RNA–Protein interactions for RNA: ENST00000487017.5

COL7A1-210, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 5

Gene COL7A1, Length 5,807 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-210ENST00000487017 PRRG4Q9BZD6 226 aa16.11■□□□□ 0.17
COL7A1-210ENST00000487017 POLR2J2Q9GZM3 115 aaKnown RBP16.11■□□□□ 0.17
COL7A1-210ENST00000487017 USP29Q9HBJ7 922 aa16.11■□□□□ 0.17
COL7A1-210ENST00000487017 CLIC1O00299 241 aa16.1■□□□□ 0.17
COL7A1-210ENST00000487017 EPHX1P07099 455 aa16.1■□□□□ 0.17
COL7A1-210ENST00000487017 CSKP41240 450 aa16.1■□□□□ 0.17
COL7A1-210ENST00000487017 GANABQ14697 944 aaKnown RBP16.1■□□□□ 0.17
COL7A1-210ENST00000487017 MYBPC3Q14896 1274 aa16.1■□□□□ 0.17
COL7A1-210ENST00000487017 PSRC1Q6PGN9 363 aaPredicted RBP16.1■□□□□ 0.17
COL7A1-210ENST00000487017 ULK3Q6PHR2 472 aa16.1■□□□□ 0.17
COL7A1-210ENST00000487017 PRSS55Q6UWB4 352 aaPredicted RBP16.1■□□□□ 0.17
COL7A1-210ENST00000487017 PPP1R3FQ6ZSY5 799 aaPredicted RBP16.1■□□□□ 0.17
COL7A1-210ENST00000487017 ZMIZ2Q8NF64 920 aa16.1■□□□□ 0.17
COL7A1-210ENST00000487017 OR8H1Q8NGG4 311 aa16.1■□□□□ 0.17
COL7A1-210ENST00000487017 POLR2J3Q9H1A7 115 aaKnown RBP16.1■□□□□ 0.17
COL7A1-210ENST00000487017 PI15O43692 258 aa16.1■□□□□ 0.17
COL7A1-210ENST00000487017 TLL1O43897 1013 aa16.1■□□□□ 0.17
COL7A1-210ENST00000487017 FRRS1Q6ZNA5 592 aa16.1■□□□□ 0.17
COL7A1-210ENST00000487017 KAT2AQ92830 837 aa16.1■□□□□ 0.17
COL7A1-210ENST00000487017 PTPN18Q99952 460 aa16.1■□□□□ 0.17
COL7A1-210ENST00000487017 A0A1W2PRB8 838 aa16.1■□□□□ 0.17
COL7A1-210ENST00000487017 FAM189A1O60320 539 aa16.1■□□□□ 0.17
COL7A1-210ENST00000487017 RGS20O76081 388 aa16.1■□□□□ 0.17
COL7A1-210ENST00000487017 IFNA6P05013 189 aa16.1■□□□□ 0.17
COL7A1-210ENST00000487017 ZBTB48P10074 688 aaPredicted RBP16.1■□□□□ 0.17
COL7A1-210ENST00000487017 ENGP17813 658 aa16.1■□□□□ 0.17
COL7A1-210ENST00000487017 S100GP29377 79 aa16.1■□□□□ 0.17
COL7A1-210ENST00000487017 MVKQ03426 396 aa16.1■□□□□ 0.17
COL7A1-210ENST00000487017 SMCO1Q147U7 214 aa16.1■□□□□ 0.17
COL7A1-210ENST00000487017 SPATS1Q496A3 300 aa16.1■□□□□ 0.17
COL7A1-210ENST00000487017 SEC14L1Q92503 715 aa16.1■□□□□ 0.17
COL7A1-210ENST00000487017 CRELD1Q96HD1 420 aa16.1■□□□□ 0.17
COL7A1-210ENST00000487017 GALPQ9UBC7 116 aa16.1■□□□□ 0.17
COL7A1-210ENST00000487017 VPS29Q9UBQ0 182 aa16.1■□□□□ 0.17
COL7A1-210ENST00000487017 FZD4Q9ULV1 537 aa16.1■□□□□ 0.17
COL7A1-210ENST00000487017 TRBV23OR9-2A0A075B6M9 112 aa16.1■□□□□ 0.17
COL7A1-210ENST00000487017 TBX18O95935 607 aa16.1■□□□□ 0.17
COL7A1-210ENST00000487017 DGKQP52824 942 aa16.1■□□□□ 0.17
COL7A1-210ENST00000487017 INCA1Q0VD86 236 aa16.1■□□□□ 0.17
COL7A1-210ENST00000487017 OLIG2Q13516 323 aa16.1■□□□□ 0.17
COL7A1-210ENST00000487017 COLEC12Q5KU26 742 aa16.1■□□□□ 0.17
COL7A1-210ENST00000487017 LRRC70Q7Z2Q7 622 aa16.1■□□□□ 0.17
COL7A1-210ENST00000487017 TMEM126BQ8IUX1 230 aa16.1■□□□□ 0.17
COL7A1-210ENST00000487017 PEX5LQ8IYB4 626 aa16.1■□□□□ 0.17
COL7A1-210ENST00000487017 LMO3Q8TAP4 145 aa16.1■□□□□ 0.17
COL7A1-210ENST00000487017 B3GALT6Q96L58 329 aa16.1■□□□□ 0.17
COL7A1-210ENST00000487017 RBPJLQ9UBG7 517 aa16.1■□□□□ 0.17
COL7A1-210ENST00000487017 HS3ST4Q9Y661 456 aa16.1■□□□□ 0.17
COL7A1-210ENST00000487017 ABCC6O95255 1503 aa16.1■□□□□ 0.17
COL7A1-210ENST00000487017 A0A1W2PP18 115 aa16.09■□□□□ 0.17
COL7A1-210ENST00000487017 J3KR12 359 aa16.09■□□□□ 0.17
COL7A1-210ENST00000487017 HCN1O60741 890 aa16.09■□□□□ 0.17
COL7A1-210ENST00000487017 PAPSS2O95340 614 aaPredicted RBP16.09■□□□□ 0.17
COL7A1-210ENST00000487017 FGF3P11487 239 aaPredicted RBP16.09■□□□□ 0.17
COL7A1-210ENST00000487017 UFM1P61960 85 aa16.09■□□□□ 0.17
COL7A1-210ENST00000487017 RPS24P62847 133 aaKnown RBP16.09■□□□□ 0.17
COL7A1-210ENST00000487017 OR2T5Q6IEZ7 315 aa16.09■□□□□ 0.17
COL7A1-210ENST00000487017 ADNP2Q6IQ32 1131 aa16.09■□□□□ 0.17
COL7A1-210ENST00000487017 TNFAIP8L2Q6P589 184 aaPredicted RBP16.09■□□□□ 0.17
COL7A1-210ENST00000487017 OR2T29Q8NH02 315 aa16.09■□□□□ 0.17
COL7A1-210ENST00000487017 SLC32A1Q9H598 525 aa16.09■□□□□ 0.17
COL7A1-210ENST00000487017 MRM3Q9HC36 420 aaKnown RBP16.09■□□□□ 0.17
COL7A1-210ENST00000487017 DNAAF2Q9NVR5 837 aaKnown RBP16.09■□□□□ 0.17
COL7A1-210ENST00000487017 ZDHHC3Q9NYG2 299 aa16.09■□□□□ 0.17
COL7A1-210ENST00000487017 CFL2Q9Y281 166 aa16.09■□□□□ 0.17
COL7A1-210ENST00000487017 STYXL1Q9Y6J8 313 aa16.09■□□□□ 0.17
COL7A1-210ENST00000487017 ROBO1Q9Y6N7 1651 aa16.09■□□□□ 0.17
COL7A1-210ENST00000487017 PRORSD1PA6NEY8 169 aa16.09■□□□□ 0.17
COL7A1-210ENST00000487017 HAS3O00219 553 aa16.09■□□□□ 0.17
COL7A1-210ENST00000487017 FANCGO15287 622 aa16.09■□□□□ 0.17
COL7A1-210ENST00000487017 VIPP01282 170 aa16.09■□□□□ 0.17
COL7A1-210ENST00000487017 SLC35G6P0C7Q6 338 aa16.09■□□□□ 0.17
COL7A1-210ENST00000487017 RASSF6Q6ZTQ3 369 aa16.09■□□□□ 0.17
COL7A1-210ENST00000487017 OR9I1Q8NGQ6 314 aa16.09■□□□□ 0.17
COL7A1-210ENST00000487017 KCNC2Q96PR1 638 aa16.09■□□□□ 0.17
COL7A1-210ENST00000487017 FLRT1Q9NZU1 646 aa16.09■□□□□ 0.17
COL7A1-210ENST00000487017 PTBP2Q9UKA9 531 aaKnown RBP16.09■□□□□ 0.17
COL7A1-210ENST00000487017 XRN1Q8IZH2 1706 aaKnown RBP16.09■□□□□ 0.17
COL7A1-210ENST00000487017 PRAMEF33A0A0G2JMD5 474 aa16.09■□□□□ 0.17
COL7A1-210ENST00000487017 PITPNM1O00562 1244 aa16.09■□□□□ 0.17
COL7A1-210ENST00000487017 PRAMEF10O60809 474 aa16.09■□□□□ 0.17
COL7A1-210ENST00000487017 SEMA3DO95025 777 aa16.09■□□□□ 0.17
COL7A1-210ENST00000487017 GIMD1P0DJR0 217 aa16.09■□□□□ 0.17
COL7A1-210ENST00000487017 ARHGDIBP52566 201 aa16.09■□□□□ 0.17
COL7A1-210ENST00000487017 CRISP3P54108 245 aa16.09■□□□□ 0.17
COL7A1-210ENST00000487017 CAP1Q01518 475 aa16.09■□□□□ 0.17
COL7A1-210ENST00000487017 DNAJB7Q7Z6W7 309 aaPredicted RBP16.09■□□□□ 0.17
COL7A1-210ENST00000487017 FAM129CQ86XR2 697 aa16.09■□□□□ 0.17
COL7A1-210ENST00000487017 LGI4Q8N135 537 aa16.09■□□□□ 0.17
COL7A1-210ENST00000487017 ATP6V1C2Q8NEY4 427 aa16.09■□□□□ 0.17
COL7A1-210ENST00000487017 GRPEL2Q8TAA5 225 aa16.09■□□□□ 0.17
COL7A1-210ENST00000487017 CCDC106Q9BWC9 280 aa16.09■□□□□ 0.17
COL7A1-210ENST00000487017 MAGEE1Q9HCI5 957 aa16.09■□□□□ 0.17
COL7A1-210ENST00000487017 GDAP2Q9NXN4 497 aa16.09■□□□□ 0.17
COL7A1-210ENST00000487017 COL1A1P02452 1464 aaPredicted RBP16.09■□□□□ 0.17
COL7A1-210ENST00000487017 LOC100130705A0A1B0GUX0 176 aa16.09■□□□□ 0.17
COL7A1-210ENST00000487017 ZNF487B1APH4 448 aa16.09■□□□□ 0.17
COL7A1-210ENST00000487017 FKTNO75072 461 aa16.09■□□□□ 0.17
COL7A1-210ENST00000487017 RNASEH2AO75792 299 aaKnown RBP16.09■□□□□ 0.17
COL7A1-210ENST00000487017 RPL17P18621 184 aaKnown RBP16.09■□□□□ 0.17
Retrieved 100 of 20,778 RNA–protein pairs in 47 ms