 aa13.81□□□□□ -0.2
CUX1-209ENST00000487284 NFATC4Q14934 902 aa13.81□□□□□ -0.2
CUX1-209ENST00000487284 ZNF528Q3MIS6 628 aa13.81□□□□□ -0.2
CUX1-209ENST00000487284 EEF1AKMT2Q5JPI9 291 aaKnown RBP13.81□□□□□ -0.2
CUX1-209ENST00000487284 PMS2CLQ68D20 193 aa13.81□□□□□ -0.2
CUX1-209ENST00000487284 RNF165Q6ZSG1 346 aa13.81□□□□□ -0.2
CUX1-209ENST00000487284 LPCAT2Q7L5N7 544 aa13.81□□□□□ -0.2
CUX1-209ENST00000487284 HOMEZQ8IX15 550 aa13.81□□□□□ -0.2
CUX1-209ENST00000487284 RGL4Q8IZJ4 473 aa13.81□□□□□ -0.2
CUX1-209ENST00000487284 OXR1Q8N573 874 aa13.81□□□□□ -0.2
CUX1-209ENST00000487284 CDYL2Q8N8U2 506 aa13.81□□□□□ -0.2
CUX1-209ENST00000487284 MARK4Q96L34 752 aa13.81□□□□□ -0.2
CUX1-209ENST00000487284 CDK15Q96Q40 435 aa13.81□□□□□ -0.2
CUX1-209ENST00000487284 MIR1-1HGQ9H1L0 117 aa13.81□□□□□ -0.2
CUX1-209ENST00000487284 AKTIPQ9H8T0 292 aa13.81□□□□□ -0.2
CUX1-209ENST00000487284 AASDHPPTQ9NRN7 309 aa13.81□□□□□ -0.2
CUX1-209ENST00000487284 TRPS1Q9UHF7 1281 aa13.81□□□□□ -0.2
CUX1-209ENST00000487284 G3BP2Q9UN86 482 aaKnown RBP13.81□□□□□ -0.2
CUX1-209ENST00000487284 PRR33A8MZF0 331 aa13.8□□□□□ -0.2
CUX1-209ENST00000487284 KATNA1O75449 491 aa13.8□□□□□ -0.2
CUX1-209ENST00000487284 POP7O75817 140 aaKnown RBP13.8□□□□□ -0.2
CUX1-209ENST00000487284 CAPN1P07384 714 aa13.8□□□□□ -0.2
CUX1-209ENST00000487284 HOXC4P09017 264 aaPredicted RBP13.8□□□□□ -0.2
CUX1-209ENST00000487284 LINC00032P0C843 101 aa13.8□□□□□ -0.2
CUX1-209ENST00000487284 THRAP10827 490 aa13.8□□□□□ -0.2
CUX1-209ENST00000487284 EPORP19235 508 aa13.8□□□□□ -0.2
CUX1-209ENST00000487284 MAP4P27816 1152 aaKnown RBP13.8□□□□□ -0.2
CUX1-209ENST00000487284 CPOXP36551 454 aa13.8□□□□□ -0.2
CUX1-209ENST00000487284 KIAA1024LP59773 190 aa13.8□□□□□ -0.2
CUX1-209ENST00000487284 YPEL5P62699 121 aa13.8□□□□□ -0.2
CUX1-209ENST00000487284 IRX1P78414 480 aaPredicted RBP13.8□□□□□ -0.2
CUX1-209ENST00000487284 PTK2BQ14289 1009 aa13.8□□□□□ -0.2
CUX1-209ENST00000487284 PTCHD3Q3KNS1 767 aa13.8□□□□□ -0.2
CUX1-209ENST00000487284 PLK5Q496M5 336 aa13.8□□□□□ -0.2
CUX1-209ENST00000487284 DNAL1Q4LDG9 190 aa13.8□□□□□ -0.2
CUX1-209ENST00000487284 OGFOD2Q6N063 350 aa13.8□□□□□ -0.2
CUX1-209ENST00000487284 CYB5D1Q6P9G0 228 aa13.8□□□□□ -0.2
CUX1-209ENST00000487284 CRTC3Q6UUV7 619 aa13.8□□□□□ -0.2
CUX1-209ENST00000487284 LAYNQ6UX15 382 aa13.8□□□□□ -0.2
CUX1-209ENST00000487284 Q6ZSR6 202 aa13.8□□□□□ -0.2
CUX1-209ENST00000487284 MILR1Q7Z6M3 343 aa13.8□□□□□ -0.2
CUX1-209ENST00000487284 KLHDC8AQ8IYD2 350 aa13.8□□□□□ -0.2
CUX1-209ENST00000487284 CFAP206Q8IYR0 622 aa13.8□□□□□ -0.2
CUX1-209ENST00000487284 SLC22A18ASQ8N1D0 253 aa13.8□□□□□ -0.2
CUX1-209ENST00000487284 RP9Q8TA86 221 aaKnown RBP13.8□□□□□ -0.2
CUX1-209ENST00000487284 C1orf216Q8TAB5 229 aa13.8□□□□□ -0.2
CUX1-209ENST00000487284 DNASE2BQ8WZ79 361 aa13.8□□□□□ -0.2
CUX1-209ENST00000487284 FOPNLQ96NB1 174 aa13.8□□□□□ -0.2
CUX1-209ENST00000487284 FGF22Q9HCT0 170 aa13.8□□□□□ -0.2
CUX1-209ENST00000487284 MRPL40Q9NQ50 206 aaKnown RBP13.8□□□□□ -0.2
CUX1-209ENST00000487284 ZSCAN32Q9NX65 697 aa13.8□□□□□ -0.2
CUX1-209ENST00000487284 DNMT3AQ9Y6K1 912 aaPredicted RBP13.8□□□□□ -0.2
CUX1-209ENST00000487284 TP53BP1Q12888 1972 aaPredicted RBP13.8□□□□□ -0.2
CUX1-209ENST00000487284 FUCA1P04066 466 aa13.79□□□□□ -0.2
CUX1-209ENST00000487284 CEACAM5P06731 702 aa13.79□□□□□ -0.2
CUX1-209ENST00000487284 ALDOCP09972 364 aaKnown RBP13.79□□□□□ -0.2
CUX1-209ENST00000487284 EBLN1P0CF75 366 aa13.79□□□□□ -0.2
CUX1-209ENST00000487284 THEGLP0DJG4 465 aa13.79□□□□□ -0.2
CUX1-209ENST00000487284 HGFP14210 728 aa13.79□□□□□ -0.2
CUX1-209ENST00000487284 LBPP18428 481 aa13.79□□□□□ -0.2
CUX1-209ENST00000487284 RABIFP47224 123 aa13.79□□□□□ -0.2
CUX1-209ENST00000487284 DHPSP49366 369 aaPredicted RBP13.79□□□□□ -0.2
CUX1-209ENST00000487284 THOP1P52888 689 aa13.79□□□□□ -0.2
CUX1-209ENST00000487284 RACK1P63244 317 aaKnown RBP13.79□□□□□ -0.2
CUX1-209ENST00000487284 RPA4Q13156 261 aa13.79□□□□□ -0.2
CUX1-209ENST00000487284 C11orf74Q86VG3 221 aa13.79□□□□□ -0.2
CUX1-209ENST00000487284 LRRTM4Q86VH4 590 aa13.79□□□□□ -0.2
CUX1-209ENST00000487284 SNX32Q86XE0 403 aa13.79□□□□□ -0.2
CUX1-209ENST00000487284 DCBLD1Q8N8Z6 715 aa13.79□□□□□ -0.2
CUX1-209ENST00000487284 ZBTB44Q8NCP5 570 aa13.79□□□□□ -0.2
CUX1-209ENST00000487284 HMGCLL1Q8TB92 370 aa13.79□□□□□ -0.2
CUX1-209ENST00000487284 METTL6Q8TCB7 284 aa13.79□□□□□ -0.2
CUX1-209ENST00000487284 ATL1Q8WXF7 558 aa13.79□□□□□ -0.2
CUX1-209ENST00000487284 ATP6V1E2Q96A05 226 aa13.79□□□□□ -0.2
CUX1-209ENST00000487284 TUBGCP3Q96CW5 907 aa13.79□□□□□ -0.2
CUX1-209ENST00000487284 CCDC138Q96M89 665 aa13.79□□□□□ -0.2
CUX1-209ENST00000487284 WDR92Q96MX6 357 aa13.79□□□□□ -0.2
CUX1-209ENST00000487284 RTKNQ9BST9 563 aa13.79□□□□□ -0.2
CUX1-209ENST00000487284 SLC29A3Q9BZD2 475 aa13.79□□□□□ -0.2
CUX1-209ENST00000487284 MMADHCQ9H3L0 296 aaPredicted RBP13.79□□□□□ -0.2
CUX1-209ENST00000487284 DPEP2Q9H4A9 486 aa13.79□□□□□ -0.2
CUX1-209ENST00000487284 TM9SF3Q9HD45 589 aa13.79□□□□□ -0.2
CUX1-209ENST00000487284 SLC17A4Q9Y2C5 497 aa13.79□□□□□ -0.2
CUX1-209ENST00000487284 PRKAB1Q9Y478 270 aa13.79□□□□□ -0.2
CUX1-209ENST00000487284 MYO15AQ9UKN7 3530 aa13.79□□□□□ -0.2
CUX1-209ENST00000487284 A0A1W2PR77 199 aa13.79□□□□□ -0.2
CUX1-209ENST00000487284 KLHL33A6NCF5 533 aa13.79□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 11.2 ms